RNA–Protein interactions for RNA: ENST00000460696.1

NPHP4-204, Transcript of nephrocystin 4, humanhuman

TSL 1 (best)

Gene NPHP4, Length 3,967 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP4-204ENST00000460696 CHODLQ9H9P2 273 aa9.61□□□□□ -0.87
NPHP4-204ENST00000460696 SERTM2A0A1B0GWG4 89 aa9.6□□□□□ -0.87
NPHP4-204ENST00000460696 TNFSF13O75888 250 aa9.6□□□□□ -0.87
NPHP4-204ENST00000460696 IMMP2LQ96T52 175 aa9.6□□□□□ -0.87
NPHP4-204ENST00000460696 CHRDL1Q9BU40 450 aa9.6□□□□□ -0.87
NPHP4-204ENST00000460696 MBD3L4A6NDZ8 208 aaPredicted RBP9.6□□□□□ -0.87
NPHP4-204ENST00000460696 MBD3L3A6NE82 208 aaPredicted RBP9.6□□□□□ -0.87
NPHP4-204ENST00000460696 MBD3L5A6NJ08 208 aaPredicted RBP9.6□□□□□ -0.87
NPHP4-204ENST00000460696 C15orf62A8K5M9 175 aa9.6□□□□□ -0.87
NPHP4-204ENST00000460696 VENTXO95231 258 aa9.6□□□□□ -0.87
NPHP4-204ENST00000460696 LMO1P25800 156 aa9.6□□□□□ -0.87
NPHP4-204ENST00000460696 CENPWQ5EE01 88 aa9.6□□□□□ -0.87
NPHP4-204ENST00000460696 C10orf55Q5SWW7 151 aa9.6□□□□□ -0.87
NPHP4-204ENST00000460696 IBA57Q5T440 356 aaKnown RBP9.6□□□□□ -0.87
NPHP4-204ENST00000460696 DUX4L9Q6RFH8 374 aaPredicted RBP9.6□□□□□ -0.87
NPHP4-204ENST00000460696 MBD3L2Q8NHZ7 208 aaPredicted RBP9.6□□□□□ -0.87
NPHP4-204ENST00000460696 FAM222BQ8WU58 562 aa9.6□□□□□ -0.87
NPHP4-204ENST00000460696 PERPQ96FX8 193 aa9.6□□□□□ -0.87
NPHP4-204ENST00000460696 RASL11BQ9BPW5 248 aa9.6□□□□□ -0.87
NPHP4-204ENST00000460696 VAMP8Q9BV40 100 aa9.6□□□□□ -0.87
NPHP4-204ENST00000460696 SSBP3Q9BWW4 388 aaPredicted RBP9.6□□□□□ -0.87
NPHP4-204ENST00000460696 ZNF430Q9H8G1 570 aaPredicted RBP9.6□□□□□ -0.87
NPHP4-204ENST00000460696 PGPA6NDG6 321 aa9.6□□□□□ -0.87
NPHP4-204ENST00000460696 RBFOX2O43251 390 aaKnown RBP eCLIP9.6□□□□□ -0.87
NPHP4-204ENST00000460696 HIST1H1BP16401 226 aaKnown RBP9.6□□□□□ -0.87
NPHP4-204ENST00000460696 PAX6P26367 422 aa9.6□□□□□ -0.87
NPHP4-204ENST00000460696 CD81P60033 236 aa9.6□□□□□ -0.87
NPHP4-204ENST00000460696 MUC15Q8N387 334 aa9.6□□□□□ -0.87
NPHP4-204ENST00000460696 OR2D3Q8NGH3 330 aa9.6□□□□□ -0.87
NPHP4-204ENST00000460696 OR2T6Q8NHC8 308 aa9.6□□□□□ -0.87
NPHP4-204ENST00000460696 GGTLC1Q9BX51 225 aa9.6□□□□□ -0.87
NPHP4-204ENST00000460696 AMMECR1Q9Y4X0 333 aaPredicted RBP9.6□□□□□ -0.87
NPHP4-204ENST00000460696 MMD2Q8IY49 270 aa9.59□□□□□ -0.87
NPHP4-204ENST00000460696 OR4F17Q8NGA8 305 aa9.59□□□□□ -0.87
NPHP4-204ENST00000460696 OSR1Q8TAX0 266 aaPredicted RBP9.59□□□□□ -0.87
NPHP4-204ENST00000460696 TMEM186Q96B77 213 aa9.59□□□□□ -0.87
NPHP4-204ENST00000460696 IFI27L2Q9H2X8 130 aa9.59□□□□□ -0.87
NPHP4-204ENST00000460696 LINC00312Q9Y6C7 94 aa9.59□□□□□ -0.87
NPHP4-204ENST00000460696 GNG7O60262 68 aa9.59□□□□□ -0.87
NPHP4-204ENST00000460696 HYPMO75409 117 aa9.59□□□□□ -0.87
NPHP4-204ENST00000460696 IGKV1D-33P01593 117 aa9.59□□□□□ -0.87
NPHP4-204ENST00000460696 IGKV1-33P01594 117 aa9.59□□□□□ -0.87
NPHP4-204ENST00000460696 CCKARP32238 428 aa9.59□□□□□ -0.87
NPHP4-204ENST00000460696 CEACAM3P40198 252 aa9.59□□□□□ -0.87
NPHP4-204ENST00000460696 ZNF726P1Q15940 193 aa9.59□□□□□ -0.87
NPHP4-204ENST00000460696 SPATA31B1PQ5VZV4 182 aa9.59□□□□□ -0.87
NPHP4-204ENST00000460696 ZNF436-AS1Q8NC38 126 aaPredicted RBP9.59□□□□□ -0.87
NPHP4-204ENST00000460696 WNK1Q9H4A3 2382 aa9.59□□□□□ -0.87
NPHP4-204ENST00000460696 TRAV34A0A0B4J273 112 aa9.59□□□□□ -0.87
NPHP4-204ENST00000460696 PPIAL4CA0A0B4J2A2 164 aa9.59□□□□□ -0.87
NPHP4-204ENST00000460696 UPK2O00526 184 aa9.59□□□□□ -0.87
NPHP4-204ENST00000460696 PPIAL4GP0DN37 164 aa9.59□□□□□ -0.87
NPHP4-204ENST00000460696 TIMP3P35625 211 aa9.59□□□□□ -0.87
NPHP4-204ENST00000460696 RPL11P62913 178 aaKnown RBP9.59□□□□□ -0.87
NPHP4-204ENST00000460696 EFNB3Q15768 340 aa9.59□□□□□ -0.87
NPHP4-204ENST00000460696 WDR73Q6P4I2 378 aa9.59□□□□□ -0.87
NPHP4-204ENST00000460696 VN1R17PQ8TDU5 208 aa9.59□□□□□ -0.87
NPHP4-204ENST00000460696 MRPL18Q9H0U6 180 aaKnown RBP9.59□□□□□ -0.87
NPHP4-204ENST00000460696 RPUSD1Q9UJJ7 312 aaKnown RBP9.59□□□□□ -0.87
NPHP4-204ENST00000460696 PAM16Q9Y3D7 125 aa9.59□□□□□ -0.87
NPHP4-204ENST00000460696 Q6ZS92 163 aa9.58□□□□□ -0.88
NPHP4-204ENST00000460696 TCF23Q7RTU1 214 aa9.58□□□□□ -0.88
NPHP4-204ENST00000460696 SEPSECSQ9HD40 501 aaKnown RBP9.58□□□□□ -0.88
NPHP4-204ENST00000460696 SELENOTP62341 195 aa9.58□□□□□ -0.88
NPHP4-204ENST00000460696 HSPB9Q9BQS6 159 aa9.58□□□□□ -0.88
NPHP4-204ENST00000460696 ELOVL5Q9NYP7 299 aa9.58□□□□□ -0.88
NPHP4-204ENST00000460696 HELZ2Q9BYK8 2649 aaKnown RBP9.58□□□□□ -0.88
NPHP4-204ENST00000460696 C20orf202A1L168 122 aa9.58□□□□□ -0.88
NPHP4-204ENST00000460696 ZNF137PP52743 207 aa9.58□□□□□ -0.88
NPHP4-204ENST00000460696 PKIAP61925 76 aa9.58□□□□□ -0.88
NPHP4-204ENST00000460696 RELBQ01201 579 aa9.58□□□□□ -0.88
NPHP4-204ENST00000460696 MLANAQ16655 118 aa9.58□□□□□ -0.88
NPHP4-204ENST00000460696 NOL4LQ96MY1 436 aaPredicted RBP9.58□□□□□ -0.88
NPHP4-204ENST00000460696 TBX15Q96SF7 602 aa9.58□□□□□ -0.88
NPHP4-204ENST00000460696 IGKV1-16P04430 117 aa9.57□□□□□ -0.88
NPHP4-204ENST00000460696 CSN3P07498 182 aa9.57□□□□□ -0.88
NPHP4-204ENST00000460696 HIST2H2BCQ6DN03 193 aa9.57□□□□□ -0.88
NPHP4-204ENST00000460696 SSX7Q7RTT5 188 aa9.57□□□□□ -0.88
NPHP4-204ENST00000460696 TMEM144Q7Z5S9 345 aa9.57□□□□□ -0.88
NPHP4-204ENST00000460696 TMEM183AQ8IXX5 376 aa9.57□□□□□ -0.88
NPHP4-204ENST00000460696 PNKDQ8N490 385 aa9.57□□□□□ -0.88
NPHP4-204ENST00000460696 OCC1Q8TAD7 63 aa9.57□□□□□ -0.88
NPHP4-204ENST00000460696 ZNF596Q8TC21 504 aa9.57□□□□□ -0.88
NPHP4-204ENST00000460696 C11orf53Q8IXP5 236 aa9.57□□□□□ -0.88
NPHP4-204ENST00000460696 LYPD6BQ8NI32 183 aa9.57□□□□□ -0.88
NPHP4-204ENST00000460696 MGST2Q99735 147 aa9.57□□□□□ -0.88
NPHP4-204ENST00000460696 TMUB1Q9BVT8 246 aa9.57□□□□□ -0.88
NPHP4-204ENST00000460696 AAMDCQ9H7C9 122 aa9.57□□□□□ -0.88
NPHP4-204ENST00000460696 PRRC2AP48634 2157 aaKnown RBP9.57□□□□□ -0.88
NPHP4-204ENST00000460696 P01737 135 aa9.57□□□□□ -0.88
NPHP4-204ENST00000460696 STXBP6Q8NFX7 210 aa9.57□□□□□ -0.88
NPHP4-204ENST00000460696 FBXL15Q9H469 300 aa9.57□□□□□ -0.88
NPHP4-204ENST00000460696 HIF1ANQ9NWT6 349 aa9.57□□□□□ -0.88
NPHP4-204ENST00000460696 MBD3L2BA0A1B0GVZ6 204 aaPredicted RBP9.56□□□□□ -0.88
NPHP4-204ENST00000460696 NDUFA2O43678 99 aa9.56□□□□□ -0.88
NPHP4-204ENST00000460696 SOD3P08294 240 aa9.56□□□□□ -0.88
NPHP4-204ENST00000460696 APOBEC3AP31941 199 aaPredicted RBP9.56□□□□□ -0.88
NPHP4-204ENST00000460696 S4R3C0 116 aa9.56□□□□□ -0.88
NPHP4-204ENST00000460696 A0A0G2JNJ9 132 aa9.56□□□□□ -0.88
NPHP4-204ENST00000460696 ZNF134P52741 427 aa9.56□□□□□ -0.88
Retrieved 100 of 20,778 RNA–protein pairs in 65.1 ms