RNA–Protein interactions for RNA: ENST00000377861.4

PCDH9-201, Transcript of protocadherin 9, humanhuman

TSL 1 (best) BASIC

Gene PCDH9, Length 28,227 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PCDH9-201ENST00000377861 FAM104BQ5XKR9 115 aa4.04□□□□□ -1.76
PCDH9-201ENST00000377861 C11orf1Q9H5F2 150 aa4.04□□□□□ -1.76
PCDH9-201ENST00000377861 LAMTOR3Q9UHA4 124 aa4.04□□□□□ -1.76
PCDH9-201ENST00000377861 RGPD2P0DJD1 1756 aa4.04□□□□□ -1.76
PCDH9-201ENST00000377861 KIR2DL5BA0A0G2JN68 375 aa4.04□□□□□ -1.76
PCDH9-201ENST00000377861 KIR2DL5BA0A0G2JPC4 375 aa4.04□□□□□ -1.76
PCDH9-201ENST00000377861 KIR2DL5AQ8N109 375 aa4.04□□□□□ -1.76
PCDH9-201ENST00000377861 SPRY4Q9C004 299 aa4.04□□□□□ -1.76
PCDH9-201ENST00000377861 F12P00748 615 aaPredicted RBP4.04□□□□□ -1.76
PCDH9-201ENST00000377861 LTAP01374 205 aa4.04□□□□□ -1.76
PCDH9-201ENST00000377861 HLA-DMBP28068 263 aa4.04□□□□□ -1.76
PCDH9-201ENST00000377861 VGLL1Q99990 258 aa4.04□□□□□ -1.76
PCDH9-201ENST00000377861 A6NNC1 897 aa4.04□□□□□ -1.76
PCDH9-201ENST00000377861 A0A0A6YYD4 124 aa4.04□□□□□ -1.76
PCDH9-201ENST00000377861 K7EMT4 169 aa4.04□□□□□ -1.76
PCDH9-201ENST00000377861 EVI2AP22794 236 aa4.04□□□□□ -1.76
PCDH9-201ENST00000377861 IGHV3-9P01782 118 aa4.04□□□□□ -1.76
PCDH9-201ENST00000377861 DDB2Q92466 427 aa4.04□□□□□ -1.76
PCDH9-201ENST00000377861 TRBV19A0A075B6N1 114 aa4.04□□□□□ -1.76
PCDH9-201ENST00000377861 TMEM238C9JI98 176 aa4.04□□□□□ -1.76
PCDH9-201ENST00000377861 M0R3E3 92 aa4.04□□□□□ -1.76
PCDH9-201ENST00000377861 IGKV1-12A0A0C4DH73 117 aa4.04□□□□□ -1.76
PCDH9-201ENST00000377861 IGKV1D-12P01611 117 aa4.04□□□□□ -1.76
PCDH9-201ENST00000377861 RSPO3Q9BXY4 272 aaPredicted RBP4.04□□□□□ -1.76
PCDH9-201ENST00000377861 FAM90A27PA6NNH2 459 aa4.04□□□□□ -1.76
PCDH9-201ENST00000377861 CRYGCP07315 174 aa4.04□□□□□ -1.76
PCDH9-201ENST00000377861 TMEM178BH3BS89 294 aa4.04□□□□□ -1.76
PCDH9-201ENST00000377861 LYZL6O75951 148 aa4.04□□□□□ -1.76
PCDH9-201ENST00000377861 P0C879 139 aa4.04□□□□□ -1.76
PCDH9-201ENST00000377861 MYF5P13349 255 aa4.04□□□□□ -1.76
PCDH9-201ENST00000377861 NUP35Q8NFH5 326 aa4.04□□□□□ -1.76
PCDH9-201ENST00000377861 ARID1AO14497 2285 aa4.04□□□□□ -1.76
PCDH9-201ENST00000377861 NTF4P34130 210 aa4.04□□□□□ -1.76
PCDH9-201ENST00000377861 FAM53AQ6NSI3 398 aaPredicted RBP4.04□□□□□ -1.76
PCDH9-201ENST00000377861 C15orf62A8K5M9 175 aa4.04□□□□□ -1.76
PCDH9-201ENST00000377861 PRR32B1ATL7 298 aa4.04□□□□□ -1.76
PCDH9-201ENST00000377861 TM4SF20Q53R12 229 aa4.04□□□□□ -1.76
PCDH9-201ENST00000377861 ZNF83P51522 516 aa4.04□□□□□ -1.76
PCDH9-201ENST00000377861 IGKV1-27A0A075B6S5 117 aa4.04□□□□□ -1.76
PCDH9-201ENST00000377861 CECR9P0C854 216 aa4.04□□□□□ -1.76
PCDH9-201ENST00000377861 H0YJW9 148 aa4.04□□□□□ -1.76
PCDH9-201ENST00000377861 RNF125Q96EQ8 232 aa4.04□□□□□ -1.76
PCDH9-201ENST00000377861 TPPP3Q9BW30 176 aa4.04□□□□□ -1.76
PCDH9-201ENST00000377861 PSG8Q9UQ74 426 aa4.04□□□□□ -1.76
PCDH9-201ENST00000377861 TDGF1P3P51864 188 aa4.04□□□□□ -1.76
PCDH9-201ENST00000377861 IGKV1D-13A0A0B4J2D9 117 aa4.03□□□□□ -1.76
PCDH9-201ENST00000377861 INAFM2P0DMQ5 153 aa4.03□□□□□ -1.76
PCDH9-201ENST00000377861 IGKV1-13P0DP09 117 aa4.03□□□□□ -1.76
PCDH9-201ENST00000377861 NBR2O15453 112 aa4.03□□□□□ -1.76
PCDH9-201ENST00000377861 Q9H3A6 140 aa4.03□□□□□ -1.76
PCDH9-201ENST00000377861 TMEM200BQ69YZ2 307 aa4.03□□□□□ -1.76
PCDH9-201ENST00000377861 RPL15P61313 204 aaKnown RBP4.03□□□□□ -1.76
PCDH9-201ENST00000377861 M0R381 172 aa4.03□□□□□ -1.76
PCDH9-201ENST00000377861 OCIAD2Q56VL3 154 aa4.03□□□□□ -1.76
PCDH9-201ENST00000377861 ARRDC1-AS1Q9H2J1 176 aa4.03□□□□□ -1.76
PCDH9-201ENST00000377861 AURKAIP1Q9NWT8 199 aaPredicted RBP4.03□□□□□ -1.76
PCDH9-201ENST00000377861 CGB3P0DN86 165 aa4.03□□□□□ -1.76
PCDH9-201ENST00000377861 CGB7P0DN87 165 aa4.03□□□□□ -1.76
PCDH9-201ENST00000377861 GNB1P62873 340 aa4.03□□□□□ -1.76
PCDH9-201ENST00000377861 STPG1Q5TH74 334 aa4.03□□□□□ -1.76
PCDH9-201ENST00000377861 ATP6V0E2Q8NHE4 81 aa4.03□□□□□ -1.76
PCDH9-201ENST00000377861 C5orf64Q2M2E5 130 aa4.03□□□□□ -1.76
PCDH9-201ENST00000377861 PEMTQ9UBM1 199 aa4.03□□□□□ -1.76
PCDH9-201ENST00000377861 C9orf139Q6ZV77 190 aa4.03□□□□□ -1.76
PCDH9-201ENST00000377861 IGKCP01834 107 aa4.03□□□□□ -1.76
PCDH9-201ENST00000377861 BUB1B-PAK6H3BSN5 160 aa4.03□□□□□ -1.76
PCDH9-201ENST00000377861 HINT1P49773 126 aaPredicted RBP4.03□□□□□ -1.76
PCDH9-201ENST00000377861 CXorf67Q86X51 503 aaPredicted RBP4.03□□□□□ -1.76
PCDH9-201ENST00000377861 TAF1P21675 1872 aa4.03□□□□□ -1.76
PCDH9-201ENST00000377861 IGHV3-15A0A0B4J1V0 119 aa4.03□□□□□ -1.76
PCDH9-201ENST00000377861 CBLN1P23435 193 aa4.03□□□□□ -1.76
PCDH9-201ENST00000377861 C9orf118A6NHY6 69 aa4.03□□□□□ -1.76
PCDH9-201ENST00000377861 A8MWV9 139 aa4.03□□□□□ -1.76
PCDH9-201ENST00000377861 RNF182Q8N6D2 247 aa4.03□□□□□ -1.76
PCDH9-201ENST00000377861 RPL11P62913 178 aaKnown RBP4.03□□□□□ -1.76
PCDH9-201ENST00000377861 MESP2Q0VG99 397 aa4.03□□□□□ -1.76
PCDH9-201ENST00000377861 DEFB108BQ8NET1 73 aa4.03□□□□□ -1.76
PCDH9-201ENST00000377861 LGALS3P17931 250 aaKnown RBP4.03□□□□□ -1.76
PCDH9-201ENST00000377861 SCRT1Q9BWW7 348 aa4.03□□□□□ -1.76
PCDH9-201ENST00000377861 HES3Q5TGS1 186 aa4.03□□□□□ -1.76
PCDH9-201ENST00000377861 Q6ZS52 159 aa4.03□□□□□ -1.76
PCDH9-201ENST00000377861 PRO1933Q9H354 126 aa4.03□□□□□ -1.76
PCDH9-201ENST00000377861 GAGE2BQ13066 116 aa4.03□□□□□ -1.76
PCDH9-201ENST00000377861 GAGE2EQ4V326 116 aa4.03□□□□□ -1.76
PCDH9-201ENST00000377861 SIGLEC15Q6ZMC9 328 aa4.03□□□□□ -1.76
PCDH9-201ENST00000377861 GAGE2DQ9UEU5 116 aa4.03□□□□□ -1.76
PCDH9-201ENST00000377861 DEFB123Q8N688 67 aa4.03□□□□□ -1.76
PCDH9-201ENST00000377861 LY6G5BQ8NDX9 201 aa4.02□□□□□ -1.77
PCDH9-201ENST00000377861 ZNF747Q9BV97 191 aa4.02□□□□□ -1.77
PCDH9-201ENST00000377861 TMEM8BA6NDV4 472 aa4.02□□□□□ -1.77
PCDH9-201ENST00000377861 TM2D2Q9BX73 214 aa4.02□□□□□ -1.77
PCDH9-201ENST00000377861 V9GYV3 84 aa4.02□□□□□ -1.77
PCDH9-201ENST00000377861 H0YGX0 51 aa4.02□□□□□ -1.77
PCDH9-201ENST00000377861 CELA2BP08218 269 aaPredicted RBP4.02□□□□□ -1.77
PCDH9-201ENST00000377861 LYZP61626 148 aa4.02□□□□□ -1.77
PCDH9-201ENST00000377861 NPBQ8NG41 125 aa4.02□□□□□ -1.77
PCDH9-201ENST00000377861 JMJD8Q96S16 334 aa4.02□□□□□ -1.77
PCDH9-201ENST00000377861 SPCS1Q9Y6A9 102 aa4.02□□□□□ -1.77
PCDH9-201ENST00000377861 CEBPDP49716 269 aaPredicted RBP4.02□□□□□ -1.77
PCDH9-201ENST00000377861 HERV-K104P63124 156 aa4.02□□□□□ -1.77
Retrieved 100 of 20,778 RNA–protein pairs in 55.7 ms