RNA–Protein interactions for RNA: ENST00000552491.5

LIMA1-212, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene LIMA1, Length 2,652 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-212ENST00000552491 HINT1P49773 126 aaPredicted RBP4.39□□□□□ -1.71
LIMA1-212ENST00000552491 MFAP2P55001 183 aa4.39□□□□□ -1.71
LIMA1-212ENST00000552491 GNG5P63218 68 aa4.39□□□□□ -1.71
LIMA1-212ENST00000552491 UBE2L3P68036 154 aaKnown RBP4.39□□□□□ -1.71
LIMA1-212ENST00000552491 CD69Q07108 199 aa4.39□□□□□ -1.71
LIMA1-212ENST00000552491 HES3Q5TGS1 186 aa4.39□□□□□ -1.71
LIMA1-212ENST00000552491 STUMQ69YW2 141 aa4.39□□□□□ -1.71
LIMA1-212ENST00000552491 SEM1Q6ZVN7 128 aa4.39□□□□□ -1.71
LIMA1-212ENST00000552491 NUDT10Q8NFP7 164 aa4.39□□□□□ -1.71
LIMA1-212ENST00000552491 FDCSPQ8NFU4 85 aa4.39□□□□□ -1.71
LIMA1-212ENST00000552491 OR1L8Q8NGR8 309 aa4.39□□□□□ -1.71
LIMA1-212ENST00000552491 ORAOV1Q8WV07 137 aa4.39□□□□□ -1.71
LIMA1-212ENST00000552491 NUDT11Q96G61 164 aa4.39□□□□□ -1.71
LIMA1-212ENST00000552491 FNDC4Q9H6D8 234 aaPredicted RBP4.39□□□□□ -1.71
LIMA1-212ENST00000552491 C7orf69Q9H7B7 122 aa4.39□□□□□ -1.71
LIMA1-212ENST00000552491 PLSCR4Q9NRQ2 329 aa4.39□□□□□ -1.71
LIMA1-212ENST00000552491 TNFRSF19Q9NS68 423 aa4.39□□□□□ -1.71
LIMA1-212ENST00000552491 MRPS16Q9Y3D3 137 aaKnown RBP4.39□□□□□ -1.71
LIMA1-212ENST00000552491 DMXL1Q9Y485 3027 aa4.38□□□□□ -1.71
LIMA1-212ENST00000552491 PKDREJQ9NTG1 2253 aa4.38□□□□□ -1.71
LIMA1-212ENST00000552491 IGKV1D-37A0A075B6S9 117 aa4.38□□□□□ -1.71
LIMA1-212ENST00000552491 C2orf70A6NJV1 201 aa4.38□□□□□ -1.71
LIMA1-212ENST00000552491 CGB1A6NKQ9 187 aa4.38□□□□□ -1.71
LIMA1-212ENST00000552491 M0QZ24 198 aa4.38□□□□□ -1.71
LIMA1-212ENST00000552491 IGLL1P15814 213 aa4.38□□□□□ -1.71
LIMA1-212ENST00000552491 CCL11P51671 97 aa4.38□□□□□ -1.71
LIMA1-212ENST00000552491 KLF5Q13887 457 aaPredicted RBP4.38□□□□□ -1.71
LIMA1-212ENST00000552491 Q56UQ5 140 aa4.38□□□□□ -1.71
LIMA1-212ENST00000552491 C10orf55Q5SWW7 151 aa4.38□□□□□ -1.71
LIMA1-212ENST00000552491 PRR27Q6MZM9 219 aa4.38□□□□□ -1.71
LIMA1-212ENST00000552491 LINC00322Q6ZN03 302 aaPredicted RBP4.38□□□□□ -1.71
LIMA1-212ENST00000552491 C22orf34Q6ZV56 151 aa4.38□□□□□ -1.71
LIMA1-212ENST00000552491 BHLHA15Q7RTS1 189 aaPredicted RBP4.38□□□□□ -1.71
LIMA1-212ENST00000552491 ZNF329Q86UD4 541 aa4.38□□□□□ -1.71
LIMA1-212ENST00000552491 FAM169BQ8N8A8 192 aa4.38□□□□□ -1.71
LIMA1-212ENST00000552491 OR4F17Q8NGA8 305 aa4.38□□□□□ -1.71
LIMA1-212ENST00000552491 OR5B3Q8NH48 314 aa4.38□□□□□ -1.71
LIMA1-212ENST00000552491 FAM222BQ8WU58 562 aa4.38□□□□□ -1.71
LIMA1-212ENST00000552491 CACNG8Q8WXS5 425 aa4.38□□□□□ -1.71
LIMA1-212ENST00000552491 GRAMD2BQ96HH9 432 aa4.38□□□□□ -1.71
LIMA1-212ENST00000552491 GAFA1Q96PS6 74 aa4.38□□□□□ -1.71
LIMA1-212ENST00000552491 CCL13Q99616 98 aa4.38□□□□□ -1.71
LIMA1-212ENST00000552491 ALKBH7Q9BT30 221 aaPredicted RBP4.38□□□□□ -1.71
LIMA1-212ENST00000552491 AMMECR1Q9Y4X0 333 aaPredicted RBP4.38□□□□□ -1.71
LIMA1-212ENST00000552491 C20orf202A1L168 122 aa4.38□□□□□ -1.71
LIMA1-212ENST00000552491 PRR33A8MZF0 331 aa4.38□□□□□ -1.71
LIMA1-212ENST00000552491 M0R1B8 84 aa4.38□□□□□ -1.71
LIMA1-212ENST00000552491 HSBP1O75506 76 aa4.38□□□□□ -1.71
LIMA1-212ENST00000552491 FCN3O75636 299 aa4.38□□□□□ -1.71
LIMA1-212ENST00000552491 REG1BP48304 166 aa4.38□□□□□ -1.71
LIMA1-212ENST00000552491 CAMPP49913 170 aa4.38□□□□□ -1.71
LIMA1-212ENST00000552491 WT1-ASQ06250 92 aa4.38□□□□□ -1.71
LIMA1-212ENST00000552491 DIAPH2-AS1Q14236 149 aa4.38□□□□□ -1.71
LIMA1-212ENST00000552491 TBR1Q16650 682 aa4.38□□□□□ -1.71
LIMA1-212ENST00000552491 SLC25A48Q6ZT89 311 aaKnown RBP4.38□□□□□ -1.71
LIMA1-212ENST00000552491 LINC00173Q6ZV60 143 aa4.38□□□□□ -1.71
LIMA1-212ENST00000552491 Q71RC1 249 aaPredicted RBP4.38□□□□□ -1.71
LIMA1-212ENST00000552491 RPRMLQ8N4K4 120 aa4.38□□□□□ -1.71
LIMA1-212ENST00000552491 OR8B3Q8NGG8 313 aa4.38□□□□□ -1.71
LIMA1-212ENST00000552491 RNASE8Q8TDE3 154 aaKnown RBP4.38□□□□□ -1.71
LIMA1-212ENST00000552491 OR8B2Q96RD0 313 aa4.38□□□□□ -1.71
LIMA1-212ENST00000552491 CHRDL1Q9BU40 450 aa4.38□□□□□ -1.71
LIMA1-212ENST00000552491 MRPL20Q9BYC9 149 aaKnown RBP4.38□□□□□ -1.71
LIMA1-212ENST00000552491 NDUFA4L2Q9NRX3 87 aa4.38□□□□□ -1.71
LIMA1-212ENST00000552491 CLEC5AQ9NY25 188 aa4.38□□□□□ -1.71
LIMA1-212ENST00000552491 BET1LQ9NYM9 111 aa4.38□□□□□ -1.71
LIMA1-212ENST00000552491 ZZEF1O43149 2961 aa4.37□□□□□ -1.71
LIMA1-212ENST00000552491 TRAV9-2A0A087WT02 112 aa4.37□□□□□ -1.71
LIMA1-212ENST00000552491 HIGD1CA8MV81 97 aa4.37□□□□□ -1.71
LIMA1-212ENST00000552491 PEX7O00628 323 aa4.37□□□□□ -1.71
LIMA1-212ENST00000552491 OR2J3O76001 311 aa4.37□□□□□ -1.71
LIMA1-212ENST00000552491 FAM120AOSQ5T036 256 aa4.37□□□□□ -1.71
LIMA1-212ENST00000552491 RNASEKQ6P5S7 137 aaKnown RBP4.37□□□□□ -1.71
LIMA1-212ENST00000552491 TCF24Q7RTU0 167 aa4.37□□□□□ -1.71
LIMA1-212ENST00000552491 NPIPB3Q92617 1050 aa4.37□□□□□ -1.71
LIMA1-212ENST00000552491 ST6GALNAC6Q969X2 333 aa4.37□□□□□ -1.71
LIMA1-212ENST00000552491 FXYD5Q96DB9 178 aa4.37□□□□□ -1.71
LIMA1-212ENST00000552491 ZNF714Q96N38 554 aa4.37□□□□□ -1.71
LIMA1-212ENST00000552491 LINC00574Q9H8X3 128 aa4.37□□□□□ -1.71
LIMA1-212ENST00000552491 SAP30LQ9HAJ7 183 aa4.37□□□□□ -1.71
LIMA1-212ENST00000552491 RPUSD1Q9UJJ7 312 aaKnown RBP4.37□□□□□ -1.71
LIMA1-212ENST00000552491 CNOT1A5YKK6 2376 aaKnown RBP4.37□□□□□ -1.71
LIMA1-212ENST00000552491 PCNX1Q96RV3 2341 aa4.37□□□□□ -1.71
LIMA1-212ENST00000552491 IGHV2-26A0A0B4J1V2 119 aa4.37□□□□□ -1.71
LIMA1-212ENST00000552491 A0A1B0GXF2 115 aa4.37□□□□□ -1.71
LIMA1-212ENST00000552491 H0YJW9 148 aa4.37□□□□□ -1.71
LIMA1-212ENST00000552491 M0R2Z0 102 aa4.37□□□□□ -1.71
LIMA1-212ENST00000552491 HIST1H1EP10412 219 aaKnown RBP4.37□□□□□ -1.71
LIMA1-212ENST00000552491 MYCNOSP40205 109 aa4.37□□□□□ -1.71
LIMA1-212ENST00000552491 GATA4P43694 442 aa4.37□□□□□ -1.71
LIMA1-212ENST00000552491 PTTG1IPP53801 180 aa4.37□□□□□ -1.71
LIMA1-212ENST00000552491 KLF3P57682 345 aaPredicted RBP4.37□□□□□ -1.71
LIMA1-212ENST00000552491 TMEM30BQ3MIR4 351 aa4.37□□□□□ -1.71
LIMA1-212ENST00000552491 ZNF474Q6S9Z5 364 aaPredicted RBP4.37□□□□□ -1.71
LIMA1-212ENST00000552491 ERASQ7Z444 233 aa4.37□□□□□ -1.71
LIMA1-212ENST00000552491 PAXXQ9BUH6 204 aa4.37□□□□□ -1.71
LIMA1-212ENST00000552491 ASCL3Q9NQ33 180 aa4.37□□□□□ -1.71
LIMA1-212ENST00000552491 IGLV3-9A0A075B6K5 115 aa4.36□□□□□ -1.71
LIMA1-212ENST00000552491 LOC105371242A0A075B767 164 aa4.36□□□□□ -1.71
LIMA1-212ENST00000552491 INS-IGF2F8WCM5 200 aa4.36□□□□□ -1.71
Retrieved 100 of 20,778 RNA–protein pairs in 78.3 ms