RNA–Protein interactions for RNA: ENST00000469003.5

CCDC28B-204, Transcript of coiled-coil domain containing 28B, humanhuman

TSL 2

Gene CCDC28B, Length 1,235 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28B-204ENST00000469003 MIXL1Q9H2W2 232 aa12.2□□□□□ -0.46
CCDC28B-204ENST00000469003 ENY2Q9NPA8 101 aa12.2□□□□□ -0.46
CCDC28B-204ENST00000469003 MPTX1A8MV57 137 aa12.19□□□□□ -0.46
CCDC28B-204ENST00000469003 APOHP02749 345 aaPredicted RBP12.19□□□□□ -0.46
CCDC28B-204ENST00000469003 MRPS10P82664 201 aaKnown RBP12.19□□□□□ -0.46
CCDC28B-204ENST00000469003 LILRB2Q8N423 598 aa12.19□□□□□ -0.46
CCDC28B-204ENST00000469003 GATAD1Q8WUU5 269 aa12.19□□□□□ -0.46
CCDC28B-204ENST00000469003 TRAV2A0A0B4J234 112 aa12.18□□□□□ -0.46
CCDC28B-204ENST00000469003 A0A1B0GU03 582 aa12.18□□□□□ -0.46
CCDC28B-204ENST00000469003 DNASE2O00115 360 aaPredicted RBP12.18□□□□□ -0.46
CCDC28B-204ENST00000469003 RGS5O15539 181 aa12.18□□□□□ -0.46
CCDC28B-204ENST00000469003 CLN5O75503 358 aa12.18□□□□□ -0.46
CCDC28B-204ENST00000469003 DFFBO76075 338 aa12.18□□□□□ -0.46
CCDC28B-204ENST00000469003 OPRK1P41145 380 aa12.18□□□□□ -0.46
CCDC28B-204ENST00000469003 RPL5P46777 297 aaKnown RBP12.18□□□□□ -0.46
CCDC28B-204ENST00000469003 MEF2DQ14814 521 aa12.18□□□□□ -0.46
CCDC28B-204ENST00000469003 BSXQ3C1V8 233 aa12.18□□□□□ -0.46
CCDC28B-204ENST00000469003 AARDQ4LEZ3 155 aa12.18□□□□□ -0.46
CCDC28B-204ENST00000469003 Q6ZRM9 215 aa12.18□□□□□ -0.46
CCDC28B-204ENST00000469003 FAM219AQ8IW50 185 aa12.18□□□□□ -0.46
CCDC28B-204ENST00000469003 OR4X1Q8NH49 305 aa12.18□□□□□ -0.46
CCDC28B-204ENST00000469003 TMEM222Q9H0R3 208 aa12.18□□□□□ -0.46
CCDC28B-204ENST00000469003 MS4A6AQ9H2W1 248 aa12.18□□□□□ -0.46
CCDC28B-204ENST00000469003 FNDC4Q9H6D8 234 aaPredicted RBP12.18□□□□□ -0.46
CCDC28B-204ENST00000469003 TMEM231Q9H6L2 316 aa12.18□□□□□ -0.46
CCDC28B-204ENST00000469003 MRPL36Q9P0J6 103 aaKnown RBP12.18□□□□□ -0.46
CCDC28B-204ENST00000469003 C14orf166Q9Y224 244 aaKnown RBP12.18□□□□□ -0.46
CCDC28B-204ENST00000469003 IGHV3-66A0A0C4DH42 116 aa12.17□□□□□ -0.46
CCDC28B-204ENST00000469003 SCGB2A1O75556 95 aa12.17□□□□□ -0.46
CCDC28B-204ENST00000469003 CDS2O95674 445 aa12.17□□□□□ -0.46
CCDC28B-204ENST00000469003 LY6G6CO95867 125 aa12.17□□□□□ -0.46
CCDC28B-204ENST00000469003 OR5AC1P0C628 307 aa12.17□□□□□ -0.46
CCDC28B-204ENST00000469003 NPPCP23582 126 aa12.17□□□□□ -0.46
CCDC28B-204ENST00000469003 ALDH3B2P48448 385 aa12.17□□□□□ -0.46
CCDC28B-204ENST00000469003 SPCS3P61009 180 aa12.17□□□□□ -0.46
CCDC28B-204ENST00000469003 SURF2Q15527 256 aaPredicted RBP12.17□□□□□ -0.46
CCDC28B-204ENST00000469003 FAAP20Q6NZ36 180 aa12.17□□□□□ -0.46
CCDC28B-204ENST00000469003 GPR141Q7Z602 305 aa12.17□□□□□ -0.46
CCDC28B-204ENST00000469003 OR52E5Q8NH55 327 aa12.17□□□□□ -0.46
CCDC28B-204ENST00000469003 GLYATL2Q8WU03 294 aa12.17□□□□□ -0.46
CCDC28B-204ENST00000469003 RTBDNQ9BSG5 229 aaPredicted RBP12.17□□□□□ -0.46
CCDC28B-204ENST00000469003 MRPS26Q9BYN8 205 aaKnown RBP12.17□□□□□ -0.46
CCDC28B-204ENST00000469003 CTNNBIP1Q9NSA3 81 aaPredicted RBP12.17□□□□□ -0.46
CCDC28B-204ENST00000469003 KLK5Q9Y337 293 aaPredicted RBP12.17□□□□□ -0.46
CCDC28B-204ENST00000469003 TEX13DA0A0J9YY54 714 aaPredicted RBP12.16□□□□□ -0.46
CCDC28B-204ENST00000469003 A0A1W2PS18 150 aa12.16□□□□□ -0.46
CCDC28B-204ENST00000469003 DISC1C4P0D8 188 aa12.16□□□□□ -0.46
CCDC28B-204ENST00000469003 CTDSP2O14595 271 aa12.16□□□□□ -0.46
CCDC28B-204ENST00000469003 DEFB131AP59861 70 aa12.16□□□□□ -0.46
CCDC28B-204ENST00000469003 RPL11P62913 178 aaKnown RBP12.16□□□□□ -0.46
CCDC28B-204ENST00000469003 MLANAQ16655 118 aa12.16□□□□□ -0.46
CCDC28B-204ENST00000469003 LHFPL5Q8TAF8 219 aa12.16□□□□□ -0.46
CCDC28B-204ENST00000469003 SMIM4Q8WVI0 70 aa12.16□□□□□ -0.46
CCDC28B-204ENST00000469003 RBPMSQ93062 196 aaKnown RBP12.16□□□□□ -0.46
CCDC28B-204ENST00000469003 RARRES2Q99969 163 aa12.16□□□□□ -0.46
CCDC28B-204ENST00000469003 NAA60Q9H7X0 242 aa12.16□□□□□ -0.46
CCDC28B-204ENST00000469003 TRAV30A0A087WSZ9 112 aa12.15□□□□□ -0.46
CCDC28B-204ENST00000469003 CRYBB3P26998 211 aa12.15□□□□□ -0.46
CCDC28B-204ENST00000469003 HTR2BP41595 481 aa12.15□□□□□ -0.46
CCDC28B-204ENST00000469003 DHODHQ02127 395 aa12.15□□□□□ -0.46
CCDC28B-204ENST00000469003 SPCS2Q15005 226 aa12.15□□□□□ -0.46
CCDC28B-204ENST00000469003 SELENOHQ8IZQ5 122 aaKnown RBP12.15□□□□□ -0.46
CCDC28B-204ENST00000469003 TMEM230Q96A57 120 aa12.15□□□□□ -0.46
CCDC28B-204ENST00000469003 METTL26Q96S19 204 aa12.15□□□□□ -0.46
CCDC28B-204ENST00000469003 RPS10-NUDT3A0A1W2PQS6 291 aa12.14□□□□□ -0.47
CCDC28B-204ENST00000469003 CTDSPLO15194 276 aa12.14□□□□□ -0.47
CCDC28B-204ENST00000469003 CA1P00915 261 aaPredicted RBP12.14□□□□□ -0.47
CCDC28B-204ENST00000469003 IGKV1-17P01599 117 aa12.14□□□□□ -0.47
CCDC28B-204ENST00000469003 AKAIN1P0CW23 69 aa12.14□□□□□ -0.47
CCDC28B-204ENST00000469003 LEMD1Q68G75 181 aa12.14□□□□□ -0.47
CCDC28B-204ENST00000469003 FAM24BQ8N5W8 94 aa12.14□□□□□ -0.47
CCDC28B-204ENST00000469003 OR4C16Q8NGL9 310 aa12.14□□□□□ -0.47
CCDC28B-204ENST00000469003 OR11H2Q8NH07 326 aa12.14□□□□□ -0.47
CCDC28B-204ENST00000469003 PHLDA1Q8WV24 401 aaPredicted RBP12.14□□□□□ -0.47
CCDC28B-204ENST00000469003 GPR146Q96CH1 333 aa12.14□□□□□ -0.47
CCDC28B-204ENST00000469003 C11orf68Q9H3H3 251 aaKnown RBP12.14□□□□□ -0.47
CCDC28B-204ENST00000469003 HEYLQ9NQ87 328 aaPredicted RBP12.14□□□□□ -0.47
CCDC28B-204ENST00000469003 RABL2AQ9UBK7 228 aaPredicted RBP12.14□□□□□ -0.47
CCDC28B-204ENST00000469003 RABAC1Q9UI14 185 aa12.14□□□□□ -0.47
CCDC28B-204ENST00000469003 RABL2BQ9UNT1 228 aa12.14□□□□□ -0.47
CCDC28B-204ENST00000469003 GPR132Q9UNW8 380 aa12.14□□□□□ -0.47
CCDC28B-204ENST00000469003 CRYM-AS1A6NIL9 109 aa12.13□□□□□ -0.47
CCDC28B-204ENST00000469003 IL18Q14116 193 aa12.13□□□□□ -0.47
CCDC28B-204ENST00000469003 TIGITQ495A1 244 aa12.13□□□□□ -0.47
CCDC28B-204ENST00000469003 C2orf83Q53S99 150 aa12.13□□□□□ -0.47
CCDC28B-204ENST00000469003 DIRAS2Q96HU8 199 aa12.13□□□□□ -0.47
CCDC28B-204ENST00000469003 NARS2Q96I59 477 aaKnown RBP12.13□□□□□ -0.47
CCDC28B-204ENST00000469003 PRRT1Q99946 306 aa12.13□□□□□ -0.47
CCDC28B-204ENST00000469003 CACNG5Q9UF02 275 aa12.13□□□□□ -0.47
CCDC28B-204ENST00000469003 K7EQG2 157 aa12.12□□□□□ -0.47
CCDC28B-204ENST00000469003 SLC25A4P12235 298 aa12.12□□□□□ -0.47
CCDC28B-204ENST00000469003 P2RY1P47900 373 aa12.12□□□□□ -0.47
CCDC28B-204ENST00000469003 TMEM187Q14656 261 aa12.12□□□□□ -0.47
CCDC28B-204ENST00000469003 TMEM268Q5VZI3 342 aa12.12□□□□□ -0.47
CCDC28B-204ENST00000469003 STHQ8IWL8 128 aa12.12□□□□□ -0.47
CCDC28B-204ENST00000469003 STXBP6Q8NFX7 210 aa12.12□□□□□ -0.47
CCDC28B-204ENST00000469003 OR1S2Q8NGQ3 325 aa12.12□□□□□ -0.47
CCDC28B-204ENST00000469003 RNASEH2CQ8TDP1 164 aaKnown RBP12.12□□□□□ -0.47
CCDC28B-204ENST00000469003 GRAMD2BQ96HH9 432 aa12.12□□□□□ -0.47
CCDC28B-204ENST00000469003 CCDC59Q9P031 241 aaKnown RBP12.12□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 45.2 ms