RNA–Protein interactions for RNA: ENST00000614932.1

VPS39-214, Transcript of VPS39, HOPS complex subunit, humanhuman

Gene VPS39, Length 2,835 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-214ENST00000614932 KLRD1Q13241 179 aa8.47□□□□□ -1.05
VPS39-214ENST00000614932 FAM162BQ5T6X4 162 aa8.47□□□□□ -1.05
VPS39-214ENST00000614932 ACP7Q6ZNF0 438 aa8.47□□□□□ -1.05
VPS39-214ENST00000614932 DDB2Q92466 427 aa8.47□□□□□ -1.05
VPS39-214ENST00000614932 TMEM54Q969K7 222 aa8.47□□□□□ -1.05
VPS39-214ENST00000614932 CDIP1Q9H305 208 aa8.47□□□□□ -1.05
VPS39-214ENST00000614932 C9JCJ5 164 aa8.46□□□□□ -1.05
VPS39-214ENST00000614932 LEPROTL1O95214 131 aa8.46□□□□□ -1.05
VPS39-214ENST00000614932 IGHV3-9P01782 118 aa8.46□□□□□ -1.05
VPS39-214ENST00000614932 Q0VFX4 171 aa8.46□□□□□ -1.05
VPS39-214ENST00000614932 SPANXN5Q5MJ07 72 aa8.46□□□□□ -1.05
VPS39-214ENST00000614932 ABHD17BQ5VST6 288 aa8.46□□□□□ -1.05
VPS39-214ENST00000614932 C20orf78Q9BR46 151 aa8.46□□□□□ -1.05
VPS39-214ENST00000614932 ZNF331Q9NQX6 463 aaPredicted RBP8.46□□□□□ -1.05
VPS39-214ENST00000614932 LOXL2Q9Y4K0 774 aa8.46□□□□□ -1.05
VPS39-214ENST00000614932 SPENQ96T58 3664 aaKnown RBP8.46□□□□□ -1.06
VPS39-214ENST00000614932 A0A0J9YW62 118 aa8.46□□□□□ -1.06
VPS39-214ENST00000614932 ZIC3O60481 467 aa8.46□□□□□ -1.06
VPS39-214ENST00000614932 IGHV3-7P01780 117 aa8.46□□□□□ -1.06
VPS39-214ENST00000614932 SMIM13P0DJ93 91 aa8.46□□□□□ -1.06
VPS39-214ENST00000614932 VDAC2P45880 294 aaPredicted RBP8.46□□□□□ -1.06
VPS39-214ENST00000614932 PRR31Q5SQ13 230 aa8.46□□□□□ -1.06
VPS39-214ENST00000614932 DTX1Q86Y01 620 aa8.46□□□□□ -1.06
VPS39-214ENST00000614932 TM2D2Q9BX73 214 aa8.46□□□□□ -1.06
VPS39-214ENST00000614932 KCNS2Q9ULS6 477 aa8.46□□□□□ -1.06
VPS39-214ENST00000614932 MED12LQ86YW9 2145 aa8.46□□□□□ -1.06
VPS39-214ENST00000614932 A0A1W2PRD5 423 aa8.45□□□□□ -1.06
VPS39-214ENST00000614932 A0A1W2PRF3 423 aa8.45□□□□□ -1.06
VPS39-214ENST00000614932 A0A1W2PRM7 423 aa8.45□□□□□ -1.06
VPS39-214ENST00000614932 FCGR2AP12318 317 aa8.45□□□□□ -1.06
VPS39-214ENST00000614932 TCL1AP56279 114 aa8.45□□□□□ -1.06
VPS39-214ENST00000614932 SPINK14Q6IE38 97 aa8.45□□□□□ -1.06
VPS39-214ENST00000614932 SLC25A47Q6Q0C1 308 aa8.45□□□□□ -1.06
VPS39-214ENST00000614932 ZNF818PQ6ZRF7 136 aa8.45□□□□□ -1.06
VPS39-214ENST00000614932 Q6ZUT4 128 aa8.45□□□□□ -1.06
VPS39-214ENST00000614932 LINC00173Q6ZV60 143 aa8.45□□□□□ -1.06
VPS39-214ENST00000614932 TUSC5Q8IXB3 177 aa8.45□□□□□ -1.06
VPS39-214ENST00000614932 GAPTQ8N292 157 aa8.45□□□□□ -1.06
VPS39-214ENST00000614932 FADS6Q8N9I5 356 aa8.45□□□□□ -1.06
VPS39-214ENST00000614932 ARPC1AQ92747 370 aa8.45□□□□□ -1.06
VPS39-214ENST00000614932 OXGR1Q96P68 337 aa8.45□□□□□ -1.06
VPS39-214ENST00000614932 GPHA2Q96T91 129 aa8.45□□□□□ -1.06
VPS39-214ENST00000614932 SRXN1Q9BYN0 137 aa8.45□□□□□ -1.06
VPS39-214ENST00000614932 EP300Q09472 2414 aaPredicted RBP8.45□□□□□ -1.06
VPS39-214ENST00000614932 KMT2EQ8IZD2 1858 aa8.45□□□□□ -1.06
VPS39-214ENST00000614932 NCOA6Q14686 2063 aaPredicted RBP8.45□□□□□ -1.06
VPS39-214ENST00000614932 A0A087WX48 190 aa8.45□□□□□ -1.06
VPS39-214ENST00000614932 LOC102723996A0A087X1L8 192 aa8.45□□□□□ -1.06
VPS39-214ENST00000614932 H0Y980 276 aa8.45□□□□□ -1.06
VPS39-214ENST00000614932 LIFP15018 202 aa8.45□□□□□ -1.06
VPS39-214ENST00000614932 INSL3P51460 131 aa8.45□□□□□ -1.06
VPS39-214ENST00000614932 WIPI1Q5MNZ9 446 aaPredicted RBP8.45□□□□□ -1.06
VPS39-214ENST00000614932 LCNL1Q6ZST4 164 aa8.45□□□□□ -1.06
VPS39-214ENST00000614932 ZDHHC23Q8IYP9 409 aa8.45□□□□□ -1.06
VPS39-214ENST00000614932 SYT8Q8NBV8 401 aa8.45□□□□□ -1.06
VPS39-214ENST00000614932 H1FXQ92522 213 aaKnown RBP8.45□□□□□ -1.06
VPS39-214ENST00000614932 MAP1LC3CQ9BXW4 147 aa8.45□□□□□ -1.06
VPS39-214ENST00000614932 BOD1L1Q8NFC6 3051 aa8.45□□□□□ -1.06
VPS39-214ENST00000614932 PIGBOS1A0A0B4J2F0 54 aa8.44□□□□□ -1.06
VPS39-214ENST00000614932 GAGE12JA6NER3 117 aa8.44□□□□□ -1.06
VPS39-214ENST00000614932 GAGE7O76087 117 aa8.44□□□□□ -1.06
VPS39-214ENST00000614932 OR7C1O76099 320 aaPredicted RBP8.44□□□□□ -1.06
VPS39-214ENST00000614932 GAGE12FP0CL80 117 aa8.44□□□□□ -1.06
VPS39-214ENST00000614932 GAGE12GP0CL81 117 aa8.44□□□□□ -1.06
VPS39-214ENST00000614932 GAGE12IP0CL82 117 aa8.44□□□□□ -1.06
VPS39-214ENST00000614932 DEFA4P12838 97 aa8.44□□□□□ -1.06
VPS39-214ENST00000614932 KIR2DL2P43627 348 aaPredicted RBP8.44□□□□□ -1.06
VPS39-214ENST00000614932 SRYQ05066 204 aa8.44□□□□□ -1.06
VPS39-214ENST00000614932 GAGE4Q13068 117 aa8.44□□□□□ -1.06
VPS39-214ENST00000614932 CATR1Q13166 79 aa8.44□□□□□ -1.06
VPS39-214ENST00000614932 OR8B8Q15620 311 aa8.44□□□□□ -1.06
VPS39-214ENST00000614932 RNF138Q8WVD3 245 aa8.44□□□□□ -1.06
VPS39-214ENST00000614932 HES7Q9BYE0 225 aa8.44□□□□□ -1.06
VPS39-214ENST00000614932 VCX2Q9H322 139 aa8.44□□□□□ -1.06
VPS39-214ENST00000614932 GCM1Q9NP62 436 aa8.44□□□□□ -1.06
VPS39-214ENST00000614932 FGF6P10767 208 aa8.44□□□□□ -1.06
VPS39-214ENST00000614932 NTF4P34130 210 aa8.44□□□□□ -1.06
VPS39-214ENST00000614932 RPL8P62917 257 aaKnown RBP8.44□□□□□ -1.06
VPS39-214ENST00000614932 PDLIM3Q53GG5 364 aaPredicted RBP8.44□□□□□ -1.06
VPS39-214ENST00000614932 SLC25A53Q5H9E4 307 aa8.44□□□□□ -1.06
VPS39-214ENST00000614932 GCSAMLQ5JQS6 135 aa8.44□□□□□ -1.06
VPS39-214ENST00000614932 SSX8Q7RTT4 187 aa8.44□□□□□ -1.06
VPS39-214ENST00000614932 PPP1R32Q7Z5V6 425 aa8.44□□□□□ -1.06
VPS39-214ENST00000614932 TMEM147Q9BVK8 224 aa8.44□□□□□ -1.06
VPS39-214ENST00000614932 OSTCQ9NRP0 149 aa8.44□□□□□ -1.06
VPS39-214ENST00000614932 OR1A1Q9P1Q5 309 aa8.44□□□□□ -1.06
VPS39-214ENST00000614932 DMXL1Q9Y485 3027 aa8.44□□□□□ -1.06
VPS39-214ENST00000614932 IGHV1-24A0A0C4DH33 117 aa8.44□□□□□ -1.06
VPS39-214ENST00000614932 A1L4Q6 167 aa8.44□□□□□ -1.06
VPS39-214ENST00000614932 PINLYPA6NC86 204 aa8.44□□□□□ -1.06
VPS39-214ENST00000614932 IZUMO1RA6ND01 250 aa8.44□□□□□ -1.06
VPS39-214ENST00000614932 SH2D7A6NKC9 451 aaPredicted RBP8.44□□□□□ -1.06
VPS39-214ENST00000614932 CCL1P22362 96 aa8.44□□□□□ -1.06
VPS39-214ENST00000614932 RPL31P62899 125 aaKnown RBP8.44□□□□□ -1.06
VPS39-214ENST00000614932 TMEM42Q69YG0 159 aa8.44□□□□□ -1.06
VPS39-214ENST00000614932 RASL11AQ6T310 242 aa8.44□□□□□ -1.06
VPS39-214ENST00000614932 Q6ZRM9 215 aa8.44□□□□□ -1.06
VPS39-214ENST00000614932 OR4X2Q8NGF9 303 aa8.44□□□□□ -1.06
VPS39-214ENST00000614932 LRRC29Q8WV35 223 aa8.44□□□□□ -1.06
VPS39-214ENST00000614932 SRSF8Q9BRL6 282 aaKnown RBP8.44□□□□□ -1.06
Retrieved 100 of 20,778 RNA–protein pairs in 47 ms