RNA–Protein interactions for RNA: ENST00000415188.1

USP4-203, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 3 BASIC

Gene USP4, Length 1,454 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-203ENST00000415188 ARL2-SNX15V9GYD0 113 aa12.02□□□□□ -0.48
USP4-203ENST00000415188 ELOA3CA0A087WX78 387 aaPredicted RBP12.02□□□□□ -0.49
USP4-203ENST00000415188 H7BYZ3 331 aa12.02□□□□□ -0.49
USP4-203ENST00000415188 J3QR06 171 aa12.02□□□□□ -0.49
USP4-203ENST00000415188 NDUFB3O43676 98 aa12.02□□□□□ -0.49
USP4-203ENST00000415188 MMP23AO75900 390 aa12.02□□□□□ -0.49
USP4-203ENST00000415188 MT-CO2P00403 227 aa12.02□□□□□ -0.49
USP4-203ENST00000415188 CA2P00918 260 aa12.02□□□□□ -0.49
USP4-203ENST00000415188 B2MP61769 119 aa12.02□□□□□ -0.49
USP4-203ENST00000415188 RHOBP62745 196 aa12.02□□□□□ -0.49
USP4-203ENST00000415188 EFNB3Q15768 340 aa12.02□□□□□ -0.49
USP4-203ENST00000415188 TMEM177Q53S58 311 aa12.02□□□□□ -0.49
USP4-203ENST00000415188 C2orf83Q53S99 150 aa12.02□□□□□ -0.49
USP4-203ENST00000415188 ARSJQ5FYB0 599 aaPredicted RBP12.02□□□□□ -0.49
USP4-203ENST00000415188 MIC13Q5XKP0 118 aa12.02□□□□□ -0.49
USP4-203ENST00000415188 C16orf82Q7Z2V1 217 aa12.02□□□□□ -0.49
USP4-203ENST00000415188 OR1L8Q8NGR8 309 aa12.02□□□□□ -0.49
USP4-203ENST00000415188 TMEM106BQ9NUM4 274 aa12.02□□□□□ -0.49
USP4-203ENST00000415188 DCAF16Q9NXF7 216 aa12.02□□□□□ -0.49
USP4-203ENST00000415188 PFN1P07737 140 aaKnown RBP12.01□□□□□ -0.49
USP4-203ENST00000415188 SRP14P37108 136 aaKnown RBP12.01□□□□□ -0.49
USP4-203ENST00000415188 CDX1P47902 265 aaPredicted RBP12.01□□□□□ -0.49
USP4-203ENST00000415188 OR5AN1Q8NGI8 311 aa12.01□□□□□ -0.49
USP4-203ENST00000415188 GATAD1Q8WUU5 269 aa12.01□□□□□ -0.49
USP4-203ENST00000415188 TMEM186Q96B77 213 aa12.01□□□□□ -0.49
USP4-203ENST00000415188 SLC35E1Q96K37 410 aa12.01□□□□□ -0.49
USP4-203ENST00000415188 SRD5A3Q9H8P0 318 aa12.01□□□□□ -0.49
USP4-203ENST00000415188 H0YJW9 148 aa12□□□□□ -0.49
USP4-203ENST00000415188 PPP1R2P9O14990 202 aa12□□□□□ -0.49
USP4-203ENST00000415188 CLN5O75503 358 aa12□□□□□ -0.49
USP4-203ENST00000415188 C11orf71Q6IPW1 123 aa12□□□□□ -0.49
USP4-203ENST00000415188 TMEM144Q7Z5S9 345 aa12□□□□□ -0.49
USP4-203ENST00000415188 PDPNQ86YL7 162 aa12□□□□□ -0.49
USP4-203ENST00000415188 VSTM2AQ8TAG5 236 aa12□□□□□ -0.49
USP4-203ENST00000415188 PCGF1Q9BSM1 259 aa12□□□□□ -0.49
USP4-203ENST00000415188 C19orf24Q9BVV8 132 aa12□□□□□ -0.49
USP4-203ENST00000415188 DYNLRB1Q9NP97 96 aa12□□□□□ -0.49
USP4-203ENST00000415188 YLPM1P49750 1951 aaKnown RBP11.99□□□□□ -0.49
USP4-203ENST00000415188 A0A087X0M5 115 aa11.99□□□□□ -0.49
USP4-203ENST00000415188 A0A1B0GX30 115 aa11.99□□□□□ -0.49
USP4-203ENST00000415188 HIST1H2BKO60814 126 aa11.99□□□□□ -0.49
USP4-203ENST00000415188 HIST1H2BJP06899 126 aa11.99□□□□□ -0.49
USP4-203ENST00000415188 SAA1P0DJI8 122 aaPredicted RBP11.99□□□□□ -0.49
USP4-203ENST00000415188 USF1P22415 310 aaPredicted RBP11.99□□□□□ -0.49
USP4-203ENST00000415188 HIST1H2BOP23527 126 aa11.99□□□□□ -0.49
USP4-203ENST00000415188 HIST1H2BBP33778 126 aa11.99□□□□□ -0.49
USP4-203ENST00000415188 ZNF137PP52743 207 aa11.99□□□□□ -0.49
USP4-203ENST00000415188 HIST1H2BDP58876 126 aa11.99□□□□□ -0.49
USP4-203ENST00000415188 HIST1H2BCP62807 126 aa11.99□□□□□ -0.49
USP4-203ENST00000415188 PRR20EP86478 221 aa11.99□□□□□ -0.49
USP4-203ENST00000415188 PRR20CP86479 221 aa11.99□□□□□ -0.49
USP4-203ENST00000415188 PRR20DP86480 221 aa11.99□□□□□ -0.49
USP4-203ENST00000415188 PRR20BP86481 221 aa11.99□□□□□ -0.49
USP4-203ENST00000415188 PRR20AP86496 221 aa11.99□□□□□ -0.49
USP4-203ENST00000415188 HIST2H2BEQ16778 126 aa11.99□□□□□ -0.49
USP4-203ENST00000415188 GCSAMLQ5JQS6 135 aa11.99□□□□□ -0.49
USP4-203ENST00000415188 HIST2H2BFQ5QNW6 126 aaPredicted RBP11.99□□□□□ -0.49
USP4-203ENST00000415188 TMEM200BQ69YZ2 307 aa11.99□□□□□ -0.49
USP4-203ENST00000415188 PNKDQ8N490 385 aa11.99□□□□□ -0.49
USP4-203ENST00000415188 STPG3Q8N7X2 389 aa11.99□□□□□ -0.49
USP4-203ENST00000415188 HIST1H2BHQ93079 126 aa11.99□□□□□ -0.49
USP4-203ENST00000415188 C1orf159Q96HA4 380 aa11.99□□□□□ -0.49
USP4-203ENST00000415188 HIST1H2BNQ99877 126 aa11.99□□□□□ -0.49
USP4-203ENST00000415188 HIST1H2BMQ99879 126 aa11.99□□□□□ -0.49
USP4-203ENST00000415188 SSX3Q99909 188 aa11.99□□□□□ -0.49
USP4-203ENST00000415188 MRPL20Q9BYC9 149 aaKnown RBP11.99□□□□□ -0.49
USP4-203ENST00000415188 PATZ1Q9HBE1 687 aaKnown RBP11.99□□□□□ -0.49
USP4-203ENST00000415188 CBLN4Q9NTU7 201 aa11.99□□□□□ -0.49
USP4-203ENST00000415188 SONP18583 2426 aaKnown RBP11.98□□□□□ -0.49
USP4-203ENST00000415188 CR1P17927 2039 aa11.98□□□□□ -0.49
USP4-203ENST00000415188 TRBV23-1A0A0A0MS06 115 aa11.98□□□□□ -0.49
USP4-203ENST00000415188 TEX50A0A1B0GTY4 177 aa11.98□□□□□ -0.49
USP4-203ENST00000415188 A0A1W2PN81 502 aa11.98□□□□□ -0.49
USP4-203ENST00000415188 B9A039 149 aa11.98□□□□□ -0.49
USP4-203ENST00000415188 FSTL3O95633 263 aa11.98□□□□□ -0.49
USP4-203ENST00000415188 TRGC2P03986 189 aa11.98□□□□□ -0.49
USP4-203ENST00000415188 ARL14EPLP0DKL9 152 aa11.98□□□□□ -0.49
USP4-203ENST00000415188 IL3RAP26951 378 aa11.98□□□□□ -0.49
USP4-203ENST00000415188 CHRNA7P36544 502 aa11.98□□□□□ -0.49
USP4-203ENST00000415188 GALR1P47211 349 aa11.98□□□□□ -0.49
USP4-203ENST00000415188 SSX2Q16385 188 aa11.98□□□□□ -0.49
USP4-203ENST00000415188 CST9LP1Q5W188 147 aa11.98□□□□□ -0.49
USP4-203ENST00000415188 MUC15Q8N387 334 aa11.98□□□□□ -0.49
USP4-203ENST00000415188 OR51G1Q8NGK1 321 aa11.98□□□□□ -0.49
USP4-203ENST00000415188 TMEM167AQ8TBQ9 72 aa11.98□□□□□ -0.49
USP4-203ENST00000415188 CACNG8Q8WXS5 425 aa11.98□□□□□ -0.49
USP4-203ENST00000415188 IMMP2LQ96T52 175 aa11.98□□□□□ -0.49
USP4-203ENST00000415188 HINT2Q9BX68 163 aa11.98□□□□□ -0.49
USP4-203ENST00000415188 SLC45A2Q9UMX9 530 aa11.98□□□□□ -0.49
USP4-203ENST00000415188 IGHV4-30-2A0A087WSY4 118 aa11.97□□□□□ -0.49
USP4-203ENST00000415188 PCP4L1A6NKN8 68 aa11.97□□□□□ -0.49
USP4-203ENST00000415188 SRRM4A7MD48 611 aaKnown RBP11.97□□□□□ -0.49
USP4-203ENST00000415188 IGKV1-16P04430 117 aa11.97□□□□□ -0.49
USP4-203ENST00000415188 GCHFRP30047 84 aa11.97□□□□□ -0.49
USP4-203ENST00000415188 APOBEC3AP31941 199 aaPredicted RBP11.97□□□□□ -0.49
USP4-203ENST00000415188 GPX4P36969 197 aaPredicted RBP11.97□□□□□ -0.49
USP4-203ENST00000415188 NDUFA6P56556 154 aa11.97□□□□□ -0.49
USP4-203ENST00000415188 GNB1P62873 340 aa11.97□□□□□ -0.49
USP4-203ENST00000415188 KCNIP4Q6PIL6 250 aa11.97□□□□□ -0.49
USP4-203ENST00000415188 OR4C13Q8NGP0 309 aa11.97□□□□□ -0.49
Retrieved 100 of 20,778 RNA–protein pairs in 81.9 ms