RNA–Protein interactions for RNA: ENST00000462673.1

USP4-207, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 3

Gene USP4, Length 709 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-207ENST00000462673 KIR2DS2P43631 304 aa6.21□□□□□ -1.42
USP4-207ENST00000462673 REG1BP48304 166 aa6.21□□□□□ -1.42
USP4-207ENST00000462673 SELENOTP62341 195 aa6.21□□□□□ -1.42
USP4-207ENST00000462673 ARL16Q0P5N6 197 aa6.21□□□□□ -1.42
USP4-207ENST00000462673 EBI3Q14213 229 aa6.21□□□□□ -1.42
USP4-207ENST00000462673 SPANXN5Q5MJ07 72 aa6.21□□□□□ -1.42
USP4-207ENST00000462673 COL5A1-AS1Q5SY13 56 aa6.21□□□□□ -1.42
USP4-207ENST00000462673 PDPNQ86YL7 162 aa6.21□□□□□ -1.42
USP4-207ENST00000462673 TCTEX1D1Q8N7M0 179 aa6.21□□□□□ -1.42
USP4-207ENST00000462673 OR10G9Q8NGN4 311 aa6.21□□□□□ -1.42
USP4-207ENST00000462673 OR10G7Q8NGN6 311 aa6.21□□□□□ -1.42
USP4-207ENST00000462673 SPATA3Q8NHX4 192 aa6.21□□□□□ -1.42
USP4-207ENST00000462673 PIFOQ8TCI5 191 aa6.21□□□□□ -1.42
USP4-207ENST00000462673 SLC25A33Q9BSK2 321 aa6.21□□□□□ -1.42
USP4-207ENST00000462673 C19orf24Q9BVV8 132 aa6.21□□□□□ -1.42
USP4-207ENST00000462673 OR2D2Q9H210 308 aa6.21□□□□□ -1.42
USP4-207ENST00000462673 IFI27L2Q9H2X8 130 aa6.21□□□□□ -1.42
USP4-207ENST00000462673 C16orf95Q9H693 158 aa6.21□□□□□ -1.42
USP4-207ENST00000462673 ESM1Q9NQ30 184 aa6.21□□□□□ -1.42
USP4-207ENST00000462673 MOB4Q9Y3A3 225 aa6.21□□□□□ -1.42
USP4-207ENST00000462673 SOX21Q9Y651 276 aaPredicted RBP6.21□□□□□ -1.42
USP4-207ENST00000462673 TLN2Q9Y4G6 2542 aa6.21□□□□□ -1.42
USP4-207ENST00000462673 NSD1Q96L73 2696 aaPredicted RBP6.2□□□□□ -1.42
USP4-207ENST00000462673 A0A1W2PPI3 338 aa6.2□□□□□ -1.42
USP4-207ENST00000462673 CLPSL1A2RUU4 121 aa6.2□□□□□ -1.42
USP4-207ENST00000462673 M0R1X1 148 aa6.2□□□□□ -1.42
USP4-207ENST00000462673 HPRT1P00492 218 aa6.2□□□□□ -1.42
USP4-207ENST00000462673 IGKV1-39P01597 117 aa6.2□□□□□ -1.42
USP4-207ENST00000462673 IGKV1D-39P04432 117 aa6.2□□□□□ -1.42
USP4-207ENST00000462673 IL6RP08887 468 aaPredicted RBP6.2□□□□□ -1.42
USP4-207ENST00000462673 CT45A6P0DMU7 189 aa6.2□□□□□ -1.42
USP4-207ENST00000462673 CT45A5P0DMU8 189 aa6.2□□□□□ -1.42
USP4-207ENST00000462673 CT45A7P0DMV0 189 aa6.2□□□□□ -1.42
USP4-207ENST00000462673 ADMP35318 185 aa6.2□□□□□ -1.42
USP4-207ENST00000462673 COMPP49747 757 aaPredicted RBP6.2□□□□□ -1.42
USP4-207ENST00000462673 RPS16P62249 146 aaKnown RBP6.2□□□□□ -1.42
USP4-207ENST00000462673 PLGLAQ15195 96 aa6.2□□□□□ -1.42
USP4-207ENST00000462673 COX19Q49B96 90 aa6.2□□□□□ -1.42
USP4-207ENST00000462673 OR8G2PQ6IF36 304 aa6.2□□□□□ -1.42
USP4-207ENST00000462673 LINC01551Q86U37 167 aa6.2□□□□□ -1.42
USP4-207ENST00000462673 DYNAPQ8N1N2 210 aa6.2□□□□□ -1.42
USP4-207ENST00000462673 ARL6IP6Q8N6S5 226 aa6.2□□□□□ -1.42
USP4-207ENST00000462673 C3orf56Q8N813 242 aa6.2□□□□□ -1.42
USP4-207ENST00000462673 OR5AN1Q8NGI8 311 aa6.2□□□□□ -1.42
USP4-207ENST00000462673 VSTM2AQ8TAG5 236 aa6.2□□□□□ -1.42
USP4-207ENST00000462673 EAF1Q96JC9 268 aaPredicted RBP6.2□□□□□ -1.42
USP4-207ENST00000462673 GPHA2Q96T91 129 aa6.2□□□□□ -1.42
USP4-207ENST00000462673 NABP2Q9BQ15 211 aa6.2□□□□□ -1.42
USP4-207ENST00000462673 NPCDR1Q9BY65 106 aa6.2□□□□□ -1.42
USP4-207ENST00000462673 ZNF586Q9NXT0 402 aa6.2□□□□□ -1.42
USP4-207ENST00000462673 HSPB7Q9UBY9 170 aa6.2□□□□□ -1.42
USP4-207ENST00000462673 SVEP1Q4LDE5 3571 aa6.2□□□□□ -1.42
USP4-207ENST00000462673 PAGE4O60829 102 aa6.19□□□□□ -1.42
USP4-207ENST00000462673 MPDU1O75352 247 aa6.19□□□□□ -1.42
USP4-207ENST00000462673 MT-ND6P03923 174 aa6.19□□□□□ -1.42
USP4-207ENST00000462673 CHRNA7P36544 502 aa6.19□□□□□ -1.42
USP4-207ENST00000462673 YPEL3P61236 119 aaPredicted RBP6.19□□□□□ -1.42
USP4-207ENST00000462673 SLC35B1P78383 322 aa6.19□□□□□ -1.42
USP4-207ENST00000462673 MMDQ15546 238 aa6.19□□□□□ -1.42
USP4-207ENST00000462673 VWC2Q2TAL6 325 aa6.19□□□□□ -1.42
USP4-207ENST00000462673 VMA21Q3ZAQ7 101 aa6.19□□□□□ -1.42
USP4-207ENST00000462673 RPL39P5Q59GN2 51 aa6.19□□□□□ -1.42
USP4-207ENST00000462673 LDLRAD2Q5SZI1 272 aa6.19□□□□□ -1.42
USP4-207ENST00000462673 RPP25LQ8N5L8 163 aaKnown RBP6.19□□□□□ -1.42
USP4-207ENST00000462673 OR10P1Q8NGE3 313 aa6.19□□□□□ -1.42
USP4-207ENST00000462673 OSR1Q8TAX0 266 aaPredicted RBP6.19□□□□□ -1.42
USP4-207ENST00000462673 CFHR4Q92496 578 aa6.19□□□□□ -1.42
USP4-207ENST00000462673 SFRP2Q96HF1 295 aa6.19□□□□□ -1.42
USP4-207ENST00000462673 SLC35D1Q9NTN3 355 aa6.19□□□□□ -1.42
USP4-207ENST00000462673 RNF114Q9Y508 228 aa6.19□□□□□ -1.42
USP4-207ENST00000462673 FN1P02751 2386 aaKnown RBP6.19□□□□□ -1.42
USP4-207ENST00000462673 SONP18583 2426 aaKnown RBP6.18□□□□□ -1.42
USP4-207ENST00000462673 IGHV3-72A0A0B4J1Y9 119 aa6.18□□□□□ -1.42
USP4-207ENST00000462673 H0YJW9 148 aa6.18□□□□□ -1.42
USP4-207ENST00000462673 NBR2O15453 112 aa6.18□□□□□ -1.42
USP4-207ENST00000462673 ACTL6BO94805 426 aa6.18□□□□□ -1.42
USP4-207ENST00000462673 NPSP0C0P6 89 aa6.18□□□□□ -1.42
USP4-207ENST00000462673 CRISP2P16562 243 aa6.18□□□□□ -1.42
USP4-207ENST00000462673 CD24P25063 80 aa6.18□□□□□ -1.42
USP4-207ENST00000462673 DUTP33316 252 aaKnown RBP6.18□□□□□ -1.42
USP4-207ENST00000462673 DIAPH2-AS1Q14236 149 aa6.18□□□□□ -1.42
USP4-207ENST00000462673 C21orf62-AS1Q17RA5 79 aa6.18□□□□□ -1.42
USP4-207ENST00000462673 KRTAP24-1Q3LI83 254 aa6.18□□□□□ -1.42
USP4-207ENST00000462673 CST9LP1Q5W188 147 aa6.18□□□□□ -1.42
USP4-207ENST00000462673 WDR73Q6P4I2 378 aa6.18□□□□□ -1.42
USP4-207ENST00000462673 SHISA2Q6UWI4 295 aa6.18□□□□□ -1.42
USP4-207ENST00000462673 TMEM219Q86XT9 240 aa6.18□□□□□ -1.42
USP4-207ENST00000462673 KIRREL3-AS3Q8N7Y1 241 aaPredicted RBP6.18□□□□□ -1.42
USP4-207ENST00000462673 NPBQ8NG41 125 aa6.18□□□□□ -1.42
USP4-207ENST00000462673 OR5AU1Q8NGC0 362 aa6.18□□□□□ -1.42
USP4-207ENST00000462673 OR4S2Q8NH73 311 aa6.18□□□□□ -1.42
USP4-207ENST00000462673 MRPL20Q9BYC9 149 aaKnown RBP6.18□□□□□ -1.42
USP4-207ENST00000462673 SAMD10Q9BYL1 202 aa6.18□□□□□ -1.42
USP4-207ENST00000462673 LY96Q9Y6Y9 160 aa6.18□□□□□ -1.42
USP4-207ENST00000462673 TEP1Q99973 2627 aaKnown RBP6.18□□□□□ -1.42
USP4-207ENST00000462673 MXRA5Q9NR99 2828 aa6.17□□□□□ -1.42
USP4-207ENST00000462673 MTORP42345 2549 aa6.17□□□□□ -1.42
USP4-207ENST00000462673 RBFOX2O43251 390 aaKnown RBP eCLIP6.17□□□□□ -1.42
USP4-207ENST00000462673 MT-CO2P00403 227 aa6.17□□□□□ -1.42
USP4-207ENST00000462673 VDAC2P45880 294 aaPredicted RBP6.17□□□□□ -1.42
Retrieved 100 of 20,778 RNA–protein pairs in 75.4 ms