RNA–Protein interactions for RNA: ENST00000527733.5

USP47-207, Transcript of ubiquitin specific peptidase 47, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene USP47, Length 4,525 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP47-207ENST00000527733 MSMBP08118 114 aa12.32□□□□□ -0.44
USP47-207ENST00000527733 SOD3P08294 240 aa12.32□□□□□ -0.44
USP47-207ENST00000527733 C2orf83Q53S99 150 aa12.32□□□□□ -0.44
USP47-207ENST00000527733 IBA57Q5T440 356 aaKnown RBP12.32□□□□□ -0.44
USP47-207ENST00000527733 CYB5R2Q6BCY4 276 aa12.32□□□□□ -0.44
USP47-207ENST00000527733 BEND2Q8NDZ0 799 aa12.32□□□□□ -0.44
USP47-207ENST00000527733 PRSS3P2Q8NHM4 247 aa12.32□□□□□ -0.44
USP47-207ENST00000527733 KAAG1Q9UBP8 84 aa12.32□□□□□ -0.44
USP47-207ENST00000527733 ATRXP46100 2492 aa12.32□□□□□ -0.44
USP47-207ENST00000527733 PARLQ9H300 379 aa12.32□□□□□ -0.44
USP47-207ENST00000527733 CGB1A6NKQ9 187 aa12.31□□□□□ -0.44
USP47-207ENST00000527733 RNF212Q495C1 297 aa12.31□□□□□ -0.44
USP47-207ENST00000527733 ELOVL1Q9BW60 279 aa12.31□□□□□ -0.44
USP47-207ENST00000527733 ZNF585BQ52M93 769 aa12.31□□□□□ -0.44
USP47-207ENST00000527733 PVRIGQ6DKI7 326 aa12.31□□□□□ -0.44
USP47-207ENST00000527733 TMEM219Q86XT9 240 aa12.31□□□□□ -0.44
USP47-207ENST00000527733 C11orf53Q8IXP5 236 aa12.31□□□□□ -0.44
USP47-207ENST00000527733 SIGLEC9Q9Y336 463 aa12.31□□□□□ -0.44
USP47-207ENST00000527733 ZNF207O43670 478 aaKnown RBP12.31□□□□□ -0.44
USP47-207ENST00000527733 GATA3P23771 443 aa12.31□□□□□ -0.44
USP47-207ENST00000527733 SAA4P35542 130 aa12.31□□□□□ -0.44
USP47-207ENST00000527733 OR2T8A6NH00 312 aa12.3□□□□□ -0.44
USP47-207ENST00000527733 AMY1AP04745 511 aa12.3□□□□□ -0.44
USP47-207ENST00000527733 GOLT1AQ6ZVE7 132 aa12.3□□□□□ -0.44
USP47-207ENST00000527733 PTPN13Q12923 2485 aa12.3□□□□□ -0.44
USP47-207ENST00000527733 HTTP42858 3142 aa12.3□□□□□ -0.44
USP47-207ENST00000527733 TCRBV4S1A1TA0A5B7 111 aa12.3□□□□□ -0.44
USP47-207ENST00000527733 IGKV1-16P04430 117 aa12.3□□□□□ -0.44
USP47-207ENST00000527733 VDAC2P45880 294 aaPredicted RBP12.3□□□□□ -0.44
USP47-207ENST00000527733 C17orf58Q2M2W7 97 aa12.3□□□□□ -0.44
USP47-207ENST00000527733 IGHV3OR16-8A0A075B7F1 116 aa12.3□□□□□ -0.44
USP47-207ENST00000527733 TMEM189A5PLL7 270 aa12.3□□□□□ -0.44
USP47-207ENST00000527733 RNF223E7ERA6 249 aa12.3□□□□□ -0.44
USP47-207ENST00000527733 ISLRO14498 428 aa12.3□□□□□ -0.44
USP47-207ENST00000527733 MFAP2P55001 183 aa12.3□□□□□ -0.44
USP47-207ENST00000527733 ICAM4Q14773 271 aa12.3□□□□□ -0.44
USP47-207ENST00000527733 HIST1H2BAQ96A08 127 aa12.3□□□□□ -0.44
USP47-207ENST00000527733 PRB1P04280 392 aa12.3□□□□□ -0.44
USP47-207ENST00000527733 CRISP2P16562 243 aa12.3□□□□□ -0.44
USP47-207ENST00000527733 UBE2E1P51965 193 aa12.3□□□□□ -0.44
USP47-207ENST00000527733 TMEM14EPQ6UXP3 125 aa12.3□□□□□ -0.44
USP47-207ENST00000527733 ZNF600Q6ZNG1 722 aa12.3□□□□□ -0.44
USP47-207ENST00000527733 MIR17HGQ75NE6 70 aa12.3□□□□□ -0.44
USP47-207ENST00000527733 OR4B1Q8NGF8 309 aa12.3□□□□□ -0.44
USP47-207ENST00000527733 PCNX3Q9H6A9 2034 aa12.29□□□□□ -0.44
USP47-207ENST00000527733 TRAV41A0A0B4J266 112 aa12.29□□□□□ -0.44
USP47-207ENST00000527733 ANKHD1-EIF4EBP3H7C0V5 636 aaPredicted RBP12.29□□□□□ -0.44
USP47-207ENST00000527733 PF4P02776 101 aa12.29□□□□□ -0.44
USP47-207ENST00000527733 PMCHP20382 165 aa12.29□□□□□ -0.44
USP47-207ENST00000527733 RNASEKQ6P5S7 137 aaKnown RBP12.29□□□□□ -0.44
USP47-207ENST00000527733 WFDC1Q9HC57 220 aa12.29□□□□□ -0.44
USP47-207ENST00000527733 A0A0G2JRQ6 117 aa12.29□□□□□ -0.44
USP47-207ENST00000527733 IER3P46695 156 aa12.29□□□□□ -0.44
USP47-207ENST00000527733 SNRPD3P62318 126 aaKnown RBP12.29□□□□□ -0.44
USP47-207ENST00000527733 SRSF4Q08170 494 aaKnown RBP12.29□□□□□ -0.44
USP47-207ENST00000527733 Q5PR19 223 aa12.29□□□□□ -0.44
USP47-207ENST00000527733 Q6ZRM9 215 aa12.29□□□□□ -0.44
USP47-207ENST00000527733 FGF23Q9GZV9 251 aaPredicted RBP12.29□□□□□ -0.44
USP47-207ENST00000527733 WIPF3A6NGB9 483 aa12.29□□□□□ -0.44
USP47-207ENST00000527733 FABP4P15090 132 aa12.29□□□□□ -0.44
USP47-207ENST00000527733 CCKARP32238 428 aa12.29□□□□□ -0.44
USP47-207ENST00000527733 RNF125Q96EQ8 232 aa12.29□□□□□ -0.44
USP47-207ENST00000527733 ZNRD1Q9P1U0 126 aa12.29□□□□□ -0.44
USP47-207ENST00000527733 LINC00527Q9UJ94 153 aa12.29□□□□□ -0.44
USP47-207ENST00000527733 LAMA2P24043 3122 aaKnown RBP12.29□□□□□ -0.44
USP47-207ENST00000527733 SNURFLB1AK76 121 aa12.29□□□□□ -0.44
USP47-207ENST00000527733 ZNF253O75346 499 aa12.29□□□□□ -0.44
USP47-207ENST00000527733 CX3CL1P78423 397 aa12.29□□□□□ -0.44
USP47-207ENST00000527733 BATFQ16520 125 aa12.29□□□□□ -0.44
USP47-207ENST00000527733 MARVELD3Q96A59 401 aa12.29□□□□□ -0.44
USP47-207ENST00000527733 SGK494Q96LW2 274 aa12.29□□□□□ -0.44
USP47-207ENST00000527733 LIME1Q9H400 295 aa12.29□□□□□ -0.44
USP47-207ENST00000527733 NOTCH3Q9UM47 2321 aa12.28□□□□□ -0.44
USP47-207ENST00000527733 SPANXN1Q5VSR9 72 aa12.28□□□□□ -0.44
USP47-207ENST00000527733 TREML4Q6UXN2 200 aa12.28□□□□□ -0.44
USP47-207ENST00000527733 NIT2Q9NQR4 276 aa12.28□□□□□ -0.44
USP47-207ENST00000527733 C15orf65H3BRN8 121 aa12.28□□□□□ -0.44
USP47-207ENST00000527733 ANOS1P23352 680 aa12.28□□□□□ -0.44
USP47-207ENST00000527733 FBXL19-AS1Q494R0 122 aa12.28□□□□□ -0.44
USP47-207ENST00000527733 FAM209BQ5JX69 171 aa12.28□□□□□ -0.44
USP47-207ENST00000527733 PRR14LQ5THK1 2151 aa12.28□□□□□ -0.44
USP47-207ENST00000527733 CSPG4Q6UVK1 2322 aa12.28□□□□□ -0.44
USP47-207ENST00000527733 IGHV2-70DA0A0C4DH43 119 aa12.27□□□□□ -0.44
USP47-207ENST00000527733 KRTDAPP60985 99 aa12.27□□□□□ -0.44
USP47-207ENST00000527733 IGHV3-66A0A0C4DH42 116 aa12.27□□□□□ -0.45
USP47-207ENST00000527733 LINC00311Q8N616 119 aa12.27□□□□□ -0.45
USP47-207ENST00000527733 ITLN2Q8WWU7 325 aaPredicted RBP12.27□□□□□ -0.45
USP47-207ENST00000527733 PRORYQ9H606 182 aa12.27□□□□□ -0.45
USP47-207ENST00000527733 SAPCD1Q5SSQ6 148 aa12.27□□□□□ -0.45
USP47-207ENST00000527733 LYPD6Q86Y78 171 aa12.27□□□□□ -0.45
USP47-207ENST00000527733 NHLRC2Q8NBF2 726 aa12.27□□□□□ -0.45
USP47-207ENST00000527733 FOXI3A8MTJ6 420 aaPredicted RBP12.26□□□□□ -0.45
USP47-207ENST00000527733 HLA-DRB1P01911 266 aa12.26□□□□□ -0.45
USP47-207ENST00000527733 SNRPEP62304 92 aaKnown RBP12.26□□□□□ -0.45
USP47-207ENST00000527733 DUX5Q96PT3 197 aa12.26□□□□□ -0.45
USP47-207ENST00000527733 NDUFS7O75251 213 aa12.26□□□□□ -0.45
USP47-207ENST00000527733 VENTXO95231 258 aa12.26□□□□□ -0.45
USP47-207ENST00000527733 MYOD1P15172 320 aa12.26□□□□□ -0.45
USP47-207ENST00000527733 FAM53AQ6NSI3 398 aaPredicted RBP12.26□□□□□ -0.45
USP47-207ENST00000527733 LRP4O75096 1905 aa12.26□□□□□ -0.45
Retrieved 100 of 20,778 RNA–protein pairs in 73.3 ms