RNA–Protein interactions for RNA: ENST00000359984.12

CLN3-205, Transcript of CLN3, battenin, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CLN3, Length 1,876 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-205ENST00000359984 CTRB1P17538 263 aa15.67■□□□□ 0.1
CLN3-205ENST00000359984 MFAP2P55001 183 aa15.67■□□□□ 0.1
CLN3-205ENST00000359984 HBG1P69891 147 aa15.67■□□□□ 0.1
CLN3-205ENST00000359984 HBG2P69892 147 aa15.67■□□□□ 0.1
CLN3-205ENST00000359984 SLC38A11Q08AI6 406 aa15.67■□□□□ 0.1
CLN3-205ENST00000359984 TOR2AQ5JU69 321 aa15.67■□□□□ 0.1
CLN3-205ENST00000359984 FAM74A1Q5RGS3 127 aa15.67■□□□□ 0.1
CLN3-205ENST00000359984 CTRB2Q6GPI1 263 aa15.67■□□□□ 0.1
CLN3-205ENST00000359984 ESM1Q9NQ30 184 aa15.67■□□□□ 0.1
CLN3-205ENST00000359984 TPT1P13693 172 aaKnown RBP15.66■□□□□ 0.1
CLN3-205ENST00000359984 SLC35E3Q7Z769 313 aa15.66■□□□□ 0.1
CLN3-205ENST00000359984 BAP18Q8IXM2 172 aa15.66■□□□□ 0.1
CLN3-205ENST00000359984 WNT10AQ9GZT5 417 aa15.66■□□□□ 0.1
CLN3-205ENST00000359984 F11RQ9Y624 299 aaKnown RBP15.66■□□□□ 0.1
CLN3-205ENST00000359984 NPIPB5A8MRT5 1133 aa15.65■□□□□ 0.1
CLN3-205ENST00000359984 CRYGCP07315 174 aa15.65■□□□□ 0.1
CLN3-205ENST00000359984 RPL7L1Q6DKI1 246 aaKnown RBP15.65■□□□□ 0.1
CLN3-205ENST00000359984 PVRIGQ6DKI7 326 aa15.65■□□□□ 0.1
CLN3-205ENST00000359984 TTC9CQ8N5M4 171 aa15.65■□□□□ 0.1
CLN3-205ENST00000359984 OR1P1Q8NH06 330 aa15.65■□□□□ 0.1
CLN3-205ENST00000359984 FBXO24O75426 580 aa15.65■□□□□ 0.1
CLN3-205ENST00000359984 CRIP2P52943 208 aaPredicted RBP15.65■□□□□ 0.1
CLN3-205ENST00000359984 ECSCRQ19T08 205 aa15.65■□□□□ 0.1
CLN3-205ENST00000359984 UNQ5815/PRO19632Q6UWF5 114 aa15.65■□□□□ 0.1
CLN3-205ENST00000359984 LILRB2Q8N423 598 aa15.65■□□□□ 0.1
CLN3-205ENST00000359984 OR5T1Q8NG75 326 aa15.65■□□□□ 0.1
CLN3-205ENST00000359984 PINX1Q96BK5 328 aaKnown RBP15.65■□□□□ 0.1
CLN3-205ENST00000359984 DMRT1Q9Y5R6 373 aa15.65■□□□□ 0.1
CLN3-205ENST00000359984 G3V318 75 aa15.64■□□□□ 0.09
CLN3-205ENST00000359984 SCAF4O95104 1147 aaKnown RBP15.64■□□□□ 0.09
CLN3-205ENST00000359984 AKIRIN2Q53H80 203 aa15.64■□□□□ 0.09
CLN3-205ENST00000359984 ATP5SQ99766 215 aa15.64■□□□□ 0.09
CLN3-205ENST00000359984 F8P00451 2351 aa15.64■□□□□ 0.09
CLN3-205ENST00000359984 IGF1P05019 195 aa15.63■□□□□ 0.09
CLN3-205ENST00000359984 ZNF418Q8TF45 676 aaPredicted RBP15.63■□□□□ 0.09
CLN3-205ENST00000359984 NPFFR1Q9GZQ6 430 aa15.63■□□□□ 0.09
CLN3-205ENST00000359984 LINC00527Q9UJ94 153 aa15.63■□□□□ 0.09
CLN3-205ENST00000359984 NSD1Q96L73 2696 aaPredicted RBP15.63■□□□□ 0.09
CLN3-205ENST00000359984 I3L521 148 aa15.63■□□□□ 0.09
CLN3-205ENST00000359984 DEFA4P12838 97 aa15.63■□□□□ 0.09
CLN3-205ENST00000359984 C19orf54Q5BKX5 351 aa15.63■□□□□ 0.09
CLN3-205ENST00000359984 SLC25A24Q6NUK1 477 aa15.63■□□□□ 0.09
CLN3-205ENST00000359984 EIF4E3Q8N5X7 224 aaKnown RBP15.63■□□□□ 0.09
CLN3-205ENST00000359984 RNASEH2CQ8TDP1 164 aaKnown RBP15.63■□□□□ 0.09
CLN3-205ENST00000359984 TMEM68Q96MH6 324 aa15.63■□□□□ 0.09
CLN3-205ENST00000359984 PFDN2Q9UHV9 154 aa15.63■□□□□ 0.09
CLN3-205ENST00000359984 TRAV41A0A0B4J266 112 aa15.62■□□□□ 0.09
CLN3-205ENST00000359984 TRIM77I1YAP6 450 aa15.62■□□□□ 0.09
CLN3-205ENST00000359984 DFFBO76075 338 aa15.62■□□□□ 0.09
CLN3-205ENST00000359984 PRH1P02810 166 aa15.62■□□□□ 0.09
CLN3-205ENST00000359984 MLANAQ16655 118 aa15.62■□□□□ 0.09
CLN3-205ENST00000359984 ATP6V1FQ16864 119 aa15.62■□□□□ 0.09
CLN3-205ENST00000359984 IQCF2Q8IXL9 164 aa15.62■□□□□ 0.09
CLN3-205ENST00000359984 FAM110DQ8TAY7 271 aaPredicted RBP15.62■□□□□ 0.09
CLN3-205ENST00000359984 MISP3Q96FF7 219 aa15.62■□□□□ 0.09
CLN3-205ENST00000359984 PRSS22Q9GZN4 317 aa15.62■□□□□ 0.09
CLN3-205ENST00000359984 CLDN34H7C241 214 aa15.61■□□□□ 0.09
CLN3-205ENST00000359984 DLK1P80370 383 aa15.61■□□□□ 0.09
CLN3-205ENST00000359984 NOL4LQ96MY1 436 aaPredicted RBP15.61■□□□□ 0.09
CLN3-205ENST00000359984 TMEM147Q9BVK8 224 aa15.61■□□□□ 0.09
CLN3-205ENST00000359984 GGACTQ9BVM4 153 aa15.61■□□□□ 0.09
CLN3-205ENST00000359984 FNDC4Q9H6D8 234 aaPredicted RBP15.61■□□□□ 0.09
CLN3-205ENST00000359984 ZNF702PQ9H963 129 aa15.61■□□□□ 0.09
CLN3-205ENST00000359984 BORCS7-ASMTA0A0B4J1R7 106 aa15.61■□□□□ 0.09
CLN3-205ENST00000359984 AP4M1O00189 453 aa15.61■□□□□ 0.09
CLN3-205ENST00000359984 JTBO76095 146 aa15.61■□□□□ 0.09
CLN3-205ENST00000359984 CD69Q07108 199 aa15.61■□□□□ 0.09
CLN3-205ENST00000359984 VWC2Q2TAL6 325 aa15.61■□□□□ 0.09
CLN3-205ENST00000359984 ARSJQ5FYB0 599 aaPredicted RBP15.61■□□□□ 0.09
CLN3-205ENST00000359984 OR1L6Q8NGR2 347 aa15.61■□□□□ 0.09
CLN3-205ENST00000359984 FANCD2OSQ96PS1 177 aa15.61■□□□□ 0.09
CLN3-205ENST00000359984 UQCC1Q9NVA1 299 aa15.61■□□□□ 0.09
CLN3-205ENST00000359984 FAM157CP0CG43 387 aa15.6■□□□□ 0.09
CLN3-205ENST00000359984 HILS1P60008 231 aa15.6■□□□□ 0.09
CLN3-205ENST00000359984 ZNF266Q14584 549 aa15.6■□□□□ 0.09
CLN3-205ENST00000359984 TMEM95Q3KNT9 176 aa15.6■□□□□ 0.09
CLN3-205ENST00000359984 UBAC2Q8NBM4 344 aa15.6■□□□□ 0.09
CLN3-205ENST00000359984 LRRC20Q8TCA0 184 aa15.6■□□□□ 0.09
CLN3-205ENST00000359984 FN1P02751 2386 aaKnown RBP15.6■□□□□ 0.09
CLN3-205ENST00000359984 FAM181BA6NEQ2 426 aa15.59■□□□□ 0.09
CLN3-205ENST00000359984 SOX15O60248 233 aa15.59■□□□□ 0.09
CLN3-205ENST00000359984 CRLF1O75462 422 aa15.59■□□□□ 0.09
CLN3-205ENST00000359984 GPX4P36969 197 aaPredicted RBP15.59■□□□□ 0.09
CLN3-205ENST00000359984 OPRK1P41145 380 aa15.59■□□□□ 0.09
CLN3-205ENST00000359984 EIF5AP63241 154 aaKnown RBP15.59■□□□□ 0.09
CLN3-205ENST00000359984 IGLV11-55A0A075B6I3 123 aa15.59■□□□□ 0.09
CLN3-205ENST00000359984 UBE2L5PA0A1B0GUS4 154 aa15.59■□□□□ 0.09
CLN3-205ENST00000359984 CORTO00230 105 aa15.59■□□□□ 0.09
CLN3-205ENST00000359984 IFNA5P01569 189 aa15.59■□□□□ 0.09
CLN3-205ENST00000359984 TMED6Q8WW62 240 aa15.59■□□□□ 0.09
CLN3-205ENST00000359984 CACNG8Q8WXS5 425 aa15.59■□□□□ 0.09
CLN3-205ENST00000359984 ARV1Q9H2C2 271 aa15.59■□□□□ 0.09
CLN3-205ENST00000359984 IGHV3-48P01763 117 aa15.58■□□□□ 0.08
CLN3-205ENST00000359984 RNASE1P07998 156 aaKnown RBP15.58■□□□□ 0.08
CLN3-205ENST00000359984 SLC16A13Q7RTY0 426 aa15.58■□□□□ 0.08
CLN3-205ENST00000359984 Q8N2B8 174 aa15.58■□□□□ 0.08
CLN3-205ENST00000359984 ZNF580Q9UK33 172 aa15.58■□□□□ 0.08
CLN3-205ENST00000359984 IGHV3-21A0A0B4J1V1 117 aa15.57■□□□□ 0.08
CLN3-205ENST00000359984 SMCO3A2RU48 225 aa15.57■□□□□ 0.08
CLN3-205ENST00000359984 FNDC10F2Z333 226 aa15.57■□□□□ 0.08
Retrieved 100 of 20,778 RNA–protein pairs in 72 ms