RNA–Protein interactions for RNA: ENST00000316694.7

SHMT1-201, Transcript of serine hydroxymethyltransferase 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SHMT1, Length 2,464 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-201ENST00000316694 Q9UFV3 132 aa17.66■□□□□ 0.42
SHMT1-201ENST00000316694 PGPA6NDG6 321 aa17.66■□□□□ 0.42
SHMT1-201ENST00000316694 HIST1H1EP10412 219 aaKnown RBP17.66■□□□□ 0.42
SHMT1-201ENST00000316694 TNXAQ16473 311 aa17.66■□□□□ 0.42
SHMT1-201ENST00000316694 MRPL27Q9P0M9 148 aaKnown RBP17.66■□□□□ 0.42
SHMT1-201ENST00000316694 EPDR1Q9UM22 224 aa17.66■□□□□ 0.42
SHMT1-201ENST00000316694 HSBP1O75506 76 aa17.65■□□□□ 0.42
SHMT1-201ENST00000316694 PERPQ96FX8 193 aa17.65■□□□□ 0.42
SHMT1-201ENST00000316694 MYCNOSP40205 109 aa17.65■□□□□ 0.42
SHMT1-201ENST00000316694 LCN12Q6JVE5 192 aa17.65■□□□□ 0.42
SHMT1-201ENST00000316694 FAM71F2Q6NXP2 309 aa17.65■□□□□ 0.42
SHMT1-201ENST00000316694 H3BTX0 84 aa17.64■□□□□ 0.42
SHMT1-201ENST00000316694 TFPI2P48307 235 aa17.64■□□□□ 0.42
SHMT1-201ENST00000316694 MMDQ15546 238 aa17.64■□□□□ 0.42
SHMT1-201ENST00000316694 LINC00311Q8N616 119 aa17.64■□□□□ 0.42
SHMT1-201ENST00000316694 DLEU1O43261 78 aa17.64■□□□□ 0.41
SHMT1-201ENST00000316694 LOXP28300 417 aaPredicted RBP17.64■□□□□ 0.41
SHMT1-201ENST00000316694 RNASEKQ6P5S7 137 aaKnown RBP17.64■□□□□ 0.41
SHMT1-201ENST00000316694 TXN2Q99757 166 aa17.64■□□□□ 0.41
SHMT1-201ENST00000316694 CHRDL1Q9BU40 450 aa17.64■□□□□ 0.41
SHMT1-201ENST00000316694 C7orf69Q9H7B7 122 aa17.64■□□□□ 0.41
SHMT1-201ENST00000316694 ABCA1O95477 2261 aa17.64■□□□□ 0.41
SHMT1-201ENST00000316694 THBDP07204 575 aa17.63■□□□□ 0.41
SHMT1-201ENST00000316694 UQCR10Q9UDW1 63 aa17.63■□□□□ 0.41
SHMT1-201ENST00000316694 IGLC7A0M8Q6 106 aa17.63■□□□□ 0.41
SHMT1-201ENST00000316694 VWC2LB2RUY7 222 aa17.63■□□□□ 0.41
SHMT1-201ENST00000316694 HYPMO75409 117 aa17.63■□□□□ 0.41
SHMT1-201ENST00000316694 MC5RP33032 325 aa17.63■□□□□ 0.41
SHMT1-201ENST00000316694 DLX1P56177 255 aa17.63■□□□□ 0.41
SHMT1-201ENST00000316694 PRB3Q04118 309 aaPredicted RBP17.63■□□□□ 0.41
SHMT1-201ENST00000316694 MRGPRG-AS1Q2M3A8 158 aa17.63■□□□□ 0.41
SHMT1-201ENST00000316694 LEMD1Q68G75 181 aa17.63■□□□□ 0.41
SHMT1-201ENST00000316694 Q6ZN92 141 aa17.63■□□□□ 0.41
SHMT1-201ENST00000316694 TCF24Q7RTU0 167 aa17.63■□□□□ 0.41
SHMT1-201ENST00000316694 STXBP6Q8NFX7 210 aa17.63■□□□□ 0.41
SHMT1-201ENST00000316694 OR2D3Q8NGH3 330 aa17.63■□□□□ 0.41
SHMT1-201ENST00000316694 ZNF596Q8TC21 504 aa17.63■□□□□ 0.41
SHMT1-201ENST00000316694 CLEC7AQ9BXN2 247 aa17.63■□□□□ 0.41
SHMT1-201ENST00000316694 M0R2Z0 102 aa17.62■□□□□ 0.41
SHMT1-201ENST00000316694 NBEAP1P0C6P0 100 aa17.62■□□□□ 0.41
SHMT1-201ENST00000316694 IGLC2P0DOY2 106 aa17.62■□□□□ 0.41
SHMT1-201ENST00000316694 IGLC3P0DOY3 106 aa17.62■□□□□ 0.41
SHMT1-201ENST00000316694 MAJINQ3KP22 176 aa17.62■□□□□ 0.41
SHMT1-201ENST00000316694 ETFRF1Q6IPR1 90 aa17.62■□□□□ 0.41
SHMT1-201ENST00000316694 ALKBH7Q9BT30 221 aaPredicted RBP17.62■□□□□ 0.41
SHMT1-201ENST00000316694 GOLT1BQ9Y3E0 138 aa17.62■□□□□ 0.41
SHMT1-201ENST00000316694 NPSP0C0P6 89 aa17.62■□□□□ 0.41
SHMT1-201ENST00000316694 C22orf15Q8WYQ4 148 aa17.62■□□□□ 0.41
SHMT1-201ENST00000316694 IGHV1-8P0DP01 117 aa17.61■□□□□ 0.41
SHMT1-201ENST00000316694 CNTFRP26992 372 aa17.61■□□□□ 0.41
SHMT1-201ENST00000316694 C8orf31Q8N9H6 132 aa17.61■□□□□ 0.41
SHMT1-201ENST00000316694 FAM87AP0C7U9 286 aa17.61■□□□□ 0.41
SHMT1-201ENST00000316694 DLX6P56179 175 aa17.61■□□□□ 0.41
SHMT1-201ENST00000316694 COL5A1-AS1Q5SY13 56 aa17.61■□□□□ 0.41
SHMT1-201ENST00000316694 GPR82Q96P67 336 aa17.61■□□□□ 0.41
SHMT1-201ENST00000316694 GSX1Q9H4S2 264 aaPredicted RBP17.61■□□□□ 0.41
SHMT1-201ENST00000316694 FAM181BA6NEQ2 426 aa17.6■□□□□ 0.41
SHMT1-201ENST00000316694 PRRG2O14669 202 aa17.6■□□□□ 0.41
SHMT1-201ENST00000316694 TNFRSF13BO14836 293 aaPredicted RBP17.6■□□□□ 0.41
SHMT1-201ENST00000316694 LGALS7P47929 136 aa17.6■□□□□ 0.41
SHMT1-201ENST00000316694 HNRNPA3P51991 378 aaKnown RBP17.6■□□□□ 0.41
SHMT1-201ENST00000316694 TMEM155Q4W5P6 130 aa17.6■□□□□ 0.41
SHMT1-201ENST00000316694 LINC00322Q6ZN03 302 aaPredicted RBP17.6■□□□□ 0.41
SHMT1-201ENST00000316694 DYNLRB1Q9NP97 96 aa17.6■□□□□ 0.41
SHMT1-201ENST00000316694 RPL27AP46776 148 aaKnown RBP17.6■□□□□ 0.41
SHMT1-201ENST00000316694 ZNF137PP52743 207 aa17.6■□□□□ 0.41
SHMT1-201ENST00000316694 CRYGCP07315 174 aa17.59■□□□□ 0.41
SHMT1-201ENST00000316694 KLF5Q13887 457 aaPredicted RBP17.59■□□□□ 0.41
SHMT1-201ENST00000316694 Q56UQ5 140 aa17.59■□□□□ 0.41
SHMT1-201ENST00000316694 ASCL5Q7RTU5 278 aa17.59■□□□□ 0.41
SHMT1-201ENST00000316694 TRGV9Q99603 122 aa17.59■□□□□ 0.41
SHMT1-201ENST00000316694 KLF12Q9Y4X4 402 aa17.59■□□□□ 0.41
SHMT1-201ENST00000316694 TCF15Q12870 199 aa17.59■□□□□ 0.41
SHMT1-201ENST00000316694 RNASE6Q93091 150 aaKnown RBP17.59■□□□□ 0.41
SHMT1-201ENST00000316694 RPP21Q9H633 154 aaKnown RBP17.59■□□□□ 0.41
SHMT1-201ENST00000316694 OR2J3O76001 311 aa17.58■□□□□ 0.41
SHMT1-201ENST00000316694 EBLN2Q6P2I7 272 aa17.58■□□□□ 0.41
SHMT1-201ENST00000316694 ATP5L2Q7Z4Y8 100 aa17.58■□□□□ 0.41
SHMT1-201ENST00000316694 KLHDC1Q8N7A1 406 aa17.58■□□□□ 0.41
SHMT1-201ENST00000316694 TMEM133Q9H2Q1 129 aa17.58■□□□□ 0.41
SHMT1-201ENST00000316694 APC2O95996 2303 aa17.58■□□□□ 0.4
SHMT1-201ENST00000316694 A0A1B0GXF2 115 aa17.58■□□□□ 0.4
SHMT1-201ENST00000316694 CD24P25063 80 aa17.58■□□□□ 0.4
SHMT1-201ENST00000316694 CA7P43166 264 aa17.58■□□□□ 0.4
SHMT1-201ENST00000316694 ABHD17AQ96GS6 310 aa17.58■□□□□ 0.4
SHMT1-201ENST00000316694 Q9H3A6 140 aa17.58■□□□□ 0.4
SHMT1-201ENST00000316694 ZNF835Q9Y2P0 537 aa17.58■□□□□ 0.4
SHMT1-201ENST00000316694 MALRD1Q5VYJ5 2156 aa17.58■□□□□ 0.4
SHMT1-201ENST00000316694 TPRP12270 2363 aaKnown RBP17.57■□□□□ 0.4
SHMT1-201ENST00000316694 GP9P14770 177 aa17.57■□□□□ 0.4
SHMT1-201ENST00000316694 HBBP68871 147 aa17.57■□□□□ 0.4
SHMT1-201ENST00000316694 C5orf17Q8NAS9 161 aa17.57■□□□□ 0.4
SHMT1-201ENST00000316694 TMEM116Q8NCL8 245 aa17.57■□□□□ 0.4
SHMT1-201ENST00000316694 MLST8Q9BVC4 326 aa17.57■□□□□ 0.4
SHMT1-201ENST00000316694 P01737 135 aa17.57■□□□□ 0.4
SHMT1-201ENST00000316694 FOXA3P55318 350 aaPredicted RBP17.57■□□□□ 0.4
SHMT1-201ENST00000316694 GAGE1Q13065 139 aa17.57■□□□□ 0.4
SHMT1-201ENST00000316694 TEX45Q8NA69 505 aa17.57■□□□□ 0.4
SHMT1-201ENST00000316694 PGLYRP4Q96LB8 373 aa17.57■□□□□ 0.4
SHMT1-201ENST00000316694 PMCHL1Q16048 86 aa17.56■□□□□ 0.4
Retrieved 100 of 20,778 RNA–protein pairs in 39.7 ms