RNA–Protein interactions for RNA: ENST00000359902.2

CCDC88B-203, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 1 (best) BASIC

Gene CCDC88B, Length 2,326 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-203ENST00000359902 BAGE2Q86Y30 109 aa16.57■□□□□ 0.24
CCDC88B-203ENST00000359902 BLNKQ8WV28 456 aa16.57■□□□□ 0.24
CCDC88B-203ENST00000359902 SERTAD4Q9NUC0 356 aa16.57■□□□□ 0.24
CCDC88B-203ENST00000359902 ARHGAP32A7KAX9 2087 aa16.57■□□□□ 0.24
CCDC88B-203ENST00000359902 GNG5P63218 68 aa16.56■□□□□ 0.24
CCDC88B-203ENST00000359902 NEU4Q8WWR8 484 aaPredicted RBP16.56■□□□□ 0.24
CCDC88B-203ENST00000359902 WNT10AQ9GZT5 417 aa16.56■□□□□ 0.24
CCDC88B-203ENST00000359902 PRO1933Q9H354 126 aa16.56■□□□□ 0.24
CCDC88B-203ENST00000359902 EPDR1Q9UM22 224 aa16.56■□□□□ 0.24
CCDC88B-203ENST00000359902 HILPDAQ9Y5L2 63 aa16.56■□□□□ 0.24
CCDC88B-203ENST00000359902 NBEAP1P0C6P0 100 aa16.56■□□□□ 0.24
CCDC88B-203ENST00000359902 CRISP2P16562 243 aa16.56■□□□□ 0.24
CCDC88B-203ENST00000359902 SLC35B1P78383 322 aa16.56■□□□□ 0.24
CCDC88B-203ENST00000359902 CFHR4Q92496 578 aa16.56■□□□□ 0.24
CCDC88B-203ENST00000359902 FAM168AQ92567 244 aa16.56■□□□□ 0.24
CCDC88B-203ENST00000359902 LOC105371242A0A075B767 164 aa16.55■□□□□ 0.24
CCDC88B-203ENST00000359902 ZNF705GA8MUZ8 300 aaPredicted RBP16.55■□□□□ 0.24
CCDC88B-203ENST00000359902 IGLC1P0CG04 106 aa16.55■□□□□ 0.24
CCDC88B-203ENST00000359902 MMDQ15546 238 aa16.55■□□□□ 0.24
CCDC88B-203ENST00000359902 ZNF124Q15973 351 aa16.55■□□□□ 0.24
CCDC88B-203ENST00000359902 ASPHD1Q5U4P2 390 aa16.55■□□□□ 0.24
CCDC88B-203ENST00000359902 SRSF8Q9BRL6 282 aaKnown RBP16.55■□□□□ 0.24
CCDC88B-203ENST00000359902 SSBP3Q9BWW4 388 aaPredicted RBP16.55■□□□□ 0.24
CCDC88B-203ENST00000359902 PGPA6NDG6 321 aa16.54■□□□□ 0.24
CCDC88B-203ENST00000359902 CNIH1O95406 144 aa16.54■□□□□ 0.24
CCDC88B-203ENST00000359902 GP9P14770 177 aa16.54■□□□□ 0.24
CCDC88B-203ENST00000359902 LINC00310P59036 64 aa16.54■□□□□ 0.24
CCDC88B-203ENST00000359902 RPL19P84098 196 aaKnown RBP16.54■□□□□ 0.24
CCDC88B-203ENST00000359902 KLRD1Q13241 179 aa16.54■□□□□ 0.24
CCDC88B-203ENST00000359902 M0R1W7 72 aa16.54■□□□□ 0.24
CCDC88B-203ENST00000359902 CA1P00915 261 aaPredicted RBP16.54■□□□□ 0.24
CCDC88B-203ENST00000359902 PSG1P11464 419 aa16.54■□□□□ 0.24
CCDC88B-203ENST00000359902 TMEM183BQ1AE95 376 aa16.54■□□□□ 0.24
CCDC88B-203ENST00000359902 LEMD1Q68G75 181 aa16.54■□□□□ 0.24
CCDC88B-203ENST00000359902 TMEM136Q6ZRR5 245 aa16.54■□□□□ 0.24
CCDC88B-203ENST00000359902 FAM231DQ6ZW35 169 aa16.54■□□□□ 0.24
CCDC88B-203ENST00000359902 IGFBPL1Q8WX77 278 aa16.54■□□□□ 0.24
CCDC88B-203ENST00000359902 HRNRQ86YZ3 2850 aaPredicted RBP16.54■□□□□ 0.24
CCDC88B-203ENST00000359902 SLC25A5P05141 298 aaKnown RBP16.53■□□□□ 0.24
CCDC88B-203ENST00000359902 WDR73Q6P4I2 378 aa16.53■□□□□ 0.24
CCDC88B-203ENST00000359902 ABCA1O95477 2261 aa16.53■□□□□ 0.24
CCDC88B-203ENST00000359902 NBR2O15453 112 aa16.53■□□□□ 0.24
CCDC88B-203ENST00000359902 PRTN3P24158 256 aa16.53■□□□□ 0.24
CCDC88B-203ENST00000359902 CMTM2Q8TAZ6 248 aa16.53■□□□□ 0.24
CCDC88B-203ENST00000359902 MBD6Q96DN6 1003 aa16.53■□□□□ 0.24
CCDC88B-203ENST00000359902 NAT8BQ9UHF3 227 aa16.53■□□□□ 0.24
CCDC88B-203ENST00000359902 KLF12Q9Y4X4 402 aa16.53■□□□□ 0.24
CCDC88B-203ENST00000359902 ODF3BA8MYP8 253 aa16.52■□□□□ 0.24
CCDC88B-203ENST00000359902 MT-ND6P03923 174 aa16.52■□□□□ 0.24
CCDC88B-203ENST00000359902 CD24P25063 80 aa16.52■□□□□ 0.24
CCDC88B-203ENST00000359902 CEACAM3P40198 252 aa16.52■□□□□ 0.24
CCDC88B-203ENST00000359902 NPBQ8NG41 125 aa16.52■□□□□ 0.24
CCDC88B-203ENST00000359902 HIGD1AQ9Y241 93 aa16.52■□□□□ 0.24
CCDC88B-203ENST00000359902 ESDP10768 282 aa16.52■□□□□ 0.23
CCDC88B-203ENST00000359902 Q0VG73 95 aa16.52■□□□□ 0.23
CCDC88B-203ENST00000359902 COX19Q49B96 90 aa16.52■□□□□ 0.23
CCDC88B-203ENST00000359902 ZNF664Q8N3J9 261 aa16.52■□□□□ 0.23
CCDC88B-203ENST00000359902 NUDT10Q8NFP7 164 aa16.52■□□□□ 0.23
CCDC88B-203ENST00000359902 NUDT11Q96G61 164 aa16.52■□□□□ 0.23
CCDC88B-203ENST00000359902 IZUMO1RA6ND01 250 aa16.51■□□□□ 0.23
CCDC88B-203ENST00000359902 PAX1P15863 534 aa16.51■□□□□ 0.23
CCDC88B-203ENST00000359902 LYZP61626 148 aa16.51■□□□□ 0.23
CCDC88B-203ENST00000359902 C2orf88Q9BSF0 95 aa16.51■□□□□ 0.23
CCDC88B-203ENST00000359902 C7orf69Q9H7B7 122 aa16.51■□□□□ 0.23
CCDC88B-203ENST00000359902 K7EIM0 57 aa16.51■□□□□ 0.23
CCDC88B-203ENST00000359902 SERF1AO75920 110 aa16.51■□□□□ 0.23
CCDC88B-203ENST00000359902 NDUFA3O95167 84 aa16.51■□□□□ 0.23
CCDC88B-203ENST00000359902 IGKV1-17P01599 117 aa16.51■□□□□ 0.23
CCDC88B-203ENST00000359902 UBE2G1P62253 170 aa16.51■□□□□ 0.23
CCDC88B-203ENST00000359902 FBLN7Q53RD9 439 aa16.51■□□□□ 0.23
CCDC88B-203ENST00000359902 MRPL54Q6P161 138 aaKnown RBP16.51■□□□□ 0.23
CCDC88B-203ENST00000359902 UNQ6494/PRO21346Q6UXR6 183 aa16.51■□□□□ 0.23
CCDC88B-203ENST00000359902 DTX2Q86UW9 622 aa16.51■□□□□ 0.23
CCDC88B-203ENST00000359902 MS4A10Q96PG2 267 aa16.51■□□□□ 0.23
CCDC88B-203ENST00000359902 F2Z2F3 143 aa16.5■□□□□ 0.23
CCDC88B-203ENST00000359902 H3BTX0 84 aa16.5■□□□□ 0.23
CCDC88B-203ENST00000359902 AMY1AP04745 511 aa16.5■□□□□ 0.23
CCDC88B-203ENST00000359902 RAB4BP61018 213 aa16.5■□□□□ 0.23
CCDC88B-203ENST00000359902 SGK494Q96LW2 274 aa16.5■□□□□ 0.23
CCDC88B-203ENST00000359902 RASL11BQ9BPW5 248 aa16.5■□□□□ 0.23
CCDC88B-203ENST00000359902 A0A1W2PRD5 423 aa16.5■□□□□ 0.23
CCDC88B-203ENST00000359902 A0A1W2PRF3 423 aa16.5■□□□□ 0.23
CCDC88B-203ENST00000359902 A0A1W2PRM7 423 aa16.5■□□□□ 0.23
CCDC88B-203ENST00000359902 IQCJQ1A5X6 159 aa16.5■□□□□ 0.23
CCDC88B-203ENST00000359902 GRAMD2BQ96HH9 432 aa16.5■□□□□ 0.23
CCDC88B-203ENST00000359902 SLC25A39Q9BZJ4 359 aaPredicted RBP16.5■□□□□ 0.23
CCDC88B-203ENST00000359902 A0A1W2PPR1 153 aa16.49■□□□□ 0.23
CCDC88B-203ENST00000359902 BAGE3Q86Y29 109 aa16.49■□□□□ 0.23
CCDC88B-203ENST00000359902 C5orf17Q8NAS9 161 aa16.49■□□□□ 0.23
CCDC88B-203ENST00000359902 ATG101Q9BSB4 218 aa16.49■□□□□ 0.23
CCDC88B-203ENST00000359902 FAM103A1Q9BTL3 118 aaKnown RBP16.49■□□□□ 0.23
CCDC88B-203ENST00000359902 Q9H3A6 140 aa16.49■□□□□ 0.23
CCDC88B-203ENST00000359902 PAFAH1B2P68402 229 aa16.48■□□□□ 0.23
CCDC88B-203ENST00000359902 PRR27Q6MZM9 219 aa16.48■□□□□ 0.23
CCDC88B-203ENST00000359902 GNB4Q9HAV0 340 aa16.48■□□□□ 0.23
CCDC88B-203ENST00000359902 MRPL27Q9P0M9 148 aaKnown RBP16.48■□□□□ 0.23
CCDC88B-203ENST00000359902 RPH3ALQ9UNE2 315 aa16.48■□□□□ 0.23
CCDC88B-203ENST00000359902 KIAA1644Q3SXP7 199 aa16.48■□□□□ 0.23
CCDC88B-203ENST00000359902 GPR82Q96P67 336 aa16.48■□□□□ 0.23
CCDC88B-203ENST00000359902 MLST8Q9BVC4 326 aa16.48■□□□□ 0.23
Retrieved 100 of 20,778 RNA–protein pairs in 66.1 ms