RNA–Protein interactions for RNA: ENST00000528455.5

CD44-228, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 687 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-228ENST00000528455 STX12Q86Y82 276 aa5.76□□□□□ -1.49
CD44-228ENST00000528455 KCNRGQ8N5I3 272 aa5.76□□□□□ -1.49
CD44-228ENST00000528455 RNF152Q8N8N0 203 aa5.76□□□□□ -1.49
CD44-228ENST00000528455 VN1R17PQ8TDU5 208 aa5.76□□□□□ -1.49
CD44-228ENST00000528455 CXorf58Q96LI9 332 aa5.76□□□□□ -1.49
CD44-228ENST00000528455 NOL4LQ96MY1 436 aaPredicted RBP5.76□□□□□ -1.49
CD44-228ENST00000528455 OR4C12Q96R67 309 aa5.76□□□□□ -1.49
CD44-228ENST00000528455 TXN2Q99757 166 aa5.76□□□□□ -1.49
CD44-228ENST00000528455 LINC00527Q9UJ94 153 aa5.76□□□□□ -1.49
CD44-228ENST00000528455 DMRT1Q9Y5R6 373 aa5.76□□□□□ -1.49
CD44-228ENST00000528455 TRBV7-1A0A0A6YYK4 115 aa5.75□□□□□ -1.49
CD44-228ENST00000528455 IGSF23A1L1A6 192 aa5.75□□□□□ -1.49
CD44-228ENST00000528455 RNF222A6NCQ9 220 aa5.75□□□□□ -1.49
CD44-228ENST00000528455 FAM223BA6NKX1 122 aa5.75□□□□□ -1.49
CD44-228ENST00000528455 PRSS46E5RG02 174 aa5.75□□□□□ -1.49
CD44-228ENST00000528455 H3BP45 60 aa5.75□□□□□ -1.49
CD44-228ENST00000528455 I3L2K1 104 aa5.75□□□□□ -1.49
CD44-228ENST00000528455 ARPC5O15511 151 aa5.75□□□□□ -1.49
CD44-228ENST00000528455 DFFBO76075 338 aa5.75□□□□□ -1.49
CD44-228ENST00000528455 CST7O76096 145 aa5.75□□□□□ -1.49
CD44-228ENST00000528455 HNRNPCP07910 306 aaKnown RBP eCLIP5.75□□□□□ -1.49
CD44-228ENST00000528455 PF4V1P10720 104 aa5.75□□□□□ -1.49
CD44-228ENST00000528455 FCGR2BP31994 310 aaPredicted RBP5.75□□□□□ -1.49
CD44-228ENST00000528455 EIF2B2P49770 351 aaKnown RBP5.75□□□□□ -1.49
CD44-228ENST00000528455 AP2S1P53680 142 aaPredicted RBP5.75□□□□□ -1.49
CD44-228ENST00000528455 MFAP4P55083 255 aa5.75□□□□□ -1.49
CD44-228ENST00000528455 DLK1P80370 383 aa5.75□□□□□ -1.49
CD44-228ENST00000528455 ARL16Q0P5N6 197 aa5.75□□□□□ -1.49
CD44-228ENST00000528455 AWAT1Q58HT5 328 aa5.75□□□□□ -1.49
CD44-228ENST00000528455 FAM209BQ5JX69 171 aa5.75□□□□□ -1.49
CD44-228ENST00000528455 OR8G2PQ6IF36 304 aa5.75□□□□□ -1.49
CD44-228ENST00000528455 FAM223AQ8IWN6 122 aa5.75□□□□□ -1.49
CD44-228ENST00000528455 TMEM116Q8NCL8 245 aa5.75□□□□□ -1.49
CD44-228ENST00000528455 OR1S2Q8NGQ3 325 aa5.75□□□□□ -1.49
CD44-228ENST00000528455 WIPF2Q8TF74 440 aaPredicted RBP5.75□□□□□ -1.49
CD44-228ENST00000528455 ZC4H2Q9NQZ6 224 aa5.75□□□□□ -1.49
CD44-228ENST00000528455 ZNF355PQ9NSJ1 428 aa5.75□□□□□ -1.49
CD44-228ENST00000528455 GAR1Q9NY12 217 aaKnown RBP5.75□□□□□ -1.49
CD44-228ENST00000528455 PAIP2BQ9ULR5 123 aaKnown RBP5.75□□□□□ -1.49
CD44-228ENST00000528455 HSPB11Q9Y547 144 aa5.75□□□□□ -1.49
CD44-228ENST00000528455 TRAV30A0A087WSZ9 112 aa5.74□□□□□ -1.49
CD44-228ENST00000528455 K7EIM0 57 aa5.74□□□□□ -1.49
CD44-228ENST00000528455 JTBO76095 146 aa5.74□□□□□ -1.49
CD44-228ENST00000528455 NDUFB8O95169 186 aa5.74□□□□□ -1.49
CD44-228ENST00000528455 MT-CO2P00403 227 aa5.74□□□□□ -1.49
CD44-228ENST00000528455 TRGV3P03979 118 aa5.74□□□□□ -1.49
CD44-228ENST00000528455 CXCL2P19875 107 aa5.74□□□□□ -1.49
CD44-228ENST00000528455 MDKP21741 143 aaPredicted RBP5.74□□□□□ -1.49
CD44-228ENST00000528455 CDX1P47902 265 aaPredicted RBP5.74□□□□□ -1.49
CD44-228ENST00000528455 NPBWR1P48145 328 aa5.74□□□□□ -1.49
CD44-228ENST00000528455 ATP5G2Q06055 141 aa5.74□□□□□ -1.49
CD44-228ENST00000528455 SLC38A11Q08AI6 406 aa5.74□□□□□ -1.49
CD44-228ENST00000528455 KIAA0141Q14154 515 aaPredicted RBP5.74□□□□□ -1.49
CD44-228ENST00000528455 GAMTQ14353 236 aa5.74□□□□□ -1.49
CD44-228ENST00000528455 VWC2Q2TAL6 325 aa5.74□□□□□ -1.49
CD44-228ENST00000528455 LAMTOR1Q6IAA8 161 aa5.74□□□□□ -1.49
CD44-228ENST00000528455 TMUB2Q71RG4 321 aa5.74□□□□□ -1.49
CD44-228ENST00000528455 TMEM144Q7Z5S9 345 aa5.74□□□□□ -1.49
CD44-228ENST00000528455 KLHDC1Q8N7A1 406 aa5.74□□□□□ -1.49
CD44-228ENST00000528455 TMEM217Q8N7C4 229 aa5.74□□□□□ -1.49
CD44-228ENST00000528455 ZNF491Q8N8L2 437 aa5.74□□□□□ -1.49
CD44-228ENST00000528455 OR5AU1Q8NGC0 362 aa5.74□□□□□ -1.49
CD44-228ENST00000528455 OR5C1Q8NGR4 320 aa5.74□□□□□ -1.49
CD44-228ENST00000528455 OR4X1Q8NH49 305 aa5.74□□□□□ -1.49
CD44-228ENST00000528455 SCARB1Q8WTV0 552 aa5.74□□□□□ -1.49
CD44-228ENST00000528455 ST8SIA2Q92186 375 aa5.74□□□□□ -1.49
CD44-228ENST00000528455 UBE2E2Q96LR5 201 aa5.74□□□□□ -1.49
CD44-228ENST00000528455 MS4A10Q96PG2 267 aa5.74□□□□□ -1.49
CD44-228ENST00000528455 ZNF747Q9BV97 191 aa5.74□□□□□ -1.49
CD44-228ENST00000528455 FNDC4Q9H6D8 234 aaPredicted RBP5.74□□□□□ -1.49
CD44-228ENST00000528455 PKD1L1Q8TDX9 2849 aa5.73□□□□□ -1.49
CD44-228ENST00000528455 MPDU1O75352 247 aa5.73□□□□□ -1.49
CD44-228ENST00000528455 OR2J3O76001 311 aa5.73□□□□□ -1.49
CD44-228ENST00000528455 IFNA5P01569 189 aa5.73□□□□□ -1.49
CD44-228ENST00000528455 PRH1P02810 166 aa5.73□□□□□ -1.49
CD44-228ENST00000528455 OPRK1P41145 380 aa5.73□□□□□ -1.49
CD44-228ENST00000528455 PROK1P58294 105 aa5.73□□□□□ -1.49
CD44-228ENST00000528455 EIF5AP63241 154 aaKnown RBP5.73□□□□□ -1.49
CD44-228ENST00000528455 RHOGP84095 191 aa5.73□□□□□ -1.49
CD44-228ENST00000528455 RAB31Q13636 194 aa5.73□□□□□ -1.49
CD44-228ENST00000528455 ZNF266Q14584 549 aa5.73□□□□□ -1.49
CD44-228ENST00000528455 ZNF343Q6P1L6 599 aa5.73□□□□□ -1.49
CD44-228ENST00000528455 ZNF329Q86UD4 541 aa5.73□□□□□ -1.49
CD44-228ENST00000528455 HAPLN4Q86UW8 402 aa5.73□□□□□ -1.49
CD44-228ENST00000528455 C9orf62Q8N4C0 152 aa5.73□□□□□ -1.49
CD44-228ENST00000528455 UBAC2Q8NBM4 344 aa5.73□□□□□ -1.49
CD44-228ENST00000528455 MYOZ3Q8TDC0 251 aa5.73□□□□□ -1.49
CD44-228ENST00000528455 EEF1AKMT3Q96AZ1 226 aa5.73□□□□□ -1.49
CD44-228ENST00000528455 ATP5SQ99766 215 aa5.73□□□□□ -1.49
CD44-228ENST00000528455 ARPC5LQ9BPX5 153 aa5.73□□□□□ -1.49
CD44-228ENST00000528455 TMEM147Q9BVK8 224 aa5.73□□□□□ -1.49
CD44-228ENST00000528455 PARD6GQ9BYG4 376 aaPredicted RBP5.73□□□□□ -1.49
CD44-228ENST00000528455 ARL6Q9H0F7 186 aa5.73□□□□□ -1.49
CD44-228ENST00000528455 KLK15Q9H2R5 256 aa5.73□□□□□ -1.49
CD44-228ENST00000528455 UQCC1Q9NVA1 299 aa5.73□□□□□ -1.49
CD44-228ENST00000528455 BORCS7-ASMTA0A0B4J1R7 106 aa5.72□□□□□ -1.49
CD44-228ENST00000528455 KANTRA0A1W2PQU2 76 aa5.72□□□□□ -1.49
CD44-228ENST00000528455 B5MCH6 92 aa5.72□□□□□ -1.49
CD44-228ENST00000528455 CLN5O75503 358 aa5.72□□□□□ -1.49
CD44-228ENST00000528455 CFDP00746 253 aaPredicted RBP5.72□□□□□ -1.49
Retrieved 100 of 20,778 RNA–protein pairs in 56 ms