RNA–Protein interactions for RNA: ENST00000262803.9

UPF1-201, Transcript of UPF1, RNA helicase and ATPase, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene UPF1, Length 5,348 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-201ENST00000262803 PARD6GQ9BYG4 376 aaPredicted RBP15.88■□□□□ 0.13
UPF1-201ENST00000262803 GSN-AS1Q9NRJ2 163 aa15.88■□□□□ 0.13
UPF1-201ENST00000262803 INTS1Q8N201 2190 aaKnown RBP15.88■□□□□ 0.13
UPF1-201ENST00000262803 A0A1W2PRX2 142 aa15.88■□□□□ 0.13
UPF1-201ENST00000262803 SRRM5B3KS81 715 aa15.88■□□□□ 0.13
UPF1-201ENST00000262803 CTAG1AP78358 180 aa15.88■□□□□ 0.13
UPF1-201ENST00000262803 FGFBP3Q8TAT2 258 aa15.88■□□□□ 0.13
UPF1-201ENST00000262803 CRYGSP22914 178 aa15.88■□□□□ 0.13
UPF1-201ENST00000262803 RPUSD1Q9UJJ7 312 aaKnown RBP15.88■□□□□ 0.13
UPF1-201ENST00000262803 HTN3P15516 51 aa15.87■□□□□ 0.13
UPF1-201ENST00000262803 FAM169BQ8N8A8 192 aa15.87■□□□□ 0.13
UPF1-201ENST00000262803 SLC25A2Q9BXI2 301 aa15.87■□□□□ 0.13
UPF1-201ENST00000262803 TRAV8-6A0A0B4J262 113 aa15.87■□□□□ 0.13
UPF1-201ENST00000262803 IGKV1-12A0A0C4DH73 117 aa15.87■□□□□ 0.13
UPF1-201ENST00000262803 IGKV1D-12P01611 117 aa15.87■□□□□ 0.13
UPF1-201ENST00000262803 CD55P08174 381 aa15.87■□□□□ 0.13
UPF1-201ENST00000262803 FAM71F2Q6NXP2 309 aa15.87■□□□□ 0.13
UPF1-201ENST00000262803 DUTP33316 252 aaKnown RBP15.87■□□□□ 0.13
UPF1-201ENST00000262803 ZNF672Q499Z4 452 aaPredicted RBP15.87■□□□□ 0.13
UPF1-201ENST00000262803 LTBP1Q14766 1721 aa15.87■□□□□ 0.13
UPF1-201ENST00000262803 C17orf82Q86X59 251 aaPredicted RBP15.87■□□□□ 0.13
UPF1-201ENST00000262803 RAMP3O60896 148 aa15.87■□□□□ 0.13
UPF1-201ENST00000262803 SIGLEC15Q6ZMC9 328 aa15.87■□□□□ 0.13
UPF1-201ENST00000262803 ATP5L2Q7Z4Y8 100 aa15.87■□□□□ 0.13
UPF1-201ENST00000262803 C1QTNF4Q9BXJ3 329 aa15.87■□□□□ 0.13
UPF1-201ENST00000262803 HEPN1Q6WQI6 88 aa15.86■□□□□ 0.13
UPF1-201ENST00000262803 NDUFS8O00217 210 aa15.86■□□□□ 0.13
UPF1-201ENST00000262803 TIMM23O14925 209 aa15.86■□□□□ 0.13
UPF1-201ENST00000262803 USMG5Q96IX5 58 aa15.86■□□□□ 0.13
UPF1-201ENST00000262803 TSPAN13O95857 204 aa15.86■□□□□ 0.13
UPF1-201ENST00000262803 WFDC1Q9HC57 220 aa15.86■□□□□ 0.13
UPF1-201ENST00000262803 PSG8Q9UQ74 426 aa15.86■□□□□ 0.13
UPF1-201ENST00000262803 LHFPL1Q86WI0 220 aa15.85■□□□□ 0.13
UPF1-201ENST00000262803 TOMM7Q9P0U1 55 aa15.85■□□□□ 0.13
UPF1-201ENST00000262803 PINLYPA6NC86 204 aa15.85■□□□□ 0.13
UPF1-201ENST00000262803 ZNF324BQ6AW86 544 aaPredicted RBP15.85■□□□□ 0.13
UPF1-201ENST00000262803 RNF166Q96A37 237 aaPredicted RBP15.85■□□□□ 0.13
UPF1-201ENST00000262803 TRBV7-1A0A0A6YYK4 115 aa15.85■□□□□ 0.13
UPF1-201ENST00000262803 C10orf126Q8N4M7 172 aa15.85■□□□□ 0.13
UPF1-201ENST00000262803 TMEM86BQ8N661 226 aa15.85■□□□□ 0.13
UPF1-201ENST00000262803 RNF182Q8N6D2 247 aa15.85■□□□□ 0.13
UPF1-201ENST00000262803 KLHDC3Q9BQ90 382 aa15.85■□□□□ 0.13
UPF1-201ENST00000262803 TRAV40A0A0B4J280 105 aa15.85■□□□□ 0.13
UPF1-201ENST00000262803 ZNF815PA8K554 130 aa15.85■□□□□ 0.13
UPF1-201ENST00000262803 TFF1P04155 84 aa15.85■□□□□ 0.13
UPF1-201ENST00000262803 GATA3P23771 443 aa15.84■□□□□ 0.13
UPF1-201ENST00000262803 ARL6IP6Q8N6S5 226 aa15.84■□□□□ 0.13
UPF1-201ENST00000262803 SRSF8Q9BRL6 282 aaKnown RBP15.84■□□□□ 0.13
UPF1-201ENST00000262803 PGPEP1Q9NXJ5 209 aa15.84■□□□□ 0.13
UPF1-201ENST00000262803 SMPXQ9UHP9 88 aa15.84■□□□□ 0.13
UPF1-201ENST00000262803 RNF114Q9Y508 228 aa15.84■□□□□ 0.13
UPF1-201ENST00000262803 DMRTA2Q96SC8 542 aa15.84■□□□□ 0.13
UPF1-201ENST00000262803 TPTE2P1Q5T6R2 138 aa15.84■□□□□ 0.13
UPF1-201ENST00000262803 SSC4DQ8WTU2 575 aa15.84■□□□□ 0.13
UPF1-201ENST00000262803 BEX4Q9NWD9 120 aaPredicted RBP15.84■□□□□ 0.13
UPF1-201ENST00000262803 ROS1P08922 2347 aa15.84■□□□□ 0.13
UPF1-201ENST00000262803 IGHV2-26A0A0B4J1V2 119 aa15.84■□□□□ 0.13
UPF1-201ENST00000262803 LDLRAD4O15165 306 aa15.84■□□□□ 0.13
UPF1-201ENST00000262803 C9orf139Q6ZV77 190 aa15.84■□□□□ 0.13
UPF1-201ENST00000262803 C1QTNF9P0C862 333 aa15.83■□□□□ 0.13
UPF1-201ENST00000262803 C14orf144Q96I85 54 aa15.83■□□□□ 0.13
UPF1-201ENST00000262803 HBDP02042 147 aa15.83■□□□□ 0.12
UPF1-201ENST00000262803 NABP1Q96AH0 204 aa15.83■□□□□ 0.12
UPF1-201ENST00000262803 FAM223BA6NKX1 122 aa15.83■□□□□ 0.12
UPF1-201ENST00000262803 SUPT4H1P63272 117 aaKnown RBP15.83■□□□□ 0.12
UPF1-201ENST00000262803 FAM223AQ8IWN6 122 aa15.83■□□□□ 0.12
UPF1-201ENST00000262803 C18orf15Q96N68 181 aa15.83■□□□□ 0.12
UPF1-201ENST00000262803 WDR83OSQ9Y284 106 aa15.83■□□□□ 0.12
UPF1-201ENST00000262803 HIGD1CA8MV81 97 aa15.82■□□□□ 0.12
UPF1-201ENST00000262803 ERVK11-1P61568 191 aa15.82■□□□□ 0.12
UPF1-201ENST00000262803 MORN3Q6PF18 240 aaPredicted RBP15.82■□□□□ 0.12
UPF1-201ENST00000262803 ANK1P16157 1881 aa15.82■□□□□ 0.12
UPF1-201ENST00000262803 MBNL3Q9NUK0 354 aaKnown RBP15.82■□□□□ 0.12
UPF1-201ENST00000262803 RIF1Q5UIP0 2472 aaKnown RBP15.82■□□□□ 0.12
UPF1-201ENST00000262803 FOXG1P55316 489 aaPredicted RBP15.82■□□□□ 0.12
UPF1-201ENST00000262803 UNQ6494/PRO21346Q6UXR6 183 aa15.82■□□□□ 0.12
UPF1-201ENST00000262803 MBD3L4A6NDZ8 208 aaPredicted RBP15.82■□□□□ 0.12
UPF1-201ENST00000262803 MBD3L3A6NE82 208 aaPredicted RBP15.82■□□□□ 0.12
UPF1-201ENST00000262803 MBD3L5A6NJ08 208 aaPredicted RBP15.82■□□□□ 0.12
UPF1-201ENST00000262803 NAPSAO96009 420 aa15.82■□□□□ 0.12
UPF1-201ENST00000262803 SEC11AP67812 179 aa15.82■□□□□ 0.12
UPF1-201ENST00000262803 FAM19A2Q8N3H0 131 aa15.82■□□□□ 0.12
UPF1-201ENST00000262803 MBD3L2Q8NHZ7 208 aaPredicted RBP15.82■□□□□ 0.12
UPF1-201ENST00000262803 MUC21A0A0G2JKD1 596 aa15.81■□□□□ 0.12
UPF1-201ENST00000262803 MUC21A0A140T8X8 626 aa15.81■□□□□ 0.12
UPF1-201ENST00000262803 MUC21Q5SSG8 566 aa15.81■□□□□ 0.12
UPF1-201ENST00000262803 UBE2DNLQ8IWF7 75 aa15.81■□□□□ 0.12
UPF1-201ENST00000262803 CHCHD1Q96BP2 118 aaKnown RBP15.81■□□□□ 0.12
UPF1-201ENST00000262803 TMEM178BH3BS89 294 aa15.81■□□□□ 0.12
UPF1-201ENST00000262803 IGHV1-8P0DP01 117 aa15.81■□□□□ 0.12
UPF1-201ENST00000262803 RNASE7Q9H1E1 156 aaKnown RBP15.81■□□□□ 0.12
UPF1-201ENST00000262803 TP53BP1Q12888 1972 aaPredicted RBP15.81■□□□□ 0.12
UPF1-201ENST00000262803 IGHV3OR16-8A0A075B7F1 116 aa15.81■□□□□ 0.12
UPF1-201ENST00000262803 VMO1Q7Z5L0 202 aa15.81■□□□□ 0.12
UPF1-201ENST00000262803 TMEM170AQ8WVE7 144 aa15.81■□□□□ 0.12
UPF1-201ENST00000262803 SLC25A15Q9Y619 301 aa15.81■□□□□ 0.12
UPF1-201ENST00000262803 POLEQ07864 2286 aa15.81■□□□□ 0.12
UPF1-201ENST00000262803 PLNP26678 52 aa15.81■□□□□ 0.12
UPF1-201ENST00000262803 TMEM155Q4W5P6 130 aa15.81■□□□□ 0.12
UPF1-201ENST00000262803 GGNQ86UU5 652 aa15.8■□□□□ 0.12
Retrieved 100 of 20,778 RNA–protein pairs in 77.8 ms