RNA–Protein interactions for RNA: ENST00000514096.5

LIMCH1-219, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 3,543 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-219ENST00000514096 GABARAPL3Q9BY60 117 aa6.48□□□□□ -1.37
LIMCH1-219ENST00000514096 TRAV18A0A075B6X5 111 aa6.48□□□□□ -1.37
LIMCH1-219ENST00000514096 IGHV3-72A0A0B4J1Y9 119 aa6.48□□□□□ -1.37
LIMCH1-219ENST00000514096 OR5B21A6NL26 309 aa6.48□□□□□ -1.37
LIMCH1-219ENST00000514096 ZFP92A6NM28 416 aa6.48□□□□□ -1.37
LIMCH1-219ENST00000514096 SLC17A3O00476 420 aa6.48□□□□□ -1.37
LIMCH1-219ENST00000514096 ISLRO14498 428 aa6.48□□□□□ -1.37
LIMCH1-219ENST00000514096 CD5LO43866 347 aa6.48□□□□□ -1.37
LIMCH1-219ENST00000514096 MPIG6BO95866 241 aa6.48□□□□□ -1.37
LIMCH1-219ENST00000514096 CD74P04233 296 aa6.48□□□□□ -1.37
LIMCH1-219ENST00000514096 ZBTB25P24278 435 aa6.48□□□□□ -1.37
LIMCH1-219ENST00000514096 ZNF133P52736 654 aaPredicted RBP6.48□□□□□ -1.37
LIMCH1-219ENST00000514096 TCTAP57738 103 aa6.48□□□□□ -1.37
LIMCH1-219ENST00000514096 LOXL1Q08397 574 aaPredicted RBP6.48□□□□□ -1.37
LIMCH1-219ENST00000514096 FAM53AQ6NSI3 398 aaPredicted RBP6.48□□□□□ -1.37
LIMCH1-219ENST00000514096 RNASEKQ6P5S7 137 aaKnown RBP6.48□□□□□ -1.37
LIMCH1-219ENST00000514096 ASCL4Q6XD76 172 aa6.48□□□□□ -1.37
LIMCH1-219ENST00000514096 DOK3Q7L591 496 aa6.48□□□□□ -1.37
LIMCH1-219ENST00000514096 TMEM219Q86XT9 240 aa6.48□□□□□ -1.37
LIMCH1-219ENST00000514096 OR4A5Q8NH83 315 aa6.48□□□□□ -1.37
LIMCH1-219ENST00000514096 FAM110AQ9BQ89 295 aa6.48□□□□□ -1.37
LIMCH1-219ENST00000514096 MAP1LC3B2A6NCE7 125 aa6.47□□□□□ -1.37
LIMCH1-219ENST00000514096 ARRDC5A6NEK1 342 aa6.47□□□□□ -1.37
LIMCH1-219ENST00000514096 FOXH1O75593 365 aa6.47□□□□□ -1.37
LIMCH1-219ENST00000514096 PSG2P11465 335 aa6.47□□□□□ -1.37
LIMCH1-219ENST00000514096 OTX1P32242 354 aaPredicted RBP6.47□□□□□ -1.37
LIMCH1-219ENST00000514096 MEF2CQ06413 473 aaPredicted RBP6.47□□□□□ -1.37
LIMCH1-219ENST00000514096 KRTAP1-1Q07627 177 aa6.47□□□□□ -1.37
LIMCH1-219ENST00000514096 HES1Q14469 280 aa6.47□□□□□ -1.37
LIMCH1-219ENST00000514096 MPV17L2Q567V2 206 aa6.47□□□□□ -1.37
LIMCH1-219ENST00000514096 GCSAMLQ5JQS6 135 aa6.47□□□□□ -1.37
LIMCH1-219ENST00000514096 AWAT2Q6E213 333 aa6.47□□□□□ -1.37
LIMCH1-219ENST00000514096 CMTM4Q8IZR5 234 aa6.47□□□□□ -1.37
LIMCH1-219ENST00000514096 MARCH1Q8TCQ1 289 aa6.47□□□□□ -1.37
LIMCH1-219ENST00000514096 POP5Q969H6 163 aaKnown RBP6.47□□□□□ -1.37
LIMCH1-219ENST00000514096 MAP1LC3BQ9GZQ8 125 aa6.47□□□□□ -1.37
LIMCH1-219ENST00000514096 IGKV1-27A0A075B6S5 117 aa6.47□□□□□ -1.37
LIMCH1-219ENST00000514096 TRAV14DV4A0A0A6YYC5 116 aa6.47□□□□□ -1.37
LIMCH1-219ENST00000514096 C7orf71A4D174 169 aa6.47□□□□□ -1.37
LIMCH1-219ENST00000514096 SPINK8P0C7L1 97 aa6.47□□□□□ -1.37
LIMCH1-219ENST00000514096 ATF1P18846 271 aa6.47□□□□□ -1.37
LIMCH1-219ENST00000514096 PRDX2P32119 198 aa6.47□□□□□ -1.37
LIMCH1-219ENST00000514096 ZNF841Q6ZN19 808 aa6.47□□□□□ -1.37
LIMCH1-219ENST00000514096 ZNF418Q8TF45 676 aaPredicted RBP6.47□□□□□ -1.37
LIMCH1-219ENST00000514096 OR5P3Q8WZ94 311 aa6.47□□□□□ -1.37
LIMCH1-219ENST00000514096 A0A1B0GTI1 187 aa6.47□□□□□ -1.37
LIMCH1-219ENST00000514096 TRDV1A0A1B0GX56 115 aa6.47□□□□□ -1.37
LIMCH1-219ENST00000514096 H3BUT2 72 aa6.47□□□□□ -1.37
LIMCH1-219ENST00000514096 MMP23AO75900 390 aa6.47□□□□□ -1.37
LIMCH1-219ENST00000514096 EDN2P20800 178 aa6.47□□□□□ -1.37
LIMCH1-219ENST00000514096 LFNGQ8NES3 379 aa6.47□□□□□ -1.37
LIMCH1-219ENST00000514096 OR5AU1Q8NGC0 362 aa6.47□□□□□ -1.37
LIMCH1-219ENST00000514096 OR5D14Q8NGL3 314 aa6.47□□□□□ -1.37
LIMCH1-219ENST00000514096 NOX4Q9NPH5 578 aa6.47□□□□□ -1.37
LIMCH1-219ENST00000514096 CKLFQ9UBR5 152 aa6.47□□□□□ -1.37
LIMCH1-219ENST00000514096 TRAV25A0A0B4J276 109 aa6.46□□□□□ -1.37
LIMCH1-219ENST00000514096 HRH1P35367 487 aa6.46□□□□□ -1.37
LIMCH1-219ENST00000514096 ZNF260Q3ZCT1 412 aa6.46□□□□□ -1.37
LIMCH1-219ENST00000514096 LCN15Q6UWW0 184 aa6.46□□□□□ -1.37
LIMCH1-219ENST00000514096 COLCA1Q6ZS62 124 aa6.46□□□□□ -1.37
LIMCH1-219ENST00000514096 OR10V1Q8NGI7 309 aa6.46□□□□□ -1.37
LIMCH1-219ENST00000514096 DERL3Q96Q80 235 aa6.46□□□□□ -1.37
LIMCH1-219ENST00000514096 MRPS28Q9Y2Q9 187 aaKnown RBP6.46□□□□□ -1.37
LIMCH1-219ENST00000514096 WSB1Q9Y6I7 421 aa6.46□□□□□ -1.37
LIMCH1-219ENST00000514096 TRBV20-1A0A075B6N2 111 aa6.46□□□□□ -1.38
LIMCH1-219ENST00000514096 TRAV8-7A0A075B6U6 113 aa6.46□□□□□ -1.38
LIMCH1-219ENST00000514096 G3V4G9 280 aa6.46□□□□□ -1.38
LIMCH1-219ENST00000514096 GPR137BO60478 399 aa6.46□□□□□ -1.38
LIMCH1-219ENST00000514096 NDUFB6O95139 128 aa6.46□□□□□ -1.38
LIMCH1-219ENST00000514096 WNT2P09544 360 aa6.46□□□□□ -1.38
LIMCH1-219ENST00000514096 AMY2BP19961 511 aa6.46□□□□□ -1.38
LIMCH1-219ENST00000514096 GLIPR1P48060 266 aa6.46□□□□□ -1.38
LIMCH1-219ENST00000514096 FAM3BP58499 235 aaPredicted RBP6.46□□□□□ -1.38
LIMCH1-219ENST00000514096 KISS1Q15726 138 aa6.46□□□□□ -1.38
LIMCH1-219ENST00000514096 FAM71F2Q6NXP2 309 aa6.46□□□□□ -1.38
LIMCH1-219ENST00000514096 CYB561D1Q8N8Q1 229 aa6.46□□□□□ -1.38
LIMCH1-219ENST00000514096 OR4C16Q8NGL9 310 aa6.46□□□□□ -1.38
LIMCH1-219ENST00000514096 PSMG3Q9BT73 122 aaPredicted RBP6.46□□□□□ -1.38
LIMCH1-219ENST00000514096 GABARAPL1Q9H0R8 117 aa6.46□□□□□ -1.38
LIMCH1-219ENST00000514096 PRR13Q9NZ81 148 aa6.46□□□□□ -1.38
LIMCH1-219ENST00000514096 PKIGQ9Y2B9 76 aa6.46□□□□□ -1.38
LIMCH1-219ENST00000514096 SIGLEC9Q9Y336 463 aa6.46□□□□□ -1.38
LIMCH1-219ENST00000514096 IGKV1-9A0A0C4DH69 117 aa6.46□□□□□ -1.38
LIMCH1-219ENST00000514096 A0A1W2PRX2 142 aa6.46□□□□□ -1.38
LIMCH1-219ENST00000514096 RNF222A6NCQ9 220 aa6.46□□□□□ -1.38
LIMCH1-219ENST00000514096 HOXA3O43365 443 aaPredicted RBP6.46□□□□□ -1.38
LIMCH1-219ENST00000514096 ZNF93P35789 620 aaPredicted RBP6.46□□□□□ -1.38
LIMCH1-219ENST00000514096 SULT1A2P50226 295 aa6.46□□□□□ -1.38
LIMCH1-219ENST00000514096 TAS2R19P59542 299 aa6.46□□□□□ -1.38
LIMCH1-219ENST00000514096 ATP5G2Q06055 141 aa6.46□□□□□ -1.38
LIMCH1-219ENST00000514096 KLF9Q13886 244 aaPredicted RBP6.46□□□□□ -1.38
LIMCH1-219ENST00000514096 SMIM4Q8WVI0 70 aa6.46□□□□□ -1.38
LIMCH1-219ENST00000514096 AQP3Q92482 292 aa6.46□□□□□ -1.38
LIMCH1-219ENST00000514096 LINC00527Q9UJ94 153 aa6.46□□□□□ -1.38
LIMCH1-219ENST00000514096 TRAPPC1Q9Y5R8 145 aa6.46□□□□□ -1.38
LIMCH1-219ENST00000514096 MPC1Q9Y5U8 109 aa6.46□□□□□ -1.38
LIMCH1-219ENST00000514096 KIR2DL5BA0A0G2JN68 375 aa6.45□□□□□ -1.38
LIMCH1-219ENST00000514096 KIR2DL5BA0A0G2JPC4 375 aa6.45□□□□□ -1.38
LIMCH1-219ENST00000514096 FAM181BA6NEQ2 426 aa6.45□□□□□ -1.38
LIMCH1-219ENST00000514096 DEGS1O15121 323 aa6.45□□□□□ -1.38
Retrieved 100 of 20,778 RNA–protein pairs in 61.5 ms