RNA–Protein interactions for RNA: ENST00000522353.2

PCDHA3-201, Transcript of protocadherin alpha 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PCDHA3, Length 5,260 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHA3-201ENST00000522353 SOD3P08294 240 aa13.43□□□□□ -0.26
PCDHA3-201ENST00000522353 PLP1P60201 277 aa13.43□□□□□ -0.26
PCDHA3-201ENST00000522353 GLMPQ8WWB7 406 aa13.43□□□□□ -0.26
PCDHA3-201ENST00000522353 IGKV1-12A0A0C4DH73 117 aa13.42□□□□□ -0.26
PCDHA3-201ENST00000522353 IGKV1D-12P01611 117 aa13.42□□□□□ -0.26
PCDHA3-201ENST00000522353 TDGF1P13385 188 aa13.42□□□□□ -0.26
PCDHA3-201ENST00000522353 C15orf32Q32M92 178 aa13.42□□□□□ -0.26
PCDHA3-201ENST00000522353 TEX38Q6PEX7 206 aa13.42□□□□□ -0.26
PCDHA3-201ENST00000522353 BRD3OSQ6XYD6 125 aa13.42□□□□□ -0.26
PCDHA3-201ENST00000522353 SCGB3A1Q96QR1 104 aa13.42□□□□□ -0.26
PCDHA3-201ENST00000522353 USF3Q68DE3 2245 aa13.42□□□□□ -0.26
PCDHA3-201ENST00000522353 DPRXA6NFQ7 191 aa13.42□□□□□ -0.26
PCDHA3-201ENST00000522353 SLC17A3O00476 420 aa13.42□□□□□ -0.26
PCDHA3-201ENST00000522353 MPZP25189 248 aa13.42□□□□□ -0.26
PCDHA3-201ENST00000522353 F11RQ9Y624 299 aaKnown RBP13.42□□□□□ -0.26
PCDHA3-201ENST00000522353 PDCD11Q14690 1871 aaKnown RBP13.42□□□□□ -0.26
PCDHA3-201ENST00000522353 PRR32B1ATL7 298 aa13.42□□□□□ -0.26
PCDHA3-201ENST00000522353 TMEM190Q8WZ59 177 aa13.42□□□□□ -0.26
PCDHA3-201ENST00000522353 BPESC1Q9GZL8 116 aa13.42□□□□□ -0.26
PCDHA3-201ENST00000522353 TMEM160Q9NX00 188 aa13.42□□□□□ -0.26
PCDHA3-201ENST00000522353 ARL6IP6Q8N6S5 226 aa13.42□□□□□ -0.26
PCDHA3-201ENST00000522353 A0A087WWC5 75 aa13.41□□□□□ -0.26
PCDHA3-201ENST00000522353 LOC102724200A0A096LPH7 203 aaPredicted RBP13.41□□□□□ -0.26
PCDHA3-201ENST00000522353 CLPSP04118 112 aa13.41□□□□□ -0.26
PCDHA3-201ENST00000522353 B3GALT5-AS1P59052 145 aa13.41□□□□□ -0.26
PCDHA3-201ENST00000522353 C3orf36Q3SXR2 165 aa13.41□□□□□ -0.26
PCDHA3-201ENST00000522353 APOHP02749 345 aaPredicted RBP13.41□□□□□ -0.26
PCDHA3-201ENST00000522353 NBL1P41271 181 aa13.41□□□□□ -0.26
PCDHA3-201ENST00000522353 IGFL3Q6UXB1 125 aa13.41□□□□□ -0.26
PCDHA3-201ENST00000522353 J3QRE1 110 aa13.41□□□□□ -0.26
PCDHA3-201ENST00000522353 KLRD1Q13241 179 aa13.41□□□□□ -0.26
PCDHA3-201ENST00000522353 SIGLEC15Q6ZMC9 328 aa13.41□□□□□ -0.26
PCDHA3-201ENST00000522353 NR2C2APQ86WQ0 139 aa13.41□□□□□ -0.26
PCDHA3-201ENST00000522353 ORMDL3Q8N138 153 aa13.41□□□□□ -0.26
PCDHA3-201ENST00000522353 TOMM7Q9P0U1 55 aa13.41□□□□□ -0.26
PCDHA3-201ENST00000522353 A0A1W2PRE2 83 aa13.41□□□□□ -0.26
PCDHA3-201ENST00000522353 MLNRO43193 412 aa13.41□□□□□ -0.26
PCDHA3-201ENST00000522353 MBNL3Q9NUK0 354 aaKnown RBP13.41□□□□□ -0.26
PCDHA3-201ENST00000522353 SBF1O95248 1867 aa13.4□□□□□ -0.26
PCDHA3-201ENST00000522353 IZUMO1RA6ND01 250 aa13.4□□□□□ -0.26
PCDHA3-201ENST00000522353 LILRA1O75019 489 aa13.4□□□□□ -0.26
PCDHA3-201ENST00000522353 TCF23Q7RTU1 214 aa13.4□□□□□ -0.26
PCDHA3-201ENST00000522353 PSPNO60542 156 aa13.4□□□□□ -0.26
PCDHA3-201ENST00000522353 CCL20P78556 96 aa13.4□□□□□ -0.26
PCDHA3-201ENST00000522353 ID3Q02535 119 aa13.4□□□□□ -0.26
PCDHA3-201ENST00000522353 C5orf64Q2M2E5 130 aa13.4□□□□□ -0.26
PCDHA3-201ENST00000522353 DEFB121Q5J5C9 76 aa13.4□□□□□ -0.26
PCDHA3-201ENST00000522353 USMG5Q96IX5 58 aa13.4□□□□□ -0.26
PCDHA3-201ENST00000522353 A8MXK9 166 aa13.4□□□□□ -0.27
PCDHA3-201ENST00000522353 SLC25A48Q6ZT89 311 aaKnown RBP13.4□□□□□ -0.27
PCDHA3-201ENST00000522353 PLA2G2CQ5R387 149 aa13.39□□□□□ -0.27
PCDHA3-201ENST00000522353 TMEM42Q69YG0 159 aa13.39□□□□□ -0.27
PCDHA3-201ENST00000522353 CD177Q8N6Q3 437 aa13.39□□□□□ -0.27
PCDHA3-201ENST00000522353 C18orf15Q96N68 181 aa13.39□□□□□ -0.27
PCDHA3-201ENST00000522353 EPDR1Q9UM22 224 aa13.39□□□□□ -0.27
PCDHA3-201ENST00000522353 MUC21A0A0G2JKD1 596 aa13.39□□□□□ -0.27
PCDHA3-201ENST00000522353 MUC21A0A140T8X8 626 aa13.39□□□□□ -0.27
PCDHA3-201ENST00000522353 CRPP02741 224 aa13.39□□□□□ -0.27
PCDHA3-201ENST00000522353 HOXA5P20719 270 aa13.39□□□□□ -0.27
PCDHA3-201ENST00000522353 GCSAMLQ5JQS6 135 aa13.39□□□□□ -0.27
PCDHA3-201ENST00000522353 OR10J3Q5JRS4 329 aa13.39□□□□□ -0.27
PCDHA3-201ENST00000522353 NEUROG1Q92886 237 aa13.39□□□□□ -0.27
PCDHA3-201ENST00000522353 WNK2Q9Y3S1 2297 aa13.39□□□□□ -0.27
PCDHA3-201ENST00000522353 TRAV8-6A0A0B4J262 113 aa13.39□□□□□ -0.27
PCDHA3-201ENST00000522353 MALP21145 153 aa13.39□□□□□ -0.27
PCDHA3-201ENST00000522353 TTC9CQ8N5M4 171 aa13.39□□□□□ -0.27
PCDHA3-201ENST00000522353 ATOH7Q8N100 152 aa13.39□□□□□ -0.27
PCDHA3-201ENST00000522353 DMRT1Q9Y5R6 373 aa13.39□□□□□ -0.27
PCDHA3-201ENST00000522353 CD33P20138 364 aa13.38□□□□□ -0.27
PCDHA3-201ENST00000522353 RNF166Q96A37 237 aaPredicted RBP13.38□□□□□ -0.27
PCDHA3-201ENST00000522353 PSG8Q9UQ74 426 aa13.38□□□□□ -0.27
PCDHA3-201ENST00000522353 TMEM50AO95807 157 aa13.38□□□□□ -0.27
PCDHA3-201ENST00000522353 RNF126Q9BV68 326 aa13.38□□□□□ -0.27
PCDHA3-201ENST00000522353 ST20Q9HBF5 79 aa13.38□□□□□ -0.27
PCDHA3-201ENST00000522353 WDR83OSQ9Y284 106 aa13.38□□□□□ -0.27
PCDHA3-201ENST00000522353 DICER1Q9UPY3 1922 aaKnown RBP13.38□□□□□ -0.27
PCDHA3-201ENST00000522353 CACNG7P62955 275 aa13.38□□□□□ -0.27
PCDHA3-201ENST00000522353 Q5PR19 223 aa13.38□□□□□ -0.27
PCDHA3-201ENST00000522353 FBLN7Q53RD9 439 aa13.38□□□□□ -0.27
PCDHA3-201ENST00000522353 UBE2DNLQ8IWF7 75 aa13.38□□□□□ -0.27
PCDHA3-201ENST00000522353 VGLL1Q99990 258 aa13.38□□□□□ -0.27
PCDHA3-201ENST00000522353 PRTN3P24158 256 aa13.37□□□□□ -0.27
PCDHA3-201ENST00000522353 CNTFRP26992 372 aa13.37□□□□□ -0.27
PCDHA3-201ENST00000522353 PIP4P2Q8N4L2 257 aa13.37□□□□□ -0.27
PCDHA3-201ENST00000522353 GAFA1Q96PS6 74 aa13.37□□□□□ -0.27
PCDHA3-201ENST00000522353 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP13.37□□□□□ -0.27
PCDHA3-201ENST00000522353 TRBV7-1A0A0A6YYK4 115 aa13.37□□□□□ -0.27
PCDHA3-201ENST00000522353 A0A1B0GWJ7 208 aa13.37□□□□□ -0.27
PCDHA3-201ENST00000522353 E7EQL1 145 aa13.37□□□□□ -0.27
PCDHA3-201ENST00000522353 MSMBP08118 114 aa13.37□□□□□ -0.27
PCDHA3-201ENST00000522353 FREM3P0C091 2139 aa13.37□□□□□ -0.27
PCDHA3-201ENST00000522353 RNF223E7ERA6 249 aa13.37□□□□□ -0.27
PCDHA3-201ENST00000522353 COL8A2P25067 703 aa13.37□□□□□ -0.27
PCDHA3-201ENST00000522353 BTCP35070 178 aa13.37□□□□□ -0.27
PCDHA3-201ENST00000522353 IFI27P40305 119 aaPredicted RBP13.37□□□□□ -0.27
PCDHA3-201ENST00000522353 BUB1B-PAK6H3BSN5 160 aa13.37□□□□□ -0.27
PCDHA3-201ENST00000522353 SMIM13P0DJ93 91 aa13.37□□□□□ -0.27
PCDHA3-201ENST00000522353 C10orf55Q5SWW7 151 aa13.37□□□□□ -0.27
PCDHA3-201ENST00000522353 C1QTNF9BB2RNN3 333 aa13.36□□□□□ -0.27
PCDHA3-201ENST00000522353 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP13.36□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 95.3 ms