RNA–Protein interactions for RNA: ENST00000409769.6

CLK1-203, Transcript of CDC like kinase 1, humanhuman

TSL 2 BASIC

Gene CLK1, Length 1,192 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK1-203ENST00000409769 TMED4Q7Z7H5 227 aa3.13□□□□□ -1.91
CLK1-203ENST00000409769 CMTM1Q8IZ96 169 aa3.13□□□□□ -1.91
CLK1-203ENST00000409769 PNKDQ8N490 385 aa3.13□□□□□ -1.91
CLK1-203ENST00000409769 CCDC71LQ8N9Z2 235 aa3.13□□□□□ -1.91
CLK1-203ENST00000409769 OR52B4Q8NGK2 314 aa3.13□□□□□ -1.91
CLK1-203ENST00000409769 OR13D1Q8NGV5 346 aa3.13□□□□□ -1.91
CLK1-203ENST00000409769 ZNF431Q8TF32 576 aaPredicted RBP3.13□□□□□ -1.91
CLK1-203ENST00000409769 GLYATL2Q8WU03 294 aa3.13□□□□□ -1.91
CLK1-203ENST00000409769 MITD1Q8WV92 249 aa3.13□□□□□ -1.91
CLK1-203ENST00000409769 TP53RKQ96S44 253 aa3.13□□□□□ -1.91
CLK1-203ENST00000409769 HSD17B10Q99714 261 aaKnown RBP3.13□□□□□ -1.91
CLK1-203ENST00000409769 SEC22CQ9BRL7 303 aa3.13□□□□□ -1.91
CLK1-203ENST00000409769 NAA60Q9H7X0 242 aa3.13□□□□□ -1.91
CLK1-203ENST00000409769 Q9HAA7 133 aa3.13□□□□□ -1.91
CLK1-203ENST00000409769 LPAR2Q9HBW0 351 aa3.13□□□□□ -1.91
CLK1-203ENST00000409769 FAM212BQ9NTI7 297 aaPredicted RBP3.13□□□□□ -1.91
CLK1-203ENST00000409769 PIPOXQ9P0Z9 390 aa3.13□□□□□ -1.91
CLK1-203ENST00000409769 ONECUT1Q9UBC0 465 aa3.13□□□□□ -1.91
CLK1-203ENST00000409769 SHPKQ9UHJ6 478 aa3.13□□□□□ -1.91
CLK1-203ENST00000409769 PRO0461Q9UI25 63 aa3.13□□□□□ -1.91
CLK1-203ENST00000409769 C14orf166Q9Y224 244 aaKnown RBP3.13□□□□□ -1.91
CLK1-203ENST00000409769 ALG5Q9Y673 324 aa3.13□□□□□ -1.91
CLK1-203ENST00000409769 ASH1LQ9NR48 2969 aaKnown RBP3.12□□□□□ -1.91
CLK1-203ENST00000409769 FLNBO75369 2602 aaKnown RBP3.12□□□□□ -1.91
CLK1-203ENST00000409769 SONP18583 2426 aaKnown RBP3.12□□□□□ -1.91
CLK1-203ENST00000409769 CENPVL3A0A0U1RRI6 287 aa3.12□□□□□ -1.91
CLK1-203ENST00000409769 C3orf85A0A1B0GTC6 90 aa3.12□□□□□ -1.91
CLK1-203ENST00000409769 VGLL3A8MV65 326 aa3.12□□□□□ -1.91
CLK1-203ENST00000409769 H0Y980 276 aa3.12□□□□□ -1.91
CLK1-203ENST00000409769 H0YJW9 148 aa3.12□□□□□ -1.91
CLK1-203ENST00000409769 RBFOX2O43251 390 aaKnown RBP eCLIP3.12□□□□□ -1.91
CLK1-203ENST00000409769 ZNF253O75346 499 aa3.12□□□□□ -1.91
CLK1-203ENST00000409769 B3GALNT1O75752 331 aa3.12□□□□□ -1.91
CLK1-203ENST00000409769 CDS2O95674 445 aa3.12□□□□□ -1.91
CLK1-203ENST00000409769 IGKV1-39P01597 117 aa3.12□□□□□ -1.91
CLK1-203ENST00000409769 HLA-AP01891 365 aaKnown RBP3.12□□□□□ -1.91
CLK1-203ENST00000409769 IGKV1D-39P04432 117 aa3.12□□□□□ -1.91
CLK1-203ENST00000409769 ARG1P05089 322 aa3.12□□□□□ -1.91
CLK1-203ENST00000409769 SNRPCP09234 159 aaKnown RBP3.12□□□□□ -1.91
CLK1-203ENST00000409769 P0C879 139 aa3.12□□□□□ -1.91
CLK1-203ENST00000409769 CT45A6P0DMU7 189 aa3.12□□□□□ -1.91
CLK1-203ENST00000409769 CT45A5P0DMU8 189 aa3.12□□□□□ -1.91
CLK1-203ENST00000409769 CT45A7P0DMV0 189 aa3.12□□□□□ -1.91
CLK1-203ENST00000409769 AKR1C4P17516 323 aa3.12□□□□□ -1.91
CLK1-203ENST00000409769 HLA-GP17693 338 aa3.12□□□□□ -1.91
CLK1-203ENST00000409769 COX7A1P24310 79 aa3.12□□□□□ -1.91
CLK1-203ENST00000409769 BCAP31P51572 246 aa3.12□□□□□ -1.91
CLK1-203ENST00000409769 UBE2E1P51965 193 aa3.12□□□□□ -1.91
CLK1-203ENST00000409769 PRRX1P54821 245 aa3.12□□□□□ -1.91
CLK1-203ENST00000409769 HAGHQ16775 308 aa3.12□□□□□ -1.91
CLK1-203ENST00000409769 ABCA11PQ4W5N1 156 aa3.12□□□□□ -1.91
CLK1-203ENST00000409769 KLF17Q5JT82 389 aaPredicted RBP3.12□□□□□ -1.91
CLK1-203ENST00000409769 TPTE2P1Q5T6R2 138 aa3.12□□□□□ -1.91
CLK1-203ENST00000409769 MINOS1Q5TGZ0 78 aa3.12□□□□□ -1.91
CLK1-203ENST00000409769 NCR3LG1Q68D85 454 aa3.12□□□□□ -1.91
CLK1-203ENST00000409769 LHFPL4Q7Z7J7 247 aa3.12□□□□□ -1.91
CLK1-203ENST00000409769 SGPP2Q8IWX5 399 aa3.12□□□□□ -1.91
CLK1-203ENST00000409769 OR11H7Q8NGC8 314 aa3.12□□□□□ -1.91
CLK1-203ENST00000409769 LHFPL5Q8TAF8 219 aa3.12□□□□□ -1.91
CLK1-203ENST00000409769 IL22RA2Q969J5 263 aa3.12□□□□□ -1.91
CLK1-203ENST00000409769 TMEM56Q96MV1 263 aa3.12□□□□□ -1.91
CLK1-203ENST00000409769 NABP2Q9BQ15 211 aa3.12□□□□□ -1.91
CLK1-203ENST00000409769 BEX2Q9BXY8 128 aa3.12□□□□□ -1.91
CLK1-203ENST00000409769 TMEM222Q9H0R3 208 aa3.12□□□□□ -1.91
CLK1-203ENST00000409769 OR51J1Q9H342 316 aa3.12□□□□□ -1.91
CLK1-203ENST00000409769 BEX1Q9HBH7 125 aa3.12□□□□□ -1.91
CLK1-203ENST00000409769 DHRS4-AS1Q9P1J3 65 aa3.12□□□□□ -1.91
CLK1-203ENST00000409769 DPM3Q9P2X0 92 aa3.12□□□□□ -1.91
CLK1-203ENST00000409769 TBL2Q9Y4P3 447 aaKnown RBP3.12□□□□□ -1.91
CLK1-203ENST00000409769 AMMECR1Q9Y4X0 333 aaPredicted RBP3.12□□□□□ -1.91
CLK1-203ENST00000409769 RBM7Q9Y580 266 aaKnown RBP3.12□□□□□ -1.91
CLK1-203ENST00000409769 MINOS1-NBL1R4GNA1 71 aa3.12□□□□□ -1.91
CLK1-203ENST00000409769 TMEM56-RWDD3S4R434 201 aa3.12□□□□□ -1.91
CLK1-203ENST00000409769 ZANQ9Y493 2812 aa3.11□□□□□ -1.91
CLK1-203ENST00000409769 TRAV40A0A0B4J280 105 aa3.11□□□□□ -1.91
CLK1-203ENST00000409769 IGHV1-69DA0A0B4J2H0 117 aa3.11□□□□□ -1.91
CLK1-203ENST00000409769 IGHV1-3A0A0C4DH29 117 aa3.11□□□□□ -1.91
CLK1-203ENST00000409769 DUXBA0A1W2PPF3 345 aa3.11□□□□□ -1.91
CLK1-203ENST00000409769 FAM168BA1KXE4 195 aa3.11□□□□□ -1.91
CLK1-203ENST00000409769 LEUTXA8MZ59 168 aa3.11□□□□□ -1.91
CLK1-203ENST00000409769 OOSP1A8MZH6 123 aa3.11□□□□□ -1.91
CLK1-203ENST00000409769 M0R1X1 148 aa3.11□□□□□ -1.91
CLK1-203ENST00000409769 TOR1AO14656 332 aa3.11□□□□□ -1.91
CLK1-203ENST00000409769 CD5LO43866 347 aa3.11□□□□□ -1.91
CLK1-203ENST00000409769 CREBL2O60519 120 aaPredicted RBP3.11□□□□□ -1.91
CLK1-203ENST00000409769 RAMP3O60896 148 aa3.11□□□□□ -1.91
CLK1-203ENST00000409769 HPRT1P00492 218 aa3.11□□□□□ -1.91
CLK1-203ENST00000409769 TGFAP01135 160 aa3.11□□□□□ -1.91
CLK1-203ENST00000409769 IGHV1-69P01742 117 aa3.11□□□□□ -1.91
CLK1-203ENST00000409769 SULT1A3P0DMM9 295 aa3.11□□□□□ -1.91
CLK1-203ENST00000409769 SULT1A4P0DMN0 295 aa3.11□□□□□ -1.91
CLK1-203ENST00000409769 RPA2P15927 270 aa3.11□□□□□ -1.91
CLK1-203ENST00000409769 CXCL3P19876 107 aa3.11□□□□□ -1.91
CLK1-203ENST00000409769 IL3RAP26951 378 aa3.11□□□□□ -1.91
CLK1-203ENST00000409769 HTR1DP28221 377 aa3.11□□□□□ -1.91
CLK1-203ENST00000409769 S100GP29377 79 aa3.11□□□□□ -1.91
CLK1-203ENST00000409769 KIR2DS2P43631 304 aa3.11□□□□□ -1.91
CLK1-203ENST00000409769 RRAS2P62070 204 aaPredicted RBP3.11□□□□□ -1.91
CLK1-203ENST00000409769 CATR1Q13166 79 aa3.11□□□□□ -1.91
CLK1-203ENST00000409769 CBX3Q13185 183 aa3.11□□□□□ -1.91
Retrieved 100 of 20,778 RNA–protein pairs in 15.5 ms