RNA–Protein interactions for RNA: ENST00000525348.1

CD44-217, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 568 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-217ENST00000525348 MBD3L1Q8WWY6 194 aa2.49□□□□□ -2.01
CD44-217ENST00000525348 SRSF12Q8WXF0 261 aaKnown RBP2.49□□□□□ -2.01
CD44-217ENST00000525348 NEURL3Q96EH8 262 aa2.49□□□□□ -2.01
CD44-217ENST00000525348 DYNLL2Q96FJ2 89 aa2.49□□□□□ -2.01
CD44-217ENST00000525348 ZC2HC1AQ96GY0 325 aa2.49□□□□□ -2.01
CD44-217ENST00000525348 AGMATQ9BSE5 352 aa2.49□□□□□ -2.01
CD44-217ENST00000525348 SNRNP25Q9BV90 132 aaKnown RBP2.49□□□□□ -2.01
CD44-217ENST00000525348 ZNF471Q9BX82 626 aaPredicted RBP2.49□□□□□ -2.01
CD44-217ENST00000525348 TMEM59Q9BXS4 323 aa2.49□□□□□ -2.01
CD44-217ENST00000525348 BANF2Q9H503 90 aa2.49□□□□□ -2.01
CD44-217ENST00000525348 TMEM9BQ9NQ34 198 aa2.49□□□□□ -2.01
CD44-217ENST00000525348 TMEM106BQ9NUM4 274 aa2.49□□□□□ -2.01
CD44-217ENST00000525348 KLF12Q9Y4X4 402 aa2.49□□□□□ -2.01
CD44-217ENST00000525348 DOCK1Q14185 1865 aa2.49□□□□□ -2.01
CD44-217ENST00000525348 TSC2P49815 1807 aa2.49□□□□□ -2.01
CD44-217ENST00000525348 SZT2Q5T011 3432 aa2.49□□□□□ -2.01
CD44-217ENST00000525348 COL6A3P12111 3177 aa2.48□□□□□ -2.01
CD44-217ENST00000525348 FANCMQ8IYD8 2048 aa2.48□□□□□ -2.01
CD44-217ENST00000525348 DAPL1A0PJW8 107 aa2.48□□□□□ -2.01
CD44-217ENST00000525348 MYBPHLA2RUH7 354 aa2.48□□□□□ -2.01
CD44-217ENST00000525348 C5orf63A6NC05 138 aa2.48□□□□□ -2.01
CD44-217ENST00000525348 RBFOX3A6NFN3 312 aa2.48□□□□□ -2.01
CD44-217ENST00000525348 GGT3PA6NGU5 568 aa2.48□□□□□ -2.01
CD44-217ENST00000525348 EEF1E1-BLOC1S5C9J1V9 151 aa2.48□□□□□ -2.01
CD44-217ENST00000525348 ZNF670-ZNF695F2Z2N8 137 aa2.48□□□□□ -2.01
CD44-217ENST00000525348 H3BTX0 84 aa2.48□□□□□ -2.01
CD44-217ENST00000525348 XKRYO14609 159 aa2.48□□□□□ -2.01
CD44-217ENST00000525348 EEF1E1O43324 174 aaKnown RBP2.48□□□□□ -2.01
CD44-217ENST00000525348 DHRS3O75911 302 aa2.48□□□□□ -2.01
CD44-217ENST00000525348 IL5P05113 134 aa2.48□□□□□ -2.01
CD44-217ENST00000525348 LGALS1P09382 135 aaKnown RBP2.48□□□□□ -2.01
CD44-217ENST00000525348 H2BFMP0C1H6 154 aa2.48□□□□□ -2.01
CD44-217ENST00000525348 ARL2P36404 184 aa2.48□□□□□ -2.01
CD44-217ENST00000525348 GUCA1AP43080 201 aaPredicted RBP2.48□□□□□ -2.01
CD44-217ENST00000525348 GALR1P47211 349 aa2.48□□□□□ -2.01
CD44-217ENST00000525348 UBE2E1P51965 193 aa2.48□□□□□ -2.01
CD44-217ENST00000525348 RBM11P57052 281 aaKnown RBP2.48□□□□□ -2.01
CD44-217ENST00000525348 SLC25A35Q3KQZ1 300 aa2.48□□□□□ -2.01
CD44-217ENST00000525348 SPATA45Q537H7 98 aa2.48□□□□□ -2.01
CD44-217ENST00000525348 SPANXN3Q5MJ09 141 aa2.48□□□□□ -2.01
CD44-217ENST00000525348 TNFAIP8L2Q6P589 184 aaPredicted RBP2.48□□□□□ -2.01
CD44-217ENST00000525348 TRIM40Q6P9F5 258 aa2.48□□□□□ -2.01
CD44-217ENST00000525348 TMEM14EPQ6UXP3 125 aa2.48□□□□□ -2.01
CD44-217ENST00000525348 STAC2Q6ZMT1 411 aa2.48□□□□□ -2.01
CD44-217ENST00000525348 TMEM179BQ7Z7N9 219 aa2.48□□□□□ -2.01
CD44-217ENST00000525348 SLC25A45Q8N413 288 aa2.48□□□□□ -2.01
CD44-217ENST00000525348 TPRX1Q8N7U7 411 aa2.48□□□□□ -2.01
CD44-217ENST00000525348 ZNF709Q8N972 641 aa2.48□□□□□ -2.01
CD44-217ENST00000525348 OR2M3Q8NG83 312 aa2.48□□□□□ -2.01
CD44-217ENST00000525348 OR4C16Q8NGL9 310 aa2.48□□□□□ -2.01
CD44-217ENST00000525348 UBE2E3Q969T4 207 aa2.48□□□□□ -2.01
CD44-217ENST00000525348 MS4A6EQ96DS6 147 aa2.48□□□□□ -2.01
CD44-217ENST00000525348 ADAT3Q96EY9 351 aaPredicted RBP2.48□□□□□ -2.01
CD44-217ENST00000525348 UBE2E2Q96LR5 201 aa2.48□□□□□ -2.01
CD44-217ENST00000525348 AMELYQ99218 206 aa2.48□□□□□ -2.01
CD44-217ENST00000525348 EHFQ9NZC4 300 aa2.48□□□□□ -2.01
CD44-217ENST00000525348 KCNIP1Q9NZI2 227 aa2.48□□□□□ -2.01
CD44-217ENST00000525348 MTFP1Q9UDX5 166 aa2.48□□□□□ -2.01
CD44-217ENST00000525348 FZR1Q9UM11 496 aa2.48□□□□□ -2.01
CD44-217ENST00000525348 SCML2Q9UQR0 700 aa2.48□□□□□ -2.01
CD44-217ENST00000525348 POLR1DQ9Y2S0 133 aa2.48□□□□□ -2.01
CD44-217ENST00000525348 MED31Q9Y3C7 131 aa2.48□□□□□ -2.01
CD44-217ENST00000525348 SOX21Q9Y651 276 aaPredicted RBP2.48□□□□□ -2.01
CD44-217ENST00000525348 SCN10AQ9Y5Y9 1956 aa2.48□□□□□ -2.01
CD44-217ENST00000525348 PIKFYVEQ9Y2I7 2098 aa2.48□□□□□ -2.01
CD44-217ENST00000525348 PLIN4Q96Q06 1357 aa2.48□□□□□ -2.01
CD44-217ENST00000525348 NLRC5Q86WI3 1866 aa2.48□□□□□ -2.01
CD44-217ENST00000525348 ARHGAP21Q5T5U3 1957 aa2.47□□□□□ -2.01
CD44-217ENST00000525348 VWA8A3KMH1 1905 aa2.47□□□□□ -2.01
CD44-217ENST00000525348 MUC21A0A0G2JKD1 596 aa2.47□□□□□ -2.01
CD44-217ENST00000525348 LOC107986453A0A1B0GWG9 222 aa2.47□□□□□ -2.01
CD44-217ENST00000525348 A6NDN8 102 aa2.47□□□□□ -2.01
CD44-217ENST00000525348 OR4C45A6NMZ5 311 aa2.47□□□□□ -2.01
CD44-217ENST00000525348 NCBP2LA6PVI3 153 aaKnown RBP2.47□□□□□ -2.01
CD44-217ENST00000525348 ZNF727A8MUV8 499 aa2.47□□□□□ -2.01
CD44-217ENST00000525348 SNRPGP15A8MWD9 76 aa2.47□□□□□ -2.01
CD44-217ENST00000525348 GGTLC3B5MD39 225 aa2.47□□□□□ -2.01
CD44-217ENST00000525348 H3BRM9 83 aa2.47□□□□□ -2.01
CD44-217ENST00000525348 J3QQQ9 107 aa2.47□□□□□ -2.01
CD44-217ENST00000525348 K7EMT4 169 aa2.47□□□□□ -2.01
CD44-217ENST00000525348 CRXO43186 299 aaPredicted RBP2.47□□□□□ -2.01
CD44-217ENST00000525348 TBL1XO60907 577 aa2.47□□□□□ -2.01
CD44-217ENST00000525348 CXorf1O96002 111 aa2.47□□□□□ -2.01
CD44-217ENST00000525348 CYB5AP00167 134 aa2.47□□□□□ -2.01
CD44-217ENST00000525348 HBE1P02100 147 aa2.47□□□□□ -2.01
CD44-217ENST00000525348 IGKV5-2P06315 115 aa2.47□□□□□ -2.01
CD44-217ENST00000525348 IL3P08700 152 aa2.47□□□□□ -2.01
CD44-217ENST00000525348 MRPL3P09001 348 aaKnown RBP2.47□□□□□ -2.01
CD44-217ENST00000525348 SEC11BP0C7V7 166 aa2.47□□□□□ -2.01
CD44-217ENST00000525348 SLC25A4P12235 298 aa2.47□□□□□ -2.01
CD44-217ENST00000525348 CRYBB3P26998 211 aa2.47□□□□□ -2.01
CD44-217ENST00000525348 ZNF93P35789 620 aaPredicted RBP2.47□□□□□ -2.01
CD44-217ENST00000525348 SRP14P37108 136 aaKnown RBP2.47□□□□□ -2.01
CD44-217ENST00000525348 VDAC2P45880 294 aaPredicted RBP2.47□□□□□ -2.01
CD44-217ENST00000525348 EMDP50402 254 aa2.47□□□□□ -2.01
CD44-217ENST00000525348 P2RX1P51575 399 aa2.47□□□□□ -2.01
CD44-217ENST00000525348 DLX1P56177 255 aa2.47□□□□□ -2.01
CD44-217ENST00000525348 HERVK_113P63121 156 aa2.47□□□□□ -2.01
CD44-217ENST00000525348 SLC25A11Q02978 314 aaKnown RBP2.47□□□□□ -2.01
CD44-217ENST00000525348 EGFEM1PQ0D2K5 195 aa2.47□□□□□ -2.01
Retrieved 100 of 20,778 RNA–protein pairs in 92.4 ms