RNA–Protein interactions for RNA: ENST00000543633.5

VPS33A-208, Transcript of VPS33A, CORVET/HOPS core subunit, humanhuman

TSL 5

Gene VPS33A, Length 2,019 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS33A-208ENST00000543633 MEF2CQ06413 473 aaPredicted RBP11.15□□□□□ -0.62
VPS33A-208ENST00000543633 FAM162BQ5T6X4 162 aa11.15□□□□□ -0.62
VPS33A-208ENST00000543633 MRPL54Q6P161 138 aaKnown RBP11.15□□□□□ -0.62
VPS33A-208ENST00000543633 VSTM2AQ8TAG5 236 aa11.15□□□□□ -0.62
VPS33A-208ENST00000543633 FAM103A1Q9BTL3 118 aaKnown RBP11.15□□□□□ -0.62
VPS33A-208ENST00000543633 GAL3ST2Q9H3Q3 398 aa11.15□□□□□ -0.62
VPS33A-208ENST00000543633 ZNF430Q9H8G1 570 aaPredicted RBP11.15□□□□□ -0.62
VPS33A-208ENST00000543633 PTPRZ1P23471 2315 aaPredicted RBP11.15□□□□□ -0.62
VPS33A-208ENST00000543633 NKX6-3A6NJ46 265 aa11.14□□□□□ -0.63
VPS33A-208ENST00000543633 SRRM4A7MD48 611 aaKnown RBP11.14□□□□□ -0.63
VPS33A-208ENST00000543633 PEX7O00628 323 aa11.14□□□□□ -0.63
VPS33A-208ENST00000543633 IGKV1-16P04430 117 aa11.14□□□□□ -0.63
VPS33A-208ENST00000543633 C3orf79P0CE67 100 aa11.14□□□□□ -0.63
VPS33A-208ENST00000543633 IGLC2P0DOY2 106 aa11.14□□□□□ -0.63
VPS33A-208ENST00000543633 IGLC3P0DOY3 106 aa11.14□□□□□ -0.63
VPS33A-208ENST00000543633 PMCHP20382 165 aa11.14□□□□□ -0.63
VPS33A-208ENST00000543633 TCL1AP56279 114 aa11.14□□□□□ -0.63
VPS33A-208ENST00000543633 TNFAIP6P98066 277 aaPredicted RBP11.14□□□□□ -0.63
VPS33A-208ENST00000543633 MOB3BQ86TA1 216 aa11.14□□□□□ -0.63
VPS33A-208ENST00000543633 THAP8Q8NA92 274 aa11.14□□□□□ -0.63
VPS33A-208ENST00000543633 TMEM167AQ8TBQ9 72 aa11.14□□□□□ -0.63
VPS33A-208ENST00000543633 C18orf32Q8TCD1 76 aa11.14□□□□□ -0.63
VPS33A-208ENST00000543633 TSKUQ8WUA8 353 aa11.14□□□□□ -0.63
VPS33A-208ENST00000543633 FAM122AQ96E09 287 aa11.14□□□□□ -0.63
VPS33A-208ENST00000543633 SAP30LQ9HAJ7 183 aa11.14□□□□□ -0.63
VPS33A-208ENST00000543633 ZFP30Q9Y2G7 519 aa11.14□□□□□ -0.63
VPS33A-208ENST00000543633 ZFHX4Q86UP3 3567 aa11.14□□□□□ -0.63
VPS33A-208ENST00000543633 COX7A2P2O60397 106 aa11.14□□□□□ -0.63
VPS33A-208ENST00000543633 RPL8P62917 257 aaKnown RBP11.14□□□□□ -0.63
VPS33A-208ENST00000543633 BORCS7Q96B45 105 aa11.14□□□□□ -0.63
VPS33A-208ENST00000543633 HARBI1Q96MB7 349 aa11.14□□□□□ -0.63
VPS33A-208ENST00000543633 SERTAD4Q9NUC0 356 aa11.14□□□□□ -0.63
VPS33A-208ENST00000543633 AMMECR1Q9Y4X0 333 aaPredicted RBP11.14□□□□□ -0.63
VPS33A-208ENST00000543633 HEATR1Q9H583 2144 aaKnown RBP11.14□□□□□ -0.63
VPS33A-208ENST00000543633 DPRXA6NFQ7 191 aa11.13□□□□□ -0.63
VPS33A-208ENST00000543633 IGHV1-46P01743 117 aa11.13□□□□□ -0.63
VPS33A-208ENST00000543633 GATA2P23769 480 aaPredicted RBP11.13□□□□□ -0.63
VPS33A-208ENST00000543633 SUB1P53999 127 aaKnown RBP eCLIP11.13□□□□□ -0.63
VPS33A-208ENST00000543633 KIAA1644Q3SXP7 199 aa11.13□□□□□ -0.63
VPS33A-208ENST00000543633 SEM1Q6ZVN7 128 aa11.13□□□□□ -0.63
VPS33A-208ENST00000543633 ZNF329Q86UD4 541 aa11.13□□□□□ -0.63
VPS33A-208ENST00000543633 STXBP6Q8NFX7 210 aa11.13□□□□□ -0.63
VPS33A-208ENST00000543633 OR5AN1Q8NGI8 311 aa11.13□□□□□ -0.63
VPS33A-208ENST00000543633 PAXXQ9BUH6 204 aa11.13□□□□□ -0.63
VPS33A-208ENST00000543633 TCRBV4S1A1TA0A5B7 111 aa11.13□□□□□ -0.63
VPS33A-208ENST00000543633 H0YJW9 148 aa11.13□□□□□ -0.63
VPS33A-208ENST00000543633 HYPMO75409 117 aa11.13□□□□□ -0.63
VPS33A-208ENST00000543633 HIST1H1EP10412 219 aaKnown RBP11.13□□□□□ -0.63
VPS33A-208ENST00000543633 RELQ04864 619 aaPredicted RBP11.13□□□□□ -0.63
VPS33A-208ENST00000543633 SRSF6Q13247 344 aaKnown RBP11.13□□□□□ -0.63
VPS33A-208ENST00000543633 TBR1Q16650 682 aa11.13□□□□□ -0.63
VPS33A-208ENST00000543633 C10orf113Q5VZT2 155 aa11.13□□□□□ -0.63
VPS33A-208ENST00000543633 PDPNQ86YL7 162 aa11.13□□□□□ -0.63
VPS33A-208ENST00000543633 C8orf31Q8N9H6 132 aa11.13□□□□□ -0.63
VPS33A-208ENST00000543633 SOX21Q9Y651 276 aaPredicted RBP11.13□□□□□ -0.63
VPS33A-208ENST00000543633 AKAP13Q12802 2813 aa11.13□□□□□ -0.63
VPS33A-208ENST00000543633 INTS1Q8N201 2190 aaKnown RBP11.12□□□□□ -0.63
VPS33A-208ENST00000543633 FRYQ5TBA9 3013 aa11.12□□□□□ -0.63
VPS33A-208ENST00000543633 A6NNC1 897 aa11.12□□□□□ -0.63
VPS33A-208ENST00000543633 NKX2-8O15522 239 aa11.12□□□□□ -0.63
VPS33A-208ENST00000543633 SPINK4O60575 86 aa11.12□□□□□ -0.63
VPS33A-208ENST00000543633 WT1P19544 449 aaPredicted RBP11.12□□□□□ -0.63
VPS33A-208ENST00000543633 CA7P43166 264 aa11.12□□□□□ -0.63
VPS33A-208ENST00000543633 SLAQ13239 276 aa11.12□□□□□ -0.63
VPS33A-208ENST00000543633 FAM201AQ5SY85 155 aa11.12□□□□□ -0.63
VPS33A-208ENST00000543633 DUX4L9Q6RFH8 374 aaPredicted RBP11.12□□□□□ -0.63
VPS33A-208ENST00000543633 TMEM190Q8WZ59 177 aa11.12□□□□□ -0.63
VPS33A-208ENST00000543633 MRPL20Q9BYC9 149 aaKnown RBP11.12□□□□□ -0.63
VPS33A-208ENST00000543633 ZNF355PQ9NSJ1 428 aa11.12□□□□□ -0.63
VPS33A-208ENST00000543633 MYCNOSP40205 109 aa11.11□□□□□ -0.63
VPS33A-208ENST00000543633 HNRNPA3P51991 378 aaKnown RBP11.11□□□□□ -0.63
VPS33A-208ENST00000543633 CT83Q5H943 113 aa11.11□□□□□ -0.63
VPS33A-208ENST00000543633 CYB5R2Q6BCY4 276 aa11.11□□□□□ -0.63
VPS33A-208ENST00000543633 FAM216BQ8N7L0 139 aa11.11□□□□□ -0.63
VPS33A-208ENST00000543633 ZNF596Q8TC21 504 aa11.11□□□□□ -0.63
VPS33A-208ENST00000543633 CCL13Q99616 98 aa11.11□□□□□ -0.63
VPS33A-208ENST00000543633 C7orf69Q9H7B7 122 aa11.11□□□□□ -0.63
VPS33A-208ENST00000543633 MRPS16Q9Y3D3 137 aaKnown RBP11.11□□□□□ -0.63
VPS33A-208ENST00000543633 CEACAM4O75871 244 aa11.11□□□□□ -0.63
VPS33A-208ENST00000543633 NPSP0C0P6 89 aa11.11□□□□□ -0.63
VPS33A-208ENST00000543633 COL8A2P25067 703 aa11.11□□□□□ -0.63
VPS33A-208ENST00000543633 SLC35B1P78383 322 aa11.11□□□□□ -0.63
VPS33A-208ENST00000543633 ZNF474Q6S9Z5 364 aaPredicted RBP11.11□□□□□ -0.63
VPS33A-208ENST00000543633 SPACA3Q8IXA5 215 aa11.11□□□□□ -0.63
VPS33A-208ENST00000543633 LINC00311Q8N616 119 aa11.11□□□□□ -0.63
VPS33A-208ENST00000543633 OR10W1Q8NGF6 305 aa11.11□□□□□ -0.63
VPS33A-208ENST00000543633 OR4C13Q8NGP0 309 aa11.11□□□□□ -0.63
VPS33A-208ENST00000543633 TXN2Q99757 166 aa11.11□□□□□ -0.63
VPS33A-208ENST00000543633 PRR14LQ5THK1 2151 aa11.11□□□□□ -0.63
VPS33A-208ENST00000543633 A0A1B0GXF2 115 aa11.1□□□□□ -0.63
VPS33A-208ENST00000543633 FSTL3O95633 263 aa11.1□□□□□ -0.63
VPS33A-208ENST00000543633 MFAP2P55001 183 aa11.1□□□□□ -0.63
VPS33A-208ENST00000543633 MORN5Q5VZ52 161 aa11.1□□□□□ -0.63
VPS33A-208ENST00000543633 DMRTA1Q5VZB9 504 aa11.1□□□□□ -0.63
VPS33A-208ENST00000543633 NUP37Q8NFH4 326 aa11.1□□□□□ -0.63
VPS33A-208ENST00000543633 NUP35Q8NFH5 326 aa11.1□□□□□ -0.63
VPS33A-208ENST00000543633 NUDT10Q8NFP7 164 aa11.1□□□□□ -0.63
VPS33A-208ENST00000543633 FLYWCH2Q96CP2 140 aaKnown RBP11.1□□□□□ -0.63
VPS33A-208ENST00000543633 FXYD5Q96DB9 178 aa11.1□□□□□ -0.63
VPS33A-208ENST00000543633 SNRNP40Q96DI7 357 aaKnown RBP11.1□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 124 ms