RNA–Protein interactions for RNA: ENST00000339872.8

HMGB1-202, Transcript of high mobility group box 1, humanhuman

APPRIS P1 TSL 2 BASIC

Gene HMGB1, Length 2,319 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-202ENST00000339872 DEFB112Q30KQ8 113 aa10.5□□□□□ -0.73
HMGB1-202ENST00000339872 Q56UQ5 140 aa10.5□□□□□ -0.73
HMGB1-202ENST00000339872 OR51G1Q8NGK1 321 aa10.5□□□□□ -0.73
HMGB1-202ENST00000339872 SMIM7Q9BQ49 75 aa10.5□□□□□ -0.73
HMGB1-202ENST00000339872 PARLQ9H300 379 aa10.5□□□□□ -0.73
HMGB1-202ENST00000339872 C21orf62Q9NYP8 219 aa10.5□□□□□ -0.73
HMGB1-202ENST00000339872 FBXL7Q9UJT9 491 aa10.5□□□□□ -0.73
HMGB1-202ENST00000339872 PITPNC1Q9UKF7 332 aa10.5□□□□□ -0.73
HMGB1-202ENST00000339872 NDUFS6O75380 124 aaKnown RBP10.5□□□□□ -0.73
HMGB1-202ENST00000339872 HYPMO75409 117 aa10.5□□□□□ -0.73
HMGB1-202ENST00000339872 FABP1P07148 127 aa10.5□□□□□ -0.73
HMGB1-202ENST00000339872 RD3LP0DJH9 198 aa10.5□□□□□ -0.73
HMGB1-202ENST00000339872 HIST1H1BP16401 226 aaKnown RBP10.5□□□□□ -0.73
HMGB1-202ENST00000339872 UBE2L3P68036 154 aaKnown RBP10.5□□□□□ -0.73
HMGB1-202ENST00000339872 WFDC11Q8NEX6 87 aa10.5□□□□□ -0.73
HMGB1-202ENST00000339872 TMEM68Q96MH6 324 aa10.5□□□□□ -0.73
HMGB1-202ENST00000339872 TXNDC17Q9BRA2 123 aa10.5□□□□□ -0.73
HMGB1-202ENST00000339872 HELZ2Q9BYK8 2649 aaKnown RBP10.49□□□□□ -0.73
HMGB1-202ENST00000339872 TSPAN4O14817 238 aa10.49□□□□□ -0.73
HMGB1-202ENST00000339872 PLP1P60201 277 aa10.49□□□□□ -0.73
HMGB1-202ENST00000339872 C16orf82Q7Z2V1 217 aa10.49□□□□□ -0.73
HMGB1-202ENST00000339872 F6UZH7 168 aa10.49□□□□□ -0.73
HMGB1-202ENST00000339872 F8W735 103 aaPredicted RBP10.49□□□□□ -0.73
HMGB1-202ENST00000339872 PYYP10082 97 aa10.49□□□□□ -0.73
HMGB1-202ENST00000339872 CYB5R2Q6BCY4 276 aa10.49□□□□□ -0.73
HMGB1-202ENST00000339872 ZNF48Q96MX3 618 aaPredicted RBP10.49□□□□□ -0.73
HMGB1-202ENST00000339872 LINC00527Q9UJ94 153 aa10.49□□□□□ -0.73
HMGB1-202ENST00000339872 HIGD1AQ9Y241 93 aa10.49□□□□□ -0.73
HMGB1-202ENST00000339872 PRRC2AP48634 2157 aaKnown RBP10.48□□□□□ -0.73
HMGB1-202ENST00000339872 TRAV30A0A087WSZ9 112 aa10.48□□□□□ -0.73
HMGB1-202ENST00000339872 TRAV41A0A0B4J266 112 aa10.48□□□□□ -0.73
HMGB1-202ENST00000339872 M0QZK8 103 aa10.48□□□□□ -0.73
HMGB1-202ENST00000339872 TOMM40O96008 361 aa10.48□□□□□ -0.73
HMGB1-202ENST00000339872 NPPCP23582 126 aa10.48□□□□□ -0.73
HMGB1-202ENST00000339872 RHOGP84095 191 aa10.48□□□□□ -0.73
HMGB1-202ENST00000339872 PAXXQ9BUH6 204 aa10.48□□□□□ -0.73
HMGB1-202ENST00000339872 CSPG4Q6UVK1 2322 aa10.47□□□□□ -0.73
HMGB1-202ENST00000339872 SCO2A0A1W2PP80 73 aa10.47□□□□□ -0.73
HMGB1-202ENST00000339872 FSHBP01225 129 aa10.47□□□□□ -0.73
HMGB1-202ENST00000339872 IGHV4-59P01825 116 aa10.47□□□□□ -0.73
HMGB1-202ENST00000339872 C15orf32Q32M92 178 aa10.47□□□□□ -0.73
HMGB1-202ENST00000339872 OR51M1Q9H341 326 aa10.47□□□□□ -0.73
HMGB1-202ENST00000339872 SDF2L1Q9HCN8 221 aa10.47□□□□□ -0.73
HMGB1-202ENST00000339872 NAT8Q9UHE5 227 aa10.47□□□□□ -0.73
HMGB1-202ENST00000339872 ARL2-SNX15V9GYD0 113 aa10.47□□□□□ -0.73
HMGB1-202ENST00000339872 OR2T8A6NH00 312 aa10.47□□□□□ -0.73
HMGB1-202ENST00000339872 NDUFB4O95168 129 aa10.47□□□□□ -0.73
HMGB1-202ENST00000339872 PNRC1Q12796 327 aaPredicted RBP10.47□□□□□ -0.73
HMGB1-202ENST00000339872 MS4A10Q96PG2 267 aa10.47□□□□□ -0.73
HMGB1-202ENST00000339872 SMCO4Q9NRQ5 59 aa10.47□□□□□ -0.73
HMGB1-202ENST00000339872 ZANQ9Y493 2812 aa10.47□□□□□ -0.73
HMGB1-202ENST00000339872 TRBV9A0A0B4J1U6 114 aa10.46□□□□□ -0.73
HMGB1-202ENST00000339872 IL4P05112 153 aa10.46□□□□□ -0.73
HMGB1-202ENST00000339872 BLCAPP62952 87 aa10.46□□□□□ -0.73
HMGB1-202ENST00000339872 TMEM241Q24JQ0 296 aa10.46□□□□□ -0.73
HMGB1-202ENST00000339872 LEMD1Q68G75 181 aa10.46□□□□□ -0.73
HMGB1-202ENST00000339872 CIARTQ8N365 385 aaPredicted RBP10.46□□□□□ -0.73
HMGB1-202ENST00000339872 VN1R17PQ8TDU5 208 aa10.46□□□□□ -0.73
HMGB1-202ENST00000339872 DERL1Q9BUN8 251 aa10.46□□□□□ -0.73
HMGB1-202ENST00000339872 SMAD7O15105 426 aaKnown RBP10.46□□□□□ -0.74
HMGB1-202ENST00000339872 IGHG2P01859 326 aa10.46□□□□□ -0.74
HMGB1-202ENST00000339872 CRIP2P52943 208 aaPredicted RBP10.46□□□□□ -0.74
HMGB1-202ENST00000339872 YPEL3P61236 119 aaPredicted RBP10.46□□□□□ -0.74
HMGB1-202ENST00000339872 KLK9Q2XQG4 91 aa10.46□□□□□ -0.74
HMGB1-202ENST00000339872 C19orf54Q5BKX5 351 aa10.46□□□□□ -0.74
HMGB1-202ENST00000339872 RNF125Q96EQ8 232 aa10.46□□□□□ -0.74
HMGB1-202ENST00000339872 SLC25A39Q9BZJ4 359 aaPredicted RBP10.46□□□□□ -0.74
HMGB1-202ENST00000339872 KLK9Q9UKQ9 250 aa10.46□□□□□ -0.74
HMGB1-202ENST00000339872 SCGB2A1O75556 95 aa10.45□□□□□ -0.74
HMGB1-202ENST00000339872 SNRPCP09234 159 aaKnown RBP10.45□□□□□ -0.74
HMGB1-202ENST00000339872 ADIRFQ15847 76 aa10.45□□□□□ -0.74
HMGB1-202ENST00000339872 ZNF491Q8N8L2 437 aa10.45□□□□□ -0.74
HMGB1-202ENST00000339872 NECAP1Q8NC96 275 aa10.45□□□□□ -0.74
HMGB1-202ENST00000339872 STXBP6Q8NFX7 210 aa10.45□□□□□ -0.74
HMGB1-202ENST00000339872 FXYD5Q96DB9 178 aa10.45□□□□□ -0.74
HMGB1-202ENST00000339872 TXN2Q99757 166 aa10.45□□□□□ -0.74
HMGB1-202ENST00000339872 A0A1W2PRE2 83 aa10.45□□□□□ -0.74
HMGB1-202ENST00000339872 GGTLC3B5MD39 225 aa10.45□□□□□ -0.74
HMGB1-202ENST00000339872 IGF1P05019 195 aa10.45□□□□□ -0.74
HMGB1-202ENST00000339872 GPR183P32249 361 aa10.45□□□□□ -0.74
HMGB1-202ENST00000339872 IER3P46695 156 aa10.45□□□□□ -0.74
HMGB1-202ENST00000339872 ZNF502Q8TBZ5 544 aa10.45□□□□□ -0.74
HMGB1-202ENST00000339872 Q8WTZ3 238 aa10.45□□□□□ -0.74
HMGB1-202ENST00000339872 ISOC2Q96AB3 205 aa10.45□□□□□ -0.74
HMGB1-202ENST00000339872 MRPL27Q9P0M9 148 aaKnown RBP10.45□□□□□ -0.74
HMGB1-202ENST00000339872 CREBBPQ92793 2442 aa10.45□□□□□ -0.74
HMGB1-202ENST00000339872 CTSGP08311 255 aa10.44□□□□□ -0.74
HMGB1-202ENST00000339872 FCGR2BP31994 310 aaPredicted RBP10.44□□□□□ -0.74
HMGB1-202ENST00000339872 Q6ZS46 218 aa10.44□□□□□ -0.74
HMGB1-202ENST00000339872 C9orf139Q6ZV77 190 aa10.44□□□□□ -0.74
HMGB1-202ENST00000339872 NOL4LQ96MY1 436 aaPredicted RBP10.44□□□□□ -0.74
HMGB1-202ENST00000339872 CHRDL1Q9BU40 450 aa10.44□□□□□ -0.74
HMGB1-202ENST00000339872 WI2-2373I1.2A0A1W2PRP0 233 aa10.44□□□□□ -0.74
HMGB1-202ENST00000339872 B4DEV8 164 aa10.44□□□□□ -0.74
HMGB1-202ENST00000339872 GP9P14770 177 aa10.44□□□□□ -0.74
HMGB1-202ENST00000339872 RPL23P62829 140 aaKnown RBP10.44□□□□□ -0.74
HMGB1-202ENST00000339872 SUMO1P63165 101 aaKnown RBP10.44□□□□□ -0.74
HMGB1-202ENST00000339872 BLNKQ8WV28 456 aa10.44□□□□□ -0.74
HMGB1-202ENST00000339872 C11orf52Q96A22 123 aa10.44□□□□□ -0.74
HMGB1-202ENST00000339872 A0A087WWC5 75 aa10.43□□□□□ -0.74
Retrieved 100 of 20,778 RNA–protein pairs in 67.1 ms