RNA–Protein interactions for RNA: ENST00000323701.10

USP39-201, Transcript of ubiquitin specific peptidase 39, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP39, Length 2,177 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-201ENST00000323701 BRD3OSQ6XYD6 125 aa14.67□□□□□ -0.06
USP39-201ENST00000323701 Q8N6K4 173 aa14.67□□□□□ -0.06
USP39-201ENST00000323701 NPBQ8NG41 125 aa14.67□□□□□ -0.06
USP39-201ENST00000323701 NPFFO15130 113 aa14.67□□□□□ -0.06
USP39-201ENST00000323701 PLGLAQ15195 96 aa14.67□□□□□ -0.06
USP39-201ENST00000323701 TMEM41BQ5BJD5 291 aa14.67□□□□□ -0.06
USP39-201ENST00000323701 FFAR4Q5NUL3 377 aa14.67□□□□□ -0.06
USP39-201ENST00000323701 CCDC144NLQ6NUI1 221 aa14.67□□□□□ -0.06
USP39-201ENST00000323701 FNDC4Q9H6D8 234 aaPredicted RBP14.67□□□□□ -0.06
USP39-201ENST00000323701 TBL2Q9Y4P3 447 aaKnown RBP14.67□□□□□ -0.06
USP39-201ENST00000323701 TEX15Q9BXT5 2789 aa14.66□□□□□ -0.06
USP39-201ENST00000323701 A0A1W2PN81 502 aa14.66□□□□□ -0.06
USP39-201ENST00000323701 HMGB3O15347 200 aaKnown RBP14.66□□□□□ -0.06
USP39-201ENST00000323701 ACTL6BO94805 426 aa14.66□□□□□ -0.06
USP39-201ENST00000323701 NDUFA3O95167 84 aa14.66□□□□□ -0.06
USP39-201ENST00000323701 MSMBP08118 114 aa14.66□□□□□ -0.06
USP39-201ENST00000323701 CHRNA7P36544 502 aa14.66□□□□□ -0.06
USP39-201ENST00000323701 FGF8P55075 233 aaPredicted RBP14.66□□□□□ -0.06
USP39-201ENST00000323701 GAMTQ14353 236 aa14.66□□□□□ -0.06
USP39-201ENST00000323701 MALSU1Q96EH3 234 aa14.66□□□□□ -0.06
USP39-201ENST00000323701 OOSP1A8MZH6 123 aa14.66□□□□□ -0.06
USP39-201ENST00000323701 SNAPINO95295 136 aa14.66□□□□□ -0.06
USP39-201ENST00000323701 AVPP01185 164 aa14.66□□□□□ -0.06
USP39-201ENST00000323701 IGHV4-38-2P0DP08 117 aa14.66□□□□□ -0.06
USP39-201ENST00000323701 LCN15Q6UWW0 184 aa14.66□□□□□ -0.06
USP39-201ENST00000323701 OR2T10Q8NGZ9 312 aa14.66□□□□□ -0.06
USP39-201ENST00000323701 OR2T6Q8NHC8 308 aa14.66□□□□□ -0.06
USP39-201ENST00000323701 SSMEM1Q8WWF3 244 aa14.66□□□□□ -0.06
USP39-201ENST00000323701 SRSF12Q8WXF0 261 aaKnown RBP14.66□□□□□ -0.06
USP39-201ENST00000323701 PSMG3-AS1Q96PY0 264 aa14.66□□□□□ -0.06
USP39-201ENST00000323701 RARRES2Q99969 163 aa14.66□□□□□ -0.06
USP39-201ENST00000323701 GGTLC1Q9BX51 225 aa14.66□□□□□ -0.06
USP39-201ENST00000323701 NPVFQ9HCQ7 196 aa14.66□□□□□ -0.06
USP39-201ENST00000323701 MRPL36Q9P0J6 103 aaKnown RBP14.66□□□□□ -0.06
USP39-201ENST00000323701 DMRT1Q9Y5R6 373 aa14.66□□□□□ -0.06
USP39-201ENST00000323701 TRAV40A0A0B4J280 105 aa14.65□□□□□ -0.06
USP39-201ENST00000323701 YIF1AO95070 293 aa14.65□□□□□ -0.06
USP39-201ENST00000323701 DSCR9P59020 149 aa14.65□□□□□ -0.06
USP39-201ENST00000323701 EBI3Q14213 229 aa14.65□□□□□ -0.06
USP39-201ENST00000323701 MIC13Q5XKP0 118 aa14.65□□□□□ -0.06
USP39-201ENST00000323701 FAM103A1Q9BTL3 118 aaKnown RBP14.65□□□□□ -0.06
USP39-201ENST00000323701 BIN3Q9NQY0 253 aa14.65□□□□□ -0.06
USP39-201ENST00000323701 PDZD2O15018 2839 aa14.65□□□□□ -0.06
USP39-201ENST00000323701 CCDC168Q8NDH2 2452 aa14.65□□□□□ -0.06
USP39-201ENST00000323701 SCAF4O95104 1147 aaKnown RBP14.64□□□□□ -0.07
USP39-201ENST00000323701 DPPA3Q6W0C5 159 aa14.64□□□□□ -0.07
USP39-201ENST00000323701 MXRA5Q9NR99 2828 aa14.64□□□□□ -0.07
USP39-201ENST00000323701 MAS1LP35410 378 aa14.64□□□□□ -0.07
USP39-201ENST00000323701 CD69Q07108 199 aa14.64□□□□□ -0.07
USP39-201ENST00000323701 GUK1Q16774 197 aa14.64□□□□□ -0.07
USP39-201ENST00000323701 C5orf64Q2M2E5 130 aa14.64□□□□□ -0.07
USP39-201ENST00000323701 ZNF709Q8N972 641 aa14.64□□□□□ -0.07
USP39-201ENST00000323701 SLC25A22Q9H936 323 aa14.64□□□□□ -0.07
USP39-201ENST00000323701 HIF1ANQ9NWT6 349 aa14.64□□□□□ -0.07
USP39-201ENST00000323701 CREBBPQ92793 2442 aa14.63□□□□□ -0.07
USP39-201ENST00000323701 UNC79Q9P2D8 2635 aa14.63□□□□□ -0.07
USP39-201ENST00000323701 NCBP2LA6PVI3 153 aaKnown RBP14.63□□□□□ -0.07
USP39-201ENST00000323701 TEPPQ6URK8 271 aa14.63□□□□□ -0.07
USP39-201ENST00000323701 IGHV1-69DA0A0B4J2H0 117 aa14.63□□□□□ -0.07
USP39-201ENST00000323701 IGHV1-69P01742 117 aa14.63□□□□□ -0.07
USP39-201ENST00000323701 SLC25A16P16260 332 aa14.63□□□□□ -0.07
USP39-201ENST00000323701 NDPQ00604 133 aa14.63□□□□□ -0.07
USP39-201ENST00000323701 DEFB113Q30KQ7 82 aa14.63□□□□□ -0.07
USP39-201ENST00000323701 OR10G4Q8NGN3 311 aa14.63□□□□□ -0.07
USP39-201ENST00000323701 OR10G9Q8NGN4 311 aa14.63□□□□□ -0.07
USP39-201ENST00000323701 OR10G7Q8NGN6 311 aa14.63□□□□□ -0.07
USP39-201ENST00000323701 MBD3L1Q8WWY6 194 aa14.63□□□□□ -0.07
USP39-201ENST00000323701 C7orf69Q9H7B7 122 aa14.63□□□□□ -0.07
USP39-201ENST00000323701 TMEM11P17152 192 aa14.62□□□□□ -0.07
USP39-201ENST00000323701 GATA2P23769 480 aaPredicted RBP14.62□□□□□ -0.07
USP39-201ENST00000323701 MEOX2P50222 304 aa14.62□□□□□ -0.07
USP39-201ENST00000323701 ATP5IP56385 69 aaPredicted RBP14.62□□□□□ -0.07
USP39-201ENST00000323701 LURAP1LQ8IV03 231 aa14.62□□□□□ -0.07
USP39-201ENST00000323701 KIAA1456Q9P272 454 aa14.62□□□□□ -0.07
USP39-201ENST00000323701 PXMP4Q9Y6I8 212 aa14.62□□□□□ -0.07
USP39-201ENST00000323701 ITPR3Q14573 2671 aa14.62□□□□□ -0.07
USP39-201ENST00000323701 IGHV3-21A0A0B4J1V1 117 aa14.61□□□□□ -0.07
USP39-201ENST00000323701 B4DSR2 109 aa14.61□□□□□ -0.07
USP39-201ENST00000323701 RNF223E7ERA6 249 aa14.61□□□□□ -0.07
USP39-201ENST00000323701 MPDU1O75352 247 aa14.61□□□□□ -0.07
USP39-201ENST00000323701 CNIH1O95406 144 aa14.61□□□□□ -0.07
USP39-201ENST00000323701 SLC16A13Q7RTY0 426 aa14.61□□□□□ -0.07
USP39-201ENST00000323701 EIF5A2Q9GZV4 153 aaKnown RBP14.61□□□□□ -0.07
USP39-201ENST00000323701 TRAV1-1A0A0B4J248 108 aa14.61□□□□□ -0.07
USP39-201ENST00000323701 A0A0U1RQK1 487 aa14.61□□□□□ -0.07
USP39-201ENST00000323701 C17orf112F2Z3M2 114 aa14.61□□□□□ -0.07
USP39-201ENST00000323701 OPRK1P41145 380 aa14.61□□□□□ -0.07
USP39-201ENST00000323701 FXYD3Q14802 87 aa14.61□□□□□ -0.07
USP39-201ENST00000323701 HAGHQ16775 308 aa14.61□□□□□ -0.07
USP39-201ENST00000323701 KLF17Q5JT82 389 aaPredicted RBP14.61□□□□□ -0.07
USP39-201ENST00000323701 PVRIGQ6DKI7 326 aa14.61□□□□□ -0.07
USP39-201ENST00000323701 TMEM144Q7Z5S9 345 aa14.61□□□□□ -0.07
USP39-201ENST00000323701 ACY3Q96HD9 319 aa14.61□□□□□ -0.07
USP39-201ENST00000323701 TMPRSS5Q9H3S3 457 aa14.61□□□□□ -0.07
USP39-201ENST00000323701 MAP1LC3B2A6NCE7 125 aa14.6□□□□□ -0.07
USP39-201ENST00000323701 PPT1P50897 306 aa14.6□□□□□ -0.07
USP39-201ENST00000323701 CX3CL1P78423 397 aa14.6□□□□□ -0.07
USP39-201ENST00000323701 COMMD1Q8N668 190 aa14.6□□□□□ -0.07
USP39-201ENST00000323701 STPG3Q8N7X2 389 aa14.6□□□□□ -0.07
USP39-201ENST00000323701 ZNF114Q8NC26 417 aa14.6□□□□□ -0.07
Retrieved 100 of 20,778 RNA–protein pairs in 42.6 ms