RNA–Protein interactions for RNA: ENST00000454428.5

UBE2D4-209, Transcript of ubiquitin conjugating enzyme E2 D4 (putative), humanhuman

TSL 3

Gene UBE2D4, Length 288 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UBE2D4-209ENST00000454428 IGKV1-39P01597 117 aa12.13□□□□□ -0.47
UBE2D4-209ENST00000454428 IGKV1D-39P04432 117 aa12.13□□□□□ -0.47
UBE2D4-209ENST00000454428 DHRS11Q6UWP2 260 aa12.13□□□□□ -0.47
UBE2D4-209ENST00000454428 C6orf223Q8N319 242 aa12.13□□□□□ -0.47
UBE2D4-209ENST00000454428 OR5H6Q8NGV6 325 aa12.13□□□□□ -0.47
UBE2D4-209ENST00000454428 TSC22D3Q99576 134 aa12.13□□□□□ -0.47
UBE2D4-209ENST00000454428 YTHDF1Q9BYJ9 559 aaKnown RBP12.13□□□□□ -0.47
UBE2D4-209ENST00000454428 NBDYA0A0U1RRE5 68 aa12.12□□□□□ -0.47
UBE2D4-209ENST00000454428 TMEM189A5PLL7 270 aa12.12□□□□□ -0.47
UBE2D4-209ENST00000454428 HTN3P15516 51 aa12.12□□□□□ -0.47
UBE2D4-209ENST00000454428 FAM3BP58499 235 aaPredicted RBP12.12□□□□□ -0.47
UBE2D4-209ENST00000454428 HERV-K104P61576 105 aa12.12□□□□□ -0.47
UBE2D4-209ENST00000454428 NUTF2P61970 127 aaKnown RBP12.12□□□□□ -0.47
UBE2D4-209ENST00000454428 TBCEQ15813 527 aaPredicted RBP12.12□□□□□ -0.47
UBE2D4-209ENST00000454428 SPINK9Q5DT21 86 aa12.12□□□□□ -0.47
UBE2D4-209ENST00000454428 SPATA12Q7Z6I5 190 aa12.12□□□□□ -0.47
UBE2D4-209ENST00000454428 ZNRF2Q8NHG8 242 aa12.12□□□□□ -0.47
UBE2D4-209ENST00000454428 GLMPQ8WWB7 406 aa12.12□□□□□ -0.47
UBE2D4-209ENST00000454428 BORCS5Q969J3 196 aa12.12□□□□□ -0.47
UBE2D4-209ENST00000454428 FXYD6Q9H0Q3 95 aa12.12□□□□□ -0.47
UBE2D4-209ENST00000454428 MEIS3P1A6NDR6 274 aa12.11□□□□□ -0.47
UBE2D4-209ENST00000454428 SMIM9A6NGZ8 99 aa12.11□□□□□ -0.47
UBE2D4-209ENST00000454428 FAM90A26D6RGX4 464 aa12.11□□□□□ -0.47
UBE2D4-209ENST00000454428 IGKV1-17P01599 117 aa12.11□□□□□ -0.47
UBE2D4-209ENST00000454428 HSPE1P61604 102 aaKnown RBP12.11□□□□□ -0.47
UBE2D4-209ENST00000454428 OXA1LQ15070 435 aa12.11□□□□□ -0.47
UBE2D4-209ENST00000454428 MLANAQ16655 118 aa12.11□□□□□ -0.47
UBE2D4-209ENST00000454428 KCTD21Q4G0X4 260 aa12.11□□□□□ -0.47
UBE2D4-209ENST00000454428 TSPAN14Q8NG11 270 aa12.11□□□□□ -0.47
UBE2D4-209ENST00000454428 ZNF2Q9BSG1 426 aaPredicted RBP12.11□□□□□ -0.47
UBE2D4-209ENST00000454428 FNDC4Q9H6D8 234 aaPredicted RBP12.11□□□□□ -0.47
UBE2D4-209ENST00000454428 RNF167Q9H6Y7 350 aa12.11□□□□□ -0.47
UBE2D4-209ENST00000454428 AUNIPQ9H7T9 357 aa12.11□□□□□ -0.47
UBE2D4-209ENST00000454428 RFNGQ9Y644 331 aa12.11□□□□□ -0.47
UBE2D4-209ENST00000454428 HLA-DRB4P13762 266 aa12.1□□□□□ -0.47
UBE2D4-209ENST00000454428 RFX2P48378 723 aa12.1□□□□□ -0.47
UBE2D4-209ENST00000454428 DEFB1P60022 68 aa12.1□□□□□ -0.47
UBE2D4-209ENST00000454428 KRTAP10-2P60368 255 aa12.1□□□□□ -0.47
UBE2D4-209ENST00000454428 GDF5OSQ5U4N7 250 aa12.1□□□□□ -0.47
UBE2D4-209ENST00000454428 SFXN4Q6P4A7 337 aa12.1□□□□□ -0.47
UBE2D4-209ENST00000454428 C16orf54Q6UWD8 224 aa12.1□□□□□ -0.47
UBE2D4-209ENST00000454428 OR4A16Q8NH70 328 aa12.1□□□□□ -0.47
UBE2D4-209ENST00000454428 EHFQ9NZC4 300 aa12.1□□□□□ -0.47
UBE2D4-209ENST00000454428 HLA-DRB4X5D2U9 266 aa12.1□□□□□ -0.47
UBE2D4-209ENST00000454428 CLN5O75503 358 aa12.09□□□□□ -0.47
UBE2D4-209ENST00000454428 FXYD7P58549 80 aa12.09□□□□□ -0.47
UBE2D4-209ENST00000454428 ERHP84090 104 aaKnown RBP12.09□□□□□ -0.47
UBE2D4-209ENST00000454428 IZUMO4Q1ZYL8 232 aa12.09□□□□□ -0.47
UBE2D4-209ENST00000454428 TXNL4BQ9NX01 149 aaKnown RBP12.09□□□□□ -0.47
UBE2D4-209ENST00000454428 RRP15Q9Y3B9 282 aaKnown RBP12.09□□□□□ -0.47
UBE2D4-209ENST00000454428 IGHV3OR16-12A0A075B7B8 117 aa12.08□□□□□ -0.48
UBE2D4-209ENST00000454428 TEX48A0A1B0GUV7 120 aa12.08□□□□□ -0.48
UBE2D4-209ENST00000454428 GPR31O00270 319 aa12.08□□□□□ -0.48
UBE2D4-209ENST00000454428 RNASE2P10153 161 aaKnown RBP12.08□□□□□ -0.48
UBE2D4-209ENST00000454428 TIGITQ495A1 244 aa12.08□□□□□ -0.48
UBE2D4-209ENST00000454428 H2BFWTQ7Z2G1 175 aa12.08□□□□□ -0.48
UBE2D4-209ENST00000454428 ZNF709Q8N972 641 aa12.08□□□□□ -0.48
UBE2D4-209ENST00000454428 OR4X1Q8NH49 305 aa12.08□□□□□ -0.48
UBE2D4-209ENST00000454428 FAM212BQ9NTI7 297 aaPredicted RBP12.08□□□□□ -0.48
UBE2D4-209ENST00000454428 ANAPC10Q9UM13 185 aa12.08□□□□□ -0.48
UBE2D4-209ENST00000454428 TMED3Q9Y3Q3 217 aa12.08□□□□□ -0.48
UBE2D4-209ENST00000454428 INS-IGF2F8WCM5 200 aa12.07□□□□□ -0.48
UBE2D4-209ENST00000454428 AQP4P55087 323 aa12.07□□□□□ -0.48
UBE2D4-209ENST00000454428 PHLDA2Q53GA4 152 aa12.07□□□□□ -0.48
UBE2D4-209ENST00000454428 CMTM1Q8IZ96 169 aa12.07□□□□□ -0.48
UBE2D4-209ENST00000454428 TMEM230Q96A57 120 aa12.07□□□□□ -0.48
UBE2D4-209ENST00000454428 MRGPRFQ96AM1 343 aa12.07□□□□□ -0.48
UBE2D4-209ENST00000454428 SEPSECSQ9HD40 501 aaKnown RBP12.07□□□□□ -0.48
UBE2D4-209ENST00000454428 UBR4Q5T4S7 5183 aa12.06□□□□□ -0.48
UBE2D4-209ENST00000454428 A0A0A6YYH2 397 aa12.06□□□□□ -0.48
UBE2D4-209ENST00000454428 A6NJ64 397 aa12.06□□□□□ -0.48
UBE2D4-209ENST00000454428 EPM2AB3EWF7 344 aa12.06□□□□□ -0.48
UBE2D4-209ENST00000454428 IGKV3-20P01619 116 aa12.06□□□□□ -0.48
UBE2D4-209ENST00000454428 PMP2P02689 132 aa12.06□□□□□ -0.48
UBE2D4-209ENST00000454428 CBX5P45973 191 aa12.06□□□□□ -0.48
UBE2D4-209ENST00000454428 SNRPD3P62318 126 aaKnown RBP12.06□□□□□ -0.48
UBE2D4-209ENST00000454428 C15orf53Q8NAA6 179 aa12.06□□□□□ -0.48
UBE2D4-209ENST00000454428 YTHDF2Q9Y5A9 579 aaKnown RBP12.06□□□□□ -0.48
UBE2D4-209ENST00000454428 CLEC2LP0C7M8 214 aa12.05□□□□□ -0.48
UBE2D4-209ENST00000454428 INAFM2P0DMQ5 153 aa12.05□□□□□ -0.48
UBE2D4-209ENST00000454428 EIF2B2P49770 351 aaKnown RBP12.05□□□□□ -0.48
UBE2D4-209ENST00000454428 AP2S1P53680 142 aaPredicted RBP12.05□□□□□ -0.48
UBE2D4-209ENST00000454428 TBC1D26Q86UD7 250 aa12.05□□□□□ -0.48
UBE2D4-209ENST00000454428 C1orf158Q8N1D5 194 aa12.05□□□□□ -0.48
UBE2D4-209ENST00000454428 NARS2Q96I59 477 aaKnown RBP12.05□□□□□ -0.48
UBE2D4-209ENST00000454428 ATG101Q9BSB4 218 aa12.05□□□□□ -0.48
UBE2D4-209ENST00000454428 VCXQ9H320 206 aa12.05□□□□□ -0.48
UBE2D4-209ENST00000454428 NRN1Q9NPD7 142 aa12.05□□□□□ -0.48
UBE2D4-209ENST00000454428 A0A0B4J293 547 aa12.04□□□□□ -0.48
UBE2D4-209ENST00000454428 HNRNPCP07910 306 aaKnown RBP eCLIP12.04□□□□□ -0.48
UBE2D4-209ENST00000454428 P0C879 139 aa12.04□□□□□ -0.48
UBE2D4-209ENST00000454428 SDC2P34741 201 aa12.04□□□□□ -0.48
UBE2D4-209ENST00000454428 SNCAP37840 140 aa12.04□□□□□ -0.48
UBE2D4-209ENST00000454428 NKX2-1P43699 371 aaPredicted RBP12.04□□□□□ -0.48
UBE2D4-209ENST00000454428 SCAND1P57086 179 aa12.04□□□□□ -0.48
UBE2D4-209ENST00000454428 USF2Q15853 346 aaPredicted RBP12.04□□□□□ -0.48
UBE2D4-209ENST00000454428 KRTAP1-5Q9BYS1 174 aa12.04□□□□□ -0.48
UBE2D4-209ENST00000454428 FLG2Q5D862 2391 aaPredicted RBP12.03□□□□□ -0.48
UBE2D4-209ENST00000454428 LOC102723971A0A1B0GUV8 181 aa12.03□□□□□ -0.48
UBE2D4-209ENST00000454428 CORTO00230 105 aa12.03□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 87.5 ms