RNA–Protein interactions for RNA: ENST00000351842.8

USP4-202, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 1 (best) BASIC

Gene USP4, Length 3,222 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-202ENST00000351842 TNFRSF9Q07011 255 aa7.29□□□□□ -1.24
USP4-202ENST00000351842 VSTM2AQ8TAG5 236 aa7.29□□□□□ -1.24
USP4-202ENST00000351842 NBEAL1Q6ZS30 2694 aa7.29□□□□□ -1.24
USP4-202ENST00000351842 C15orf61A6NNL5 157 aa7.29□□□□□ -1.24
USP4-202ENST00000351842 NUDT19A8MXV4 375 aa7.29□□□□□ -1.24
USP4-202ENST00000351842 K7EPK0 472 aa7.29□□□□□ -1.24
USP4-202ENST00000351842 APOC3P02656 99 aa7.29□□□□□ -1.24
USP4-202ENST00000351842 AMY1AP04745 511 aa7.29□□□□□ -1.24
USP4-202ENST00000351842 NHLH2Q02577 135 aa7.29□□□□□ -1.24
USP4-202ENST00000351842 MMD2Q8IY49 270 aa7.29□□□□□ -1.24
USP4-202ENST00000351842 FAM71E2Q8N5Q1 922 aa7.29□□□□□ -1.24
USP4-202ENST00000351842 PSENENQ9NZ42 101 aa7.29□□□□□ -1.24
USP4-202ENST00000351842 IGHV7-81A0A0B4J1V7 117 aa7.29□□□□□ -1.24
USP4-202ENST00000351842 A0A1B0GW64 132 aa7.29□□□□□ -1.24
USP4-202ENST00000351842 RBFOX2O43251 390 aaKnown RBP eCLIP7.29□□□□□ -1.243e-6■■■■□ 21.5
USP4-202ENST00000351842 OR2J3O76001 311 aa7.29□□□□□ -1.24
USP4-202ENST00000351842 RD3LP0DJH9 198 aa7.29□□□□□ -1.24
USP4-202ENST00000351842 WT1-ASQ06250 92 aa7.29□□□□□ -1.24
USP4-202ENST00000351842 C5orf56Q8N8D9 126 aa7.29□□□□□ -1.24
USP4-202ENST00000351842 OR1L8Q8NGR8 309 aa7.29□□□□□ -1.24
USP4-202ENST00000351842 ACY3Q96HD9 319 aa7.29□□□□□ -1.24
USP4-202ENST00000351842 LY86O95711 162 aa7.28□□□□□ -1.24
USP4-202ENST00000351842 BSCL2Q96G97 398 aaPredicted RBP7.28□□□□□ -1.24
USP4-202ENST00000351842 NARS2Q96I59 477 aaKnown RBP7.28□□□□□ -1.24
USP4-202ENST00000351842 DUX3Q96PT4 197 aa7.28□□□□□ -1.24
USP4-202ENST00000351842 MEGF9Q9H1U4 602 aa7.28□□□□□ -1.24
USP4-202ENST00000351842 HIPK2Q9H2X6 1198 aa7.28□□□□□ -1.24
USP4-202ENST00000351842 A6NDX4 124 aa7.28□□□□□ -1.24
USP4-202ENST00000351842 OOSP1A8MZH6 123 aa7.28□□□□□ -1.24
USP4-202ENST00000351842 OPRK1P41145 380 aa7.28□□□□□ -1.24
USP4-202ENST00000351842 SPCS3P61009 180 aa7.28□□□□□ -1.24
USP4-202ENST00000351842 HSPE1P61604 102 aaKnown RBP7.28□□□□□ -1.24
USP4-202ENST00000351842 CENPVQ7Z7K6 275 aaPredicted RBP7.28□□□□□ -1.24
USP4-202ENST00000351842 PFDN5Q99471 154 aa7.28□□□□□ -1.24
USP4-202ENST00000351842 RNF126Q9BV68 326 aa7.28□□□□□ -1.24
USP4-202ENST00000351842 CYTL1Q9NRR1 136 aa7.28□□□□□ -1.24
USP4-202ENST00000351842 PRNDQ9UKY0 176 aa7.28□□□□□ -1.24
USP4-202ENST00000351842 PKD1L1Q8TDX9 2849 aa7.27□□□□□ -1.24
USP4-202ENST00000351842 A0A1B0GU03 582 aa7.27□□□□□ -1.24
USP4-202ENST00000351842 G0S2P27469 103 aa7.27□□□□□ -1.24
USP4-202ENST00000351842 CYCSP99999 105 aaKnown RBP7.27□□□□□ -1.24
USP4-202ENST00000351842 DEFA6Q01524 100 aa7.27□□□□□ -1.24
USP4-202ENST00000351842 MAJINQ3KP22 176 aa7.27□□□□□ -1.24
USP4-202ENST00000351842 FAM71F2Q6NXP2 309 aa7.27□□□□□ -1.24
USP4-202ENST00000351842 NPFFR1Q9GZQ6 430 aa7.27□□□□□ -1.24
USP4-202ENST00000351842 KANTRA0A1W2PQU2 76 aa7.27□□□□□ -1.25
USP4-202ENST00000351842 TCF21O43680 179 aa7.27□□□□□ -1.25
USP4-202ENST00000351842 CRLF1O75462 422 aa7.27□□□□□ -1.25
USP4-202ENST00000351842 FSHBP01225 129 aa7.27□□□□□ -1.25
USP4-202ENST00000351842 FAM157CP0CG43 387 aa7.27□□□□□ -1.25
USP4-202ENST00000351842 PVALBP20472 110 aaPredicted RBP7.27□□□□□ -1.25
USP4-202ENST00000351842 INO80EQ8NBZ0 244 aaPredicted RBP7.27□□□□□ -1.25
USP4-202ENST00000351842 OR2T6Q8NHC8 308 aa7.27□□□□□ -1.25
USP4-202ENST00000351842 TMEM167AQ8TBQ9 72 aa7.27□□□□□ -1.25
USP4-202ENST00000351842 GNB4Q9HAV0 340 aa7.27□□□□□ -1.25
USP4-202ENST00000351842 BET1LQ9NYM9 111 aa7.27□□□□□ -1.25
USP4-202ENST00000351842 RFNGQ9Y644 331 aa7.27□□□□□ -1.25
USP4-202ENST00000351842 TEX46H3BTG2 121 aa7.27□□□□□ -1.25
USP4-202ENST00000351842 SPDEFO95238 335 aa7.27□□□□□ -1.25
USP4-202ENST00000351842 SNRPCP09234 159 aaKnown RBP7.27□□□□□ -1.25
USP4-202ENST00000351842 COMPP49747 757 aaPredicted RBP7.27□□□□□ -1.25
USP4-202ENST00000351842 SSBP2P81877 361 aaPredicted RBP7.27□□□□□ -1.25
USP4-202ENST00000351842 COTL1Q14019 142 aa7.27□□□□□ -1.25
USP4-202ENST00000351842 C2CD4CQ8TF44 421 aa7.27□□□□□ -1.25
USP4-202ENST00000351842 LSM10Q969L4 123 aaKnown RBP7.27□□□□□ -1.25
USP4-202ENST00000351842 WNT10AQ9GZT5 417 aa7.27□□□□□ -1.25
USP4-202ENST00000351842 KLK15Q9H2R5 256 aa7.27□□□□□ -1.25
USP4-202ENST00000351842 YIF1AO95070 293 aa7.26□□□□□ -1.25
USP4-202ENST00000351842 ERHP84090 104 aaKnown RBP7.26□□□□□ -1.25
USP4-202ENST00000351842 LRTM2Q8N967 370 aa7.26□□□□□ -1.25
USP4-202ENST00000351842 TEX45Q8NA69 505 aa7.26□□□□□ -1.25
USP4-202ENST00000351842 OR5R1Q8NH85 324 aa7.26□□□□□ -1.25
USP4-202ENST00000351842 AQP10Q96PS8 301 aa7.26□□□□□ -1.25
USP4-202ENST00000351842 CARHSP1Q9Y2V2 147 aaKnown RBP7.26□□□□□ -1.25
USP4-202ENST00000351842 S100A8P05109 93 aa7.26□□□□□ -1.25
USP4-202ENST00000351842 OR8U8P0C7N1 319 aa7.26□□□□□ -1.25
USP4-202ENST00000351842 DEFB136Q30KP8 78 aa7.26□□□□□ -1.25
USP4-202ENST00000351842 AARDQ4LEZ3 155 aa7.26□□□□□ -1.25
USP4-202ENST00000351842 PUSL1Q8N0Z8 303 aaKnown RBP7.26□□□□□ -1.25
USP4-202ENST00000351842 SLC24A4Q8NFF2 622 aa7.26□□□□□ -1.25
USP4-202ENST00000351842 OR4D5Q8NGN0 318 aa7.26□□□□□ -1.25
USP4-202ENST00000351842 TMEM14BQ9NUH8 114 aa7.26□□□□□ -1.25
USP4-202ENST00000351842 A0A1B0GV50 99 aa7.25□□□□□ -1.25
USP4-202ENST00000351842 CGB1A6NKQ9 187 aa7.25□□□□□ -1.25
USP4-202ENST00000351842 FAM90A9PA6NNJ1 464 aa7.25□□□□□ -1.25
USP4-202ENST00000351842 MDKP21741 143 aaPredicted RBP7.25□□□□□ -1.25
USP4-202ENST00000351842 NPY1RP25929 384 aa7.25□□□□□ -1.25
USP4-202ENST00000351842 VDAC2P45880 294 aaPredicted RBP7.25□□□□□ -1.25
USP4-202ENST00000351842 TPPP2P59282 170 aa7.25□□□□□ -1.25
USP4-202ENST00000351842 RPL23AP62750 156 aaKnown RBP7.25□□□□□ -1.25
USP4-202ENST00000351842 ETV3LQ6ZN32 361 aa7.25□□□□□ -1.25
USP4-202ENST00000351842 TCTEX1D1Q8N7M0 179 aa7.25□□□□□ -1.25
USP4-202ENST00000351842 HSD17B11Q8NBQ5 300 aa7.25□□□□□ -1.25
USP4-202ENST00000351842 IL22RA2Q969J5 263 aa7.25□□□□□ -1.25
USP4-202ENST00000351842 PRSS22Q9GZN4 317 aa7.25□□□□□ -1.25
USP4-202ENST00000351842 TRAV41A0A0B4J266 112 aa7.25□□□□□ -1.25
USP4-202ENST00000351842 UBE2L5PA0A1B0GUS4 154 aa7.25□□□□□ -1.25
USP4-202ENST00000351842 TMEM238LA0A1B0GVL6 79 aa7.25□□□□□ -1.25
USP4-202ENST00000351842 IGSF23A1L1A6 192 aa7.25□□□□□ -1.25
USP4-202ENST00000351842 SOX15O60248 233 aa7.25□□□□□ -1.25
Retrieved 100 of 20,778 RNA–protein pairs in 182.9 ms