RNA–Protein interactions for RNA: ENST00000436724.5

PTPRF-207, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 1 (best)

Gene PTPRF, Length 2,168 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-207ENST00000436724 DEFB113Q30KQ7 82 aa16.74■□□□□ 0.27
PTPRF-207ENST00000436724 OR1P1Q8NH06 330 aa16.74■□□□□ 0.27
PTPRF-207ENST00000436724 SLC45A2Q9UMX9 530 aa16.74■□□□□ 0.27
PTPRF-207ENST00000436724 HOXA5P20719 270 aa16.74■□□□□ 0.27
PTPRF-207ENST00000436724 RND2P52198 227 aa16.74■□□□□ 0.27
PTPRF-207ENST00000436724 PVRIGQ6DKI7 326 aa16.74■□□□□ 0.27
PTPRF-207ENST00000436724 SLC25A33Q9BSK2 321 aa16.74■□□□□ 0.27
PTPRF-207ENST00000436724 A0A0U1RQK1 487 aa16.73■□□□□ 0.27
PTPRF-207ENST00000436724 RNF223E7ERA6 249 aa16.73■□□□□ 0.27
PTPRF-207ENST00000436724 Q8N9W7 124 aa16.73■□□□□ 0.27
PTPRF-207ENST00000436724 SEC14L6B5MCN3 397 aa16.72■□□□□ 0.27
PTPRF-207ENST00000436724 CTAG1AP78358 180 aa16.72■□□□□ 0.27
PTPRF-207ENST00000436724 ZNF562Q6V9R5 426 aa16.72■□□□□ 0.27
PTPRF-207ENST00000436724 PSMG3-AS1Q96PY0 264 aa16.72■□□□□ 0.27
PTPRF-207ENST00000436724 WNT10AQ9GZT5 417 aa16.72■□□□□ 0.27
PTPRF-207ENST00000436724 SEPSECSQ9HD40 501 aaKnown RBP16.72■□□□□ 0.27
PTPRF-207ENST00000436724 CSPG4Q6UVK1 2322 aa16.72■□□□□ 0.27
PTPRF-207ENST00000436724 A0A1W2PPV4 95 aa16.72■□□□□ 0.27
PTPRF-207ENST00000436724 CLDN34H7C241 214 aa16.72■□□□□ 0.27
PTPRF-207ENST00000436724 MEF2BQ02080 365 aaPredicted RBP16.72■□□□□ 0.27
PTPRF-207ENST00000436724 GATAD1Q8WUU5 269 aa16.72■□□□□ 0.27
PTPRF-207ENST00000436724 TCEAL7Q9BRU2 100 aa16.72■□□□□ 0.27
PTPRF-207ENST00000436724 KCNIP2Q9NS61 270 aa16.72■□□□□ 0.27
PTPRF-207ENST00000436724 SPATA31B1PQ5VZV4 182 aa16.71■□□□□ 0.27
PTPRF-207ENST00000436724 SSX3Q99909 188 aa16.71■□□□□ 0.27
PTPRF-207ENST00000436724 DOK5Q9P104 306 aa16.71■□□□□ 0.27
PTPRF-207ENST00000436724 IGKV1D-37A0A075B6S9 117 aa16.71■□□□□ 0.27
PTPRF-207ENST00000436724 SOX15O60248 233 aa16.71■□□□□ 0.27
PTPRF-207ENST00000436724 NDUFA6P56556 154 aa16.71■□□□□ 0.27
PTPRF-207ENST00000436724 ZNF90Q03938 601 aa16.71■□□□□ 0.27
PTPRF-207ENST00000436724 KLF17Q5JT82 389 aaPredicted RBP16.71■□□□□ 0.27
PTPRF-207ENST00000436724 Q5PR19 223 aa16.71■□□□□ 0.27
PTPRF-207ENST00000436724 ARPC1AQ92747 370 aa16.71■□□□□ 0.27
PTPRF-207ENST00000436724 BEX4Q9NWD9 120 aaPredicted RBP16.71■□□□□ 0.27
PTPRF-207ENST00000436724 IFITM10A6NMD0 228 aa16.7■□□□□ 0.26
PTPRF-207ENST00000436724 MT-CO2P00403 227 aa16.7■□□□□ 0.26
PTPRF-207ENST00000436724 TRGC2P03986 189 aa16.7■□□□□ 0.26
PTPRF-207ENST00000436724 ASPHD1Q5U4P2 390 aa16.7■□□□□ 0.26
PTPRF-207ENST00000436724 FAM210BQ96KR6 192 aa16.7■□□□□ 0.26
PTPRF-207ENST00000436724 ZNF469Q96JG9 3925 aaPredicted RBP16.7■□□□□ 0.26
PTPRF-207ENST00000436724 IGHV7-81A0A0B4J1V7 117 aa16.7■□□□□ 0.26
PTPRF-207ENST00000436724 SH2D7A6NKC9 451 aaPredicted RBP16.7■□□□□ 0.26
PTPRF-207ENST00000436724 CRYGCP07315 174 aa16.7■□□□□ 0.26
PTPRF-207ENST00000436724 PSMB3P49720 205 aa16.7■□□□□ 0.26
PTPRF-207ENST00000436724 TMEM219Q86XT9 240 aa16.7■□□□□ 0.26
PTPRF-207ENST00000436724 LINC01356Q8N9X3 169 aa16.7■□□□□ 0.26
PTPRF-207ENST00000436724 HSPB9Q9BQS6 159 aa16.7■□□□□ 0.26
PTPRF-207ENST00000436724 NIT2Q9NQR4 276 aa16.7■□□□□ 0.26
PTPRF-207ENST00000436724 NAT8Q9UHE5 227 aa16.7■□□□□ 0.26
PTPRF-207ENST00000436724 HIST1H2BKO60814 126 aa16.69■□□□□ 0.26
PTPRF-207ENST00000436724 HIST1H2BJP06899 126 aa16.69■□□□□ 0.26
PTPRF-207ENST00000436724 HIST1H2BOP23527 126 aa16.69■□□□□ 0.26
PTPRF-207ENST00000436724 HIST1H2BBP33778 126 aa16.69■□□□□ 0.26
PTPRF-207ENST00000436724 HIST1H2BDP58876 126 aa16.69■□□□□ 0.26
PTPRF-207ENST00000436724 HIST1H2BCP62807 126 aa16.69■□□□□ 0.26
PTPRF-207ENST00000436724 HIST2H2BEQ16778 126 aa16.69■□□□□ 0.26
PTPRF-207ENST00000436724 HIST2H2BFQ5QNW6 126 aaPredicted RBP16.69■□□□□ 0.26
PTPRF-207ENST00000436724 HIST1H2BHQ93079 126 aa16.69■□□□□ 0.26
PTPRF-207ENST00000436724 HIST1H2BNQ99877 126 aa16.69■□□□□ 0.26
PTPRF-207ENST00000436724 HIST1H2BMQ99879 126 aa16.69■□□□□ 0.26
PTPRF-207ENST00000436724 SMIM7Q9BQ49 75 aa16.69■□□□□ 0.26
PTPRF-207ENST00000436724 SRSF8Q9BRL6 282 aaKnown RBP16.69■□□□□ 0.26
PTPRF-207ENST00000436724 GCN1Q92616 2671 aaKnown RBP16.69■□□□□ 0.26
PTPRF-207ENST00000436724 TRAV20A0A0B4J274 112 aa16.68■□□□□ 0.26
PTPRF-207ENST00000436724 CDX1P47902 265 aaPredicted RBP16.68■□□□□ 0.26
PTPRF-207ENST00000436724 TMEM241Q24JQ0 296 aa16.68■□□□□ 0.26
PTPRF-207ENST00000436724 SPNS3Q6ZMD2 512 aa16.68■□□□□ 0.26
PTPRF-207ENST00000436724 CYP2G1PQ6ZSU1 146 aa16.68■□□□□ 0.26
PTPRF-207ENST00000436724 PIFOQ8TCI5 191 aa16.68■□□□□ 0.26
PTPRF-207ENST00000436724 GSX1Q9H4S2 264 aaPredicted RBP16.68■□□□□ 0.26
PTPRF-207ENST00000436724 C1RLQ9NZP8 487 aa16.68■□□□□ 0.26
PTPRF-207ENST00000436724 CTDSP1Q9GZU7 261 aa16.68■□□□□ 0.26
PTPRF-207ENST00000436724 TMEM250H0YL14 139 aa16.67■□□□□ 0.26
PTPRF-207ENST00000436724 CORTO00230 105 aa16.67■□□□□ 0.26
PTPRF-207ENST00000436724 TGFAP01135 160 aa16.67■□□□□ 0.26
PTPRF-207ENST00000436724 ARL14EPLP0DKL9 152 aa16.67■□□□□ 0.26
PTPRF-207ENST00000436724 EGR2P11161 476 aaPredicted RBP16.67■□□□□ 0.26
PTPRF-207ENST00000436724 FAM78BQ5VT40 261 aa16.67■□□□□ 0.26
PTPRF-207ENST00000436724 ETFRF1Q6IPR1 90 aa16.67■□□□□ 0.26
PTPRF-207ENST00000436724 RASL11BQ9BPW5 248 aa16.67■□□□□ 0.26
PTPRF-207ENST00000436724 CR1P17927 2039 aa16.67■□□□□ 0.26
PTPRF-207ENST00000436724 THAP8Q8NA92 274 aa16.67■□□□□ 0.26
PTPRF-207ENST00000436724 RPUSD4Q96CM3 377 aaKnown RBP16.67■□□□□ 0.26
PTPRF-207ENST00000436724 MANBALQ9NQG1 85 aa16.67■□□□□ 0.26
PTPRF-207ENST00000436724 GSN-AS1Q9NRJ2 163 aa16.67■□□□□ 0.26
PTPRF-207ENST00000436724 TCRBV4S1A1TA0A5B7 111 aa16.66■□□□□ 0.26
PTPRF-207ENST00000436724 I3L2K1 104 aa16.66■□□□□ 0.26
PTPRF-207ENST00000436724 STAG3L2P0CL84 134 aa16.66■□□□□ 0.26
PTPRF-207ENST00000436724 STAG3L3P0CL85 134 aa16.66■□□□□ 0.26
PTPRF-207ENST00000436724 RPL23P62829 140 aaKnown RBP16.66■□□□□ 0.26
PTPRF-207ENST00000436724 LOXL1Q08397 574 aaPredicted RBP16.66■□□□□ 0.26
PTPRF-207ENST00000436724 ADIRFQ15847 76 aa16.66■□□□□ 0.26
PTPRF-207ENST00000436724 MIR17HGQ75NE6 70 aa16.66■□□□□ 0.26
PTPRF-207ENST00000436724 LRRC75A-AS1Q8N1F1 130 aa16.66■□□□□ 0.26
PTPRF-207ENST00000436724 TMEM116Q8NCL8 245 aa16.66■□□□□ 0.26
PTPRF-207ENST00000436724 TMEM37Q8WXS4 190 aa16.66■□□□□ 0.26
PTPRF-207ENST00000436724 TRBV24-1A0A075B6N3 115 aa16.65■□□□□ 0.26
PTPRF-207ENST00000436724 PHOX2AO14813 284 aa16.65■□□□□ 0.26
PTPRF-207ENST00000436724 PAGE4O60829 102 aa16.65■□□□□ 0.26
PTPRF-207ENST00000436724 HLA-DRB1P01911 266 aa16.65■□□□□ 0.26
Retrieved 100 of 20,778 RNA–protein pairs in 60.4 ms