RNA–Protein interactions for RNA: ENST00000269137.11

SS18-201, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene SS18, Length 1,836 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-201ENST00000269137 F8W036 122 aa11.07□□□□□ -0.64
SS18-201ENST00000269137 CCL20P78556 96 aa11.07□□□□□ -0.64
SS18-201ENST00000269137 FAM122CQ6P4D5 195 aa11.07□□□□□ -0.64
SS18-201ENST00000269137 LCN15Q6UWW0 184 aa11.07□□□□□ -0.64
SS18-201ENST00000269137 SPNS3Q6ZMD2 512 aa11.07□□□□□ -0.64
SS18-201ENST00000269137 RAB24Q969Q5 203 aa11.07□□□□□ -0.64
SS18-201ENST00000269137 C19orf24Q9BVV8 132 aa11.07□□□□□ -0.64
SS18-201ENST00000269137 SCRT1Q9BWW7 348 aa11.07□□□□□ -0.64
SS18-201ENST00000269137 SEC11CQ9BY50 192 aa11.07□□□□□ -0.64
SS18-201ENST00000269137 MAP1LC3BQ9GZQ8 125 aa11.07□□□□□ -0.64
SS18-201ENST00000269137 VPREB3Q9UKI3 123 aa11.07□□□□□ -0.64
SS18-201ENST00000269137 TRAV41A0A0B4J266 112 aa11.06□□□□□ -0.64
SS18-201ENST00000269137 G3V318 75 aa11.06□□□□□ -0.64
SS18-201ENST00000269137 DNASE2O00115 360 aaPredicted RBP11.06□□□□□ -0.64
SS18-201ENST00000269137 CLN5O75503 358 aa11.06□□□□□ -0.64
SS18-201ENST00000269137 CD5P06127 495 aa11.06□□□□□ -0.64
SS18-201ENST00000269137 CDC34P49427 236 aaPredicted RBP11.06□□□□□ -0.64
SS18-201ENST00000269137 BLCAPP62952 87 aa11.06□□□□□ -0.64
SS18-201ENST00000269137 PMS2P11Q13670 270 aa11.06□□□□□ -0.64
SS18-201ENST00000269137 C9orf152Q5JTZ5 239 aa11.06□□□□□ -0.64
SS18-201ENST00000269137 SLC35E3Q7Z769 313 aa11.06□□□□□ -0.64
SS18-201ENST00000269137 SVBPQ8N300 66 aa11.06□□□□□ -0.64
SS18-201ENST00000269137 SLC25A22Q9H936 323 aa11.06□□□□□ -0.64
SS18-201ENST00000269137 ZNF580Q9UK33 172 aa11.06□□□□□ -0.64
SS18-201ENST00000269137 TRBV9A0A0B4J1U6 114 aa11.05□□□□□ -0.64
SS18-201ENST00000269137 A0A1B0GV50 99 aa11.05□□□□□ -0.64
SS18-201ENST00000269137 LOC105371267A0A1B0GV96 52 aa11.05□□□□□ -0.64
SS18-201ENST00000269137 A0A1W2PPV4 95 aa11.05□□□□□ -0.64
SS18-201ENST00000269137 NDUFB8O95169 186 aa11.05□□□□□ -0.64
SS18-201ENST00000269137 IGLC1P0CG04 106 aa11.05□□□□□ -0.64
SS18-201ENST00000269137 GATA2P23769 480 aaPredicted RBP11.05□□□□□ -0.64
SS18-201ENST00000269137 NPBWR1P48145 328 aa11.05□□□□□ -0.64
SS18-201ENST00000269137 ZNF90Q03938 601 aa11.05□□□□□ -0.64
SS18-201ENST00000269137 VN1R17PQ8TDU5 208 aa11.05□□□□□ -0.64
SS18-201ENST00000269137 PBDC1Q9BVG4 233 aa11.05□□□□□ -0.64
SS18-201ENST00000269137 ANK3Q12955 4377 aaKnown RBP11.05□□□□□ -0.64
SS18-201ENST00000269137 TSPAN4O14817 238 aa11.05□□□□□ -0.64
SS18-201ENST00000269137 OR2J3O76001 311 aa11.05□□□□□ -0.64
SS18-201ENST00000269137 BRI3O95415 125 aa11.05□□□□□ -0.64
SS18-201ENST00000269137 FCGR2BP31994 310 aaPredicted RBP11.05□□□□□ -0.64
SS18-201ENST00000269137 MFAP4P55083 255 aa11.05□□□□□ -0.64
SS18-201ENST00000269137 RHOBP62745 196 aa11.05□□□□□ -0.64
SS18-201ENST00000269137 GUCA2BQ16661 112 aa11.05□□□□□ -0.64
SS18-201ENST00000269137 GUK1Q16774 197 aa11.05□□□□□ -0.64
SS18-201ENST00000269137 FBXL7Q9UJT9 491 aa11.05□□□□□ -0.64
SS18-201ENST00000269137 FLNBO75369 2602 aaKnown RBP11.04□□□□□ -0.64
SS18-201ENST00000269137 TRAV30A0A087WSZ9 112 aa11.04□□□□□ -0.64
SS18-201ENST00000269137 PSMB11A5LHX3 300 aa11.04□□□□□ -0.64
SS18-201ENST00000269137 AP4M1O00189 453 aa11.04□□□□□ -0.64
SS18-201ENST00000269137 SRP14P37108 136 aaKnown RBP11.04□□□□□ -0.64
SS18-201ENST00000269137 FGF8P55075 233 aaPredicted RBP11.04□□□□□ -0.64
SS18-201ENST00000269137 TMEM86BQ8N661 226 aa11.04□□□□□ -0.64
SS18-201ENST00000269137 NECAP1Q8NC96 275 aa11.04□□□□□ -0.64
SS18-201ENST00000269137 GATAD1Q8WUU5 269 aa11.04□□□□□ -0.64
SS18-201ENST00000269137 TXN2Q99757 166 aa11.04□□□□□ -0.64
SS18-201ENST00000269137 YAE1D1Q9NRH1 226 aa11.04□□□□□ -0.64
SS18-201ENST00000269137 OTOGQ6ZRI0 2925 aa11.03□□□□□ -0.64
SS18-201ENST00000269137 NUPL2O15504 423 aaKnown RBP11.03□□□□□ -0.64
SS18-201ENST00000269137 HOXA3O43365 443 aaPredicted RBP11.03□□□□□ -0.64
SS18-201ENST00000269137 IGKV1-17P01599 117 aa11.03□□□□□ -0.64
SS18-201ENST00000269137 OR5G3P0C626 314 aa11.03□□□□□ -0.64
SS18-201ENST00000269137 PEA15Q15121 130 aa11.03□□□□□ -0.64
SS18-201ENST00000269137 IL17RELQ6ZVW7 336 aa11.03□□□□□ -0.64
SS18-201ENST00000269137 SMDT1Q9H4I9 107 aa11.03□□□□□ -0.64
SS18-201ENST00000269137 DNAJC4Q9NNZ3 241 aa11.03□□□□□ -0.64
SS18-201ENST00000269137 TMEM160Q9NX00 188 aa11.03□□□□□ -0.64
SS18-201ENST00000269137 C21orf62Q9NYP8 219 aa11.03□□□□□ -0.64
SS18-201ENST00000269137 FAM74A7A6NL05 159 aa11.02□□□□□ -0.64
SS18-201ENST00000269137 H3BUA1 57 aa11.02□□□□□ -0.64
SS18-201ENST00000269137 FABP1P07148 127 aa11.02□□□□□ -0.64
SS18-201ENST00000269137 STAG3L2P0CL84 134 aa11.02□□□□□ -0.64
SS18-201ENST00000269137 STAG3L3P0CL85 134 aa11.02□□□□□ -0.64
SS18-201ENST00000269137 HNF1AP20823 631 aa11.02□□□□□ -0.64
SS18-201ENST00000269137 PLP1P60201 277 aa11.02□□□□□ -0.64
SS18-201ENST00000269137 RHOGP84095 191 aa11.02□□□□□ -0.64
SS18-201ENST00000269137 FAM74A3Q4VXF1 159 aa11.02□□□□□ -0.64
SS18-201ENST00000269137 Q6ZS46 218 aa11.02□□□□□ -0.64
SS18-201ENST00000269137 SIGLECL1Q8N7X8 197 aa11.02□□□□□ -0.64
SS18-201ENST00000269137 OR1L4Q8NGR5 311 aa11.02□□□□□ -0.64
SS18-201ENST00000269137 TMEM37Q8WXS4 190 aa11.02□□□□□ -0.64
SS18-201ENST00000269137 RNF2Q99496 336 aa11.02□□□□□ -0.64
SS18-201ENST00000269137 GSX1Q9H4S2 264 aaPredicted RBP11.02□□□□□ -0.64
SS18-201ENST00000269137 SEPSECSQ9HD40 501 aaKnown RBP11.02□□□□□ -0.64
SS18-201ENST00000269137 FUT9Q9Y231 359 aa11.02□□□□□ -0.64
SS18-201ENST00000269137 RBFOX3A6NFN3 312 aa11.02□□□□□ -0.65
SS18-201ENST00000269137 C9JQL5 133 aa11.02□□□□□ -0.65
SS18-201ENST00000269137 F8W735 103 aaPredicted RBP11.02□□□□□ -0.65
SS18-201ENST00000269137 HMGB3O15347 200 aaKnown RBP11.02□□□□□ -0.65
SS18-201ENST00000269137 EIF3GO75821 320 aaKnown RBP eCLIP11.02□□□□□ -0.65
SS18-201ENST00000269137 SNAPINO95295 136 aa11.02□□□□□ -0.65
SS18-201ENST00000269137 SFTA3P0C7M3 94 aa11.02□□□□□ -0.65
SS18-201ENST00000269137 PPIFP30405 207 aaKnown RBP11.02□□□□□ -0.65
SS18-201ENST00000269137 FAM78BQ5VT40 261 aa11.02□□□□□ -0.65
SS18-201ENST00000269137 PFDN5Q99471 154 aa11.02□□□□□ -0.65
SS18-201ENST00000269137 EIF5A2Q9GZV4 153 aaKnown RBP11.02□□□□□ -0.65
SS18-201ENST00000269137 ZNF355PQ9NSJ1 428 aa11.02□□□□□ -0.65
SS18-201ENST00000269137 ELOA3CA0A087WX78 387 aaPredicted RBP11.01□□□□□ -0.65
SS18-201ENST00000269137 GNG7O60262 68 aa11.01□□□□□ -0.65
SS18-201ENST00000269137 YPEL3P61236 119 aaPredicted RBP11.01□□□□□ -0.65
SS18-201ENST00000269137 C15orf32Q32M92 178 aa11.01□□□□□ -0.65
Retrieved 100 of 20,778 RNA–protein pairs in 68.4 ms