RNA–Protein interactions for RNA: ENST00000625244.2

SNX1-214, Transcript of sorting nexin 1, humanhuman

TSL 5 BASIC

Gene SNX1, Length 324 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNX1-214ENST00000625244 PLEKHA2Q9HB19 425 aa9.86□□□□□ -0.83
SNX1-214ENST00000625244 FAM212BQ9NTI7 297 aaPredicted RBP9.86□□□□□ -0.83
SNX1-214ENST00000625244 TMEM14BQ9NUH8 114 aa9.86□□□□□ -0.83
SNX1-214ENST00000625244 COMMD9Q9P000 198 aa9.86□□□□□ -0.83
SNX1-214ENST00000625244 IGHV3OR16-13A0A075B7E8 117 aa9.85□□□□□ -0.83
SNX1-214ENST00000625244 IGHV3-74A0A0B4J1X5 117 aa9.85□□□□□ -0.83
SNX1-214ENST00000625244 MAS1LP35410 378 aa9.85□□□□□ -0.83
SNX1-214ENST00000625244 PUSL1Q8N0Z8 303 aaKnown RBP9.85□□□□□ -0.83
SNX1-214ENST00000625244 TMEM116Q8NCL8 245 aa9.85□□□□□ -0.83
SNX1-214ENST00000625244 FRZBQ92765 325 aa9.85□□□□□ -0.83
SNX1-214ENST00000625244 KCNIP3Q9Y2W7 256 aa9.85□□□□□ -0.83
SNX1-214ENST00000625244 LRP1Q07954 4544 aaKnown RBP9.84□□□□□ -0.83
SNX1-214ENST00000625244 C3orf85A0A1B0GTC6 90 aa9.84□□□□□ -0.83
SNX1-214ENST00000625244 DFFBO76075 338 aa9.84□□□□□ -0.83
SNX1-214ENST00000625244 SPP1P10451 314 aa9.84□□□□□ -0.83
SNX1-214ENST00000625244 LPAR6P43657 344 aa9.84□□□□□ -0.83
SNX1-214ENST00000625244 TRIM16LQ309B1 348 aa9.84□□□□□ -0.83
SNX1-214ENST00000625244 VN1R17PQ8TDU5 208 aa9.84□□□□□ -0.83
SNX1-214ENST00000625244 SDHCQ99643 169 aaPredicted RBP9.84□□□□□ -0.83
SNX1-214ENST00000625244 MDFICQ9P1T7 246 aa9.84□□□□□ -0.83
SNX1-214ENST00000625244 GPR132Q9UNW8 380 aa9.84□□□□□ -0.83
SNX1-214ENST00000625244 IGHV3-21A0A0B4J1V1 117 aa9.83□□□□□ -0.84
SNX1-214ENST00000625244 PIGBOS1A0A0B4J2F0 54 aa9.83□□□□□ -0.84
SNX1-214ENST00000625244 MARCH11A6NNE9 402 aa9.83□□□□□ -0.84
SNX1-214ENST00000625244 ANXA3P12429 323 aa9.83□□□□□ -0.84
SNX1-214ENST00000625244 FAM3BP58499 235 aaPredicted RBP9.83□□□□□ -0.84
SNX1-214ENST00000625244 PAFAH1B2P68402 229 aa9.83□□□□□ -0.84
SNX1-214ENST00000625244 SPSB3Q6PJ21 355 aa9.83□□□□□ -0.84
SNX1-214ENST00000625244 TCF24Q7RTU0 167 aa9.83□□□□□ -0.84
SNX1-214ENST00000625244 TMED4Q7Z7H5 227 aa9.83□□□□□ -0.84
SNX1-214ENST00000625244 RNASE11Q8TAA1 199 aaKnown RBP9.83□□□□□ -0.84
SNX1-214ENST00000625244 MS4A6AQ9H2W1 248 aa9.83□□□□□ -0.84
SNX1-214ENST00000625244 BET1LQ9NYM9 111 aa9.83□□□□□ -0.84
SNX1-214ENST00000625244 THYN1Q9P016 225 aa9.83□□□□□ -0.84
SNX1-214ENST00000625244 IGLC7A0M8Q6 106 aa9.82□□□□□ -0.84
SNX1-214ENST00000625244 KNCNA6PVL3 124 aa9.82□□□□□ -0.84
SNX1-214ENST00000625244 LYRM1O43325 122 aa9.82□□□□□ -0.84
SNX1-214ENST00000625244 SNAPC5O75971 98 aa9.82□□□□□ -0.84
SNX1-214ENST00000625244 KRASP01116 189 aa9.82□□□□□ -0.84
SNX1-214ENST00000625244 AKR1C4P17516 323 aa9.82□□□□□ -0.84
SNX1-214ENST00000625244 AKR1C2P52895 323 aa9.82□□□□□ -0.84
SNX1-214ENST00000625244 DHODHQ02127 395 aa9.82□□□□□ -0.84
SNX1-214ENST00000625244 MZT2BQ6NZ67 158 aa9.82□□□□□ -0.84
SNX1-214ENST00000625244 H2BFWTQ7Z2G1 175 aa9.82□□□□□ -0.84
SNX1-214ENST00000625244 ZNRF2Q8NHG8 242 aa9.82□□□□□ -0.84
SNX1-214ENST00000625244 MRGPRFQ96AM1 343 aa9.82□□□□□ -0.84
SNX1-214ENST00000625244 TSC22D3Q99576 134 aa9.82□□□□□ -0.84
SNX1-214ENST00000625244 RTBDNQ9BSG5 229 aaPredicted RBP9.82□□□□□ -0.84
SNX1-214ENST00000625244 NAA60Q9H7X0 242 aa9.82□□□□□ -0.84
SNX1-214ENST00000625244 TMEM140Q9NV12 185 aa9.82□□□□□ -0.84
SNX1-214ENST00000625244 TMED3Q9Y3Q3 217 aa9.82□□□□□ -0.84
SNX1-214ENST00000625244 CRYM-AS1A6NIL9 109 aa9.81□□□□□ -0.84
SNX1-214ENST00000625244 DNASE2O00115 360 aaPredicted RBP9.81□□□□□ -0.84
SNX1-214ENST00000625244 NUPL2O15504 423 aaKnown RBP9.81□□□□□ -0.84
SNX1-214ENST00000625244 SPART-AS1P0CW21 52 aa9.81□□□□□ -0.84
SNX1-214ENST00000625244 HLA-GP17693 338 aa9.81□□□□□ -0.84
SNX1-214ENST00000625244 G6PCP35575 357 aa9.81□□□□□ -0.84
SNX1-214ENST00000625244 BRWD1-AS2P59051 145 aa9.81□□□□□ -0.84
SNX1-214ENST00000625244 OR2B8PP59922 312 aa9.81□□□□□ -0.84
SNX1-214ENST00000625244 RPL8P62917 257 aaKnown RBP9.81□□□□□ -0.84
SNX1-214ENST00000625244 SRPXP78539 464 aa9.81□□□□□ -0.84
SNX1-214ENST00000625244 POU2AF1Q16633 256 aa9.81□□□□□ -0.84
SNX1-214ENST00000625244 TMEM88Q6PEY1 159 aa9.81□□□□□ -0.84
SNX1-214ENST00000625244 LILRB2Q8N423 598 aa9.81□□□□□ -0.84
SNX1-214ENST00000625244 RRNAD1Q96FB5 475 aaKnown RBP9.81□□□□□ -0.84
SNX1-214ENST00000625244 TP53RKQ96S44 253 aa9.81□□□□□ -0.84
SNX1-214ENST00000625244 COMMD5Q9GZQ3 224 aa9.81□□□□□ -0.84
SNX1-214ENST00000625244 UPK1BO75841 260 aa9.8□□□□□ -0.84
SNX1-214ENST00000625244 NDUFB6O95139 128 aa9.8□□□□□ -0.84
SNX1-214ENST00000625244 OR5AC1P0C628 307 aa9.8□□□□□ -0.84
SNX1-214ENST00000625244 HTN3P15516 51 aa9.8□□□□□ -0.84
SNX1-214ENST00000625244 VAMP1P23763 118 aa9.8□□□□□ -0.84
SNX1-214ENST00000625244 CCR6P51684 374 aa9.8□□□□□ -0.84
SNX1-214ENST00000625244 EMP1P54849 157 aa9.8□□□□□ -0.84
SNX1-214ENST00000625244 DEFA1P59665 94 aa9.8□□□□□ -0.84
SNX1-214ENST00000625244 DEFA3P59666 94 aa9.8□□□□□ -0.84
SNX1-214ENST00000625244 SP6Q3SY56 376 aa9.8□□□□□ -0.84
SNX1-214ENST00000625244 TMEM128Q5BJH2 165 aa9.8□□□□□ -0.84
SNX1-214ENST00000625244 UBAC2Q8NBM4 344 aa9.8□□□□□ -0.84
SNX1-214ENST00000625244 OR10C1Q96KK4 312 aa9.8□□□□□ -0.84
SNX1-214ENST00000625244 TMEM222Q9H0R3 208 aa9.8□□□□□ -0.84
SNX1-214ENST00000625244 FKBP11Q9NYL4 201 aa9.8□□□□□ -0.84
SNX1-214ENST00000625244 C21orf62Q9NYP8 219 aa9.8□□□□□ -0.84
SNX1-214ENST00000625244 FAT3Q8TDW7 4589 aa9.79□□□□□ -0.84
SNX1-214ENST00000625244 TRAV14DV4A0A0A6YYC5 116 aa9.79□□□□□ -0.84
SNX1-214ENST00000625244 UPK2O00526 184 aa9.79□□□□□ -0.84
SNX1-214ENST00000625244 YIF1AO95070 293 aa9.79□□□□□ -0.84
SNX1-214ENST00000625244 CTSGP08311 255 aa9.79□□□□□ -0.84
SNX1-214ENST00000625244 FGF2P09038 288 aa9.79□□□□□ -0.84
SNX1-214ENST00000625244 UCP1P25874 307 aa9.79□□□□□ -0.84
SNX1-214ENST00000625244 CADM3Q8N126 398 aa9.79□□□□□ -0.84
SNX1-214ENST00000625244 OR4A16Q8NH70 328 aa9.79□□□□□ -0.84
SNX1-214ENST00000625244 SCARB1Q8WTV0 552 aa9.79□□□□□ -0.84
SNX1-214ENST00000625244 RBPMSQ93062 196 aaKnown RBP9.79□□□□□ -0.84
SNX1-214ENST00000625244 ATG101Q9BSB4 218 aa9.79□□□□□ -0.84
SNX1-214ENST00000625244 PDCD10Q9BUL8 212 aa9.79□□□□□ -0.84
SNX1-214ENST00000625244 PRNDQ9UKY0 176 aa9.79□□□□□ -0.84
SNX1-214ENST00000625244 FAM240BA0A1B0GVZ2 78 aa9.78□□□□□ -0.84
SNX1-214ENST00000625244 APOHP02749 345 aaPredicted RBP9.78□□□□□ -0.84
SNX1-214ENST00000625244 SMR3BP02814 79 aaPredicted RBP9.78□□□□□ -0.84
Retrieved 100 of 20,778 RNA–protein pairs in 54.8 ms