RNA–Protein interactions for RNA: ENST00000395898.3

VPS13C-204, Transcript of vacuolar protein sorting 13 homolog C, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene VPS13C, Length 11,012 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13C-204ENST00000395898 EPDR1Q9UM22 224 aa4.55□□□□□ -1.68
VPS13C-204ENST00000395898 SPTAN1Q13813 2472 aaKnown RBP4.55□□□□□ -1.68
VPS13C-204ENST00000395898 EFNB3Q15768 340 aa4.55□□□□□ -1.68
VPS13C-204ENST00000395898 MINOS1Q5TGZ0 78 aa4.55□□□□□ -1.68
VPS13C-204ENST00000395898 SPRR3Q9UBC9 169 aa4.55□□□□□ -1.68
VPS13C-204ENST00000395898 MINOS1-NBL1R4GNA1 71 aa4.55□□□□□ -1.68
VPS13C-204ENST00000395898 KIAA1671Q9BY89 1806 aa4.55□□□□□ -1.68
VPS13C-204ENST00000395898 TRBV7-9A0A0J9YWB2 115 aa4.54□□□□□ -1.68
VPS13C-204ENST00000395898 TMEM50AO95807 157 aa4.54□□□□□ -1.68
VPS13C-204ENST00000395898 WNT2P09544 360 aa4.54□□□□□ -1.68
VPS13C-204ENST00000395898 MIR17HGQ75NE6 70 aa4.54□□□□□ -1.68
VPS13C-204ENST00000395898 TBX6O95947 436 aaPredicted RBP4.54□□□□□ -1.68
VPS13C-204ENST00000395898 ATP5G3P48201 142 aa4.54□□□□□ -1.68
VPS13C-204ENST00000395898 RPL23P62829 140 aaKnown RBP4.54□□□□□ -1.68
VPS13C-204ENST00000395898 CHCHD1Q96BP2 118 aaKnown RBP4.54□□□□□ -1.68
VPS13C-204ENST00000395898 PLSCR4Q9NRQ2 329 aa4.54□□□□□ -1.68
VPS13C-204ENST00000395898 IGHV3-49A0A0A0MS15 119 aa4.54□□□□□ -1.68
VPS13C-204ENST00000395898 THBDP07204 575 aa4.54□□□□□ -1.68
VPS13C-204ENST00000395898 FAM201AQ5SY85 155 aa4.54□□□□□ -1.68
VPS13C-204ENST00000395898 SIGLEC15Q6ZMC9 328 aa4.54□□□□□ -1.68
VPS13C-204ENST00000395898 TRBV7-1A0A0A6YYK4 115 aa4.54□□□□□ -1.68
VPS13C-204ENST00000395898 FLVCR1-AS1Q8TAF5 88 aa4.54□□□□□ -1.68
VPS13C-204ENST00000395898 PKDREJQ9NTG1 2253 aa4.54□□□□□ -1.68
VPS13C-204ENST00000395898 NOTCH4Q99466 2003 aa4.54□□□□□ -1.68
VPS13C-204ENST00000395898 RNF222A6NCQ9 220 aa4.54□□□□□ -1.68
VPS13C-204ENST00000395898 CTAG1AP78358 180 aa4.54□□□□□ -1.68
VPS13C-204ENST00000395898 RHOGP84095 191 aa4.54□□□□□ -1.68
VPS13C-204ENST00000395898 RASL11AQ6T310 242 aa4.54□□□□□ -1.68
VPS13C-204ENST00000395898 TMEM105Q8N8V8 129 aa4.54□□□□□ -1.68
VPS13C-204ENST00000395898 RNASE7Q9H1E1 156 aaKnown RBP4.54□□□□□ -1.68
VPS13C-204ENST00000395898 BEX4Q9NWD9 120 aaPredicted RBP4.54□□□□□ -1.68
VPS13C-204ENST00000395898 IGHV3OR16-13A0A075B7E8 117 aa4.54□□□□□ -1.68
VPS13C-204ENST00000395898 IGHV3-74A0A0B4J1X5 117 aa4.54□□□□□ -1.68
VPS13C-204ENST00000395898 F8VVB4 439 aa4.54□□□□□ -1.68
VPS13C-204ENST00000395898 F8VWA3 439 aa4.54□□□□□ -1.68
VPS13C-204ENST00000395898 PLNP26678 52 aa4.54□□□□□ -1.68
VPS13C-204ENST00000395898 TMEM42Q69YG0 159 aa4.54□□□□□ -1.68
VPS13C-204ENST00000395898 VWCEQ96DN2 955 aa4.54□□□□□ -1.68
VPS13C-204ENST00000395898 NCOR1O75376 2440 aa4.54□□□□□ -1.68
VPS13C-204ENST00000395898 CYSLTR1Q9Y271 337 aa4.54□□□□□ -1.68
VPS13C-204ENST00000395898 OOSP1A8MZH6 123 aa4.54□□□□□ -1.68
VPS13C-204ENST00000395898 SRRM5B3KS81 715 aa4.54□□□□□ -1.68
VPS13C-204ENST00000395898 CFAP161Q6P656 301 aa4.54□□□□□ -1.68
VPS13C-204ENST00000395898 C20orf204Q6ZNR8 217 aa4.54□□□□□ -1.68
VPS13C-204ENST00000395898 NIT1Q86X76 327 aa4.54□□□□□ -1.68
VPS13C-204ENST00000395898 FOXC2Q99958 501 aa4.54□□□□□ -1.68
VPS13C-204ENST00000395898 ZNF688P0C7X2 276 aa4.54□□□□□ -1.68
VPS13C-204ENST00000395898 CCL3L1P16619 93 aa4.54□□□□□ -1.68
VPS13C-204ENST00000395898 RNF5Q99942 180 aa4.54□□□□□ -1.68
VPS13C-204ENST00000395898 VGLL1Q99990 258 aa4.54□□□□□ -1.68
VPS13C-204ENST00000395898 LINC00587B1AMM8 73 aa4.53□□□□□ -1.68
VPS13C-204ENST00000395898 NDUFA3O95167 84 aa4.53□□□□□ -1.68
VPS13C-204ENST00000395898 HBDP02042 147 aa4.53□□□□□ -1.68
VPS13C-204ENST00000395898 ZNF362Q5T0B9 420 aaPredicted RBP4.53□□□□□ -1.68
VPS13C-204ENST00000395898 NR2C2APQ86WQ0 139 aa4.53□□□□□ -1.68
VPS13C-204ENST00000395898 CRIPAKQ8N1N5 446 aa4.53□□□□□ -1.68
VPS13C-204ENST00000395898 C10orf126Q8N4M7 172 aa4.53□□□□□ -1.68
VPS13C-204ENST00000395898 KIR3DL3Q8N743 410 aa4.53□□□□□ -1.68
VPS13C-204ENST00000395898 C14orf144Q96I85 54 aa4.53□□□□□ -1.68
VPS13C-204ENST00000395898 DMRTA2Q96SC8 542 aa4.53□□□□□ -1.68
VPS13C-204ENST00000395898 PGPEP1Q9NXJ5 209 aa4.53□□□□□ -1.68
VPS13C-204ENST00000395898 TRGV11A0A075B6L2 103 aa4.53□□□□□ -1.68
VPS13C-204ENST00000395898 OVOL1O14753 267 aa4.53□□□□□ -1.68
VPS13C-204ENST00000395898 OR9G9P0C7N8 305 aa4.53□□□□□ -1.68
VPS13C-204ENST00000395898 SPSB3Q6PJ21 355 aa4.53□□□□□ -1.68
VPS13C-204ENST00000395898 SPACA3Q8IXA5 215 aa4.53□□□□□ -1.68
VPS13C-204ENST00000395898 PLPPR1Q8TBJ4 325 aa4.53□□□□□ -1.68
VPS13C-204ENST00000395898 LYZL4Q96KX0 146 aa4.53□□□□□ -1.68
VPS13C-204ENST00000395898 OR5AN1Q8NGI8 311 aa4.53□□□□□ -1.68
VPS13C-204ENST00000395898 TOMM7Q9P0U1 55 aa4.53□□□□□ -1.68
VPS13C-204ENST00000395898 S4R3C0 116 aa4.53□□□□□ -1.68
VPS13C-204ENST00000395898 DPM2O94777 84 aa4.53□□□□□ -1.68
VPS13C-204ENST00000395898 OBSL1O75147 1896 aa4.53□□□□□ -1.68
VPS13C-204ENST00000395898 THSD7BQ9C0I4 1608 aa4.53□□□□□ -1.68
VPS13C-204ENST00000395898 IGKV1-9A0A0C4DH69 117 aa4.53□□□□□ -1.68
VPS13C-204ENST00000395898 LILRA1O75019 489 aa4.53□□□□□ -1.68
VPS13C-204ENST00000395898 CD55P08174 381 aa4.53□□□□□ -1.68
VPS13C-204ENST00000395898 ID3Q02535 119 aa4.53□□□□□ -1.68
VPS13C-204ENST00000395898 YAE1D1Q9NRH1 226 aa4.53□□□□□ -1.68
VPS13C-204ENST00000395898 MBNL3Q9NUK0 354 aaKnown RBP4.53□□□□□ -1.68
VPS13C-204ENST00000395898 KIAA1549LQ6ZVL6 1849 aa4.53□□□□□ -1.68
VPS13C-204ENST00000395898 ABCA4P78363 2273 aa4.53□□□□□ -1.68
VPS13C-204ENST00000395898 HEPN1Q6WQI6 88 aa4.53□□□□□ -1.68
VPS13C-204ENST00000395898 NOTCH3Q9UM47 2321 aa4.53□□□□□ -1.68
VPS13C-204ENST00000395898 A0A1B0GV90 55 aa4.53□□□□□ -1.68
VPS13C-204ENST00000395898 APOMO95445 188 aa4.53□□□□□ -1.68
VPS13C-204ENST00000395898 FAM71F2Q6NXP2 309 aa4.53□□□□□ -1.68
VPS13C-204ENST00000395898 GGNQ86UU5 652 aa4.53□□□□□ -1.68
VPS13C-204ENST00000395898 PRDM13Q9H4Q3 707 aa4.53□□□□□ -1.68
VPS13C-204ENST00000395898 TMEM170AQ8WVE7 144 aa4.53□□□□□ -1.69
VPS13C-204ENST00000395898 IGHV2-26A0A0B4J1V2 119 aa4.52□□□□□ -1.69
VPS13C-204ENST00000395898 M0R1W7 72 aa4.52□□□□□ -1.69
VPS13C-204ENST00000395898 CDKN1AP38936 164 aa4.52□□□□□ -1.69
VPS13C-204ENST00000395898 TMEM86BQ8N661 226 aa4.52□□□□□ -1.69
VPS13C-204ENST00000395898 IGKV1D-13A0A0B4J2D9 117 aa4.52□□□□□ -1.69
VPS13C-204ENST00000395898 IGKV1-13P0DP09 117 aa4.52□□□□□ -1.69
VPS13C-204ENST00000395898 TRAV40A0A0B4J280 105 aa4.52□□□□□ -1.69
VPS13C-204ENST00000395898 A0A1B0GV72 72 aa4.52□□□□□ -1.69
VPS13C-204ENST00000395898 PAQR4Q8N4S7 273 aaPredicted RBP4.52□□□□□ -1.69
VPS13C-204ENST00000395898 SRSF8Q9BRL6 282 aaKnown RBP4.52□□□□□ -1.69
Retrieved 100 of 20,778 RNA–protein pairs in 172.9 ms