RNA–Protein interactions for RNA: ENST00000263708.6

PTPN4-201, Transcript of protein tyrosine phosphatase, non-receptor type 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PTPN4, Length 10,300 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN4-201ENST00000263708 DPM2O94777 84 aa9.63□□□□□ -0.87
PTPN4-201ENST00000263708 GDF15Q99988 308 aa9.63□□□□□ -0.87
PTPN4-201ENST00000263708 CGB7P0DN87 165 aa9.63□□□□□ -0.87
PTPN4-201ENST00000263708 TFF3Q07654 80 aa9.63□□□□□ -0.87
PTPN4-201ENST00000263708 C1QAP02745 245 aa9.63□□□□□ -0.87
PTPN4-201ENST00000263708 GBF1Q92538 1859 aa9.62□□□□□ -0.87
PTPN4-201ENST00000263708 PRB4P10163 310 aaPredicted RBP9.62□□□□□ -0.87
PTPN4-201ENST00000263708 IL36BQ9NZH7 164 aa9.62□□□□□ -0.87
PTPN4-201ENST00000263708 ZGRF1Q86YA3 2104 aa9.62□□□□□ -0.87
PTPN4-201ENST00000263708 TMEM30BQ3MIR4 351 aa9.62□□□□□ -0.87
PTPN4-201ENST00000263708 NEU4Q8WWR8 484 aaPredicted RBP9.62□□□□□ -0.87
PTPN4-201ENST00000263708 TRGV11A0A075B6L2 103 aa9.62□□□□□ -0.87
PTPN4-201ENST00000263708 TRAV14DV4A0A0A6YYC5 116 aa9.62□□□□□ -0.87
PTPN4-201ENST00000263708 KBTBD11-OT1A0A1B0GTJ5 212 aa9.62□□□□□ -0.87
PTPN4-201ENST00000263708 ITGBL1O95965 494 aaPredicted RBP9.62□□□□□ -0.87
PTPN4-201ENST00000263708 CIARTQ8N365 385 aaPredicted RBP9.62□□□□□ -0.87
PTPN4-201ENST00000263708 GNG5P63218 68 aa9.62□□□□□ -0.87
PTPN4-201ENST00000263708 LURAP1LQ8IV03 231 aa9.62□□□□□ -0.87
PTPN4-201ENST00000263708 FUT5Q11128 374 aa9.62□□□□□ -0.87
PTPN4-201ENST00000263708 COL22A1Q8NFW1 1626 aaPredicted RBP9.62□□□□□ -0.87
PTPN4-201ENST00000263708 VENTXO95231 258 aa9.62□□□□□ -0.87
PTPN4-201ENST00000263708 TNFRSF6BO95407 300 aa9.62□□□□□ -0.87
PTPN4-201ENST00000263708 PSMG4Q5JS54 123 aa9.62□□□□□ -0.87
PTPN4-201ENST00000263708 GTF3AQ92664 365 aaKnown RBP9.62□□□□□ -0.87
PTPN4-201ENST00000263708 SIRT4Q9Y6E7 314 aaPredicted RBP9.62□□□□□ -0.87
PTPN4-201ENST00000263708 PEBP1P30086 187 aaKnown RBP9.61□□□□□ -0.87
PTPN4-201ENST00000263708 CRYBA2P53672 197 aa9.61□□□□□ -0.87
PTPN4-201ENST00000263708 APCDD1LQ8NCL9 501 aa9.61□□□□□ -0.87
PTPN4-201ENST00000263708 PPIFP30405 207 aaKnown RBP9.61□□□□□ -0.87
PTPN4-201ENST00000263708 CDKN1AP38936 164 aa9.61□□□□□ -0.87
PTPN4-201ENST00000263708 ZFAND6Q6FIF0 208 aa9.61□□□□□ -0.87
PTPN4-201ENST00000263708 DTX1Q86Y01 620 aa9.61□□□□□ -0.87
PTPN4-201ENST00000263708 PAPPAQ13219 1627 aa9.61□□□□□ -0.87
PTPN4-201ENST00000263708 FXYD7P58549 80 aa9.61□□□□□ -0.87
PTPN4-201ENST00000263708 FOXD3Q9UJU5 478 aaPredicted RBP9.61□□□□□ -0.87
PTPN4-201ENST00000263708 TRAV8-1A0A0A6YYK1 113 aa9.61□□□□□ -0.87
PTPN4-201ENST00000263708 GGTLC1Q9BX51 225 aa9.61□□□□□ -0.87
PTPN4-201ENST00000263708 IFI27L2Q9H2X8 130 aa9.61□□□□□ -0.87
PTPN4-201ENST00000263708 A8MWV9 139 aa9.61□□□□□ -0.87
PTPN4-201ENST00000263708 IGHV3-53P01767 116 aa9.61□□□□□ -0.87
PTPN4-201ENST00000263708 ACP7Q6ZNF0 438 aa9.61□□□□□ -0.87
PTPN4-201ENST00000263708 C5orf30Q96GV9 206 aa9.61□□□□□ -0.87
PTPN4-201ENST00000263708 DYSFO75923 2080 aa9.61□□□□□ -0.87
PTPN4-201ENST00000263708 CD24P25063 80 aa9.61□□□□□ -0.87
PTPN4-201ENST00000263708 AQP3Q92482 292 aa9.61□□□□□ -0.87
PTPN4-201ENST00000263708 MYLKQ15746 1914 aa9.61□□□□□ -0.87
PTPN4-201ENST00000263708 DUSP14O95147 198 aaKnown RBP9.6□□□□□ -0.87
PTPN4-201ENST00000263708 TMEM52Q8NDY8 209 aa9.6□□□□□ -0.87
PTPN4-201ENST00000263708 GATAD1Q8WUU5 269 aa9.6□□□□□ -0.87
PTPN4-201ENST00000263708 ZNF501Q96CX3 271 aaPredicted RBP9.6□□□□□ -0.87
PTPN4-201ENST00000263708 LOXL4Q96JB6 756 aa9.6□□□□□ -0.87
PTPN4-201ENST00000263708 GP6Q9HCN6 339 aa9.6□□□□□ -0.87
PTPN4-201ENST00000263708 AHDC1Q5TGY3 1603 aaPredicted RBP9.6□□□□□ -0.87
PTPN4-201ENST00000263708 A0A1B0GW15 77 aa9.6□□□□□ -0.87
PTPN4-201ENST00000263708 C2orf68Q2NKX9 166 aa9.6□□□□□ -0.87
PTPN4-201ENST00000263708 SAXO1Q8IYX7 474 aa9.6□□□□□ -0.87
PTPN4-201ENST00000263708 SLC25A28Q96A46 364 aa9.6□□□□□ -0.87
PTPN4-201ENST00000263708 ASCL2Q99929 193 aa9.6□□□□□ -0.87
PTPN4-201ENST00000263708 FAM201AQ5SY85 155 aa9.6□□□□□ -0.87
PTPN4-201ENST00000263708 COLQQ9Y215 455 aaPredicted RBP9.6□□□□□ -0.87
PTPN4-201ENST00000263708 MED12Q93074 2177 aa9.6□□□□□ -0.87
PTPN4-201ENST00000263708 PEX11BO96011 259 aa9.6□□□□□ -0.87
PTPN4-201ENST00000263708 C5orf66Q9H5L9 145 aa9.6□□□□□ -0.87
PTPN4-201ENST00000263708 Q6AWC8 147 aa9.6□□□□□ -0.87
PTPN4-201ENST00000263708 ERG28Q9UKR5 140 aa9.6□□□□□ -0.87
PTPN4-201ENST00000263708 ZNF114Q8NC26 417 aa9.6□□□□□ -0.87
PTPN4-201ENST00000263708 FDCSPQ8NFU4 85 aa9.6□□□□□ -0.87
PTPN4-201ENST00000263708 SIGMAR1Q99720 223 aa9.6□□□□□ -0.87
PTPN4-201ENST00000263708 TRGV1A0A0A0MS02 117 aa9.6□□□□□ -0.87
PTPN4-201ENST00000263708 CENPVL1A0A0U1RR11 272 aa9.6□□□□□ -0.87
PTPN4-201ENST00000263708 PRTN3P24158 256 aa9.6□□□□□ -0.87
PTPN4-201ENST00000263708 KLF12Q9Y4X4 402 aa9.6□□□□□ -0.87
PTPN4-201ENST00000263708 FSTP19883 344 aa9.59□□□□□ -0.87
PTPN4-201ENST00000263708 RCHY1Q96PM5 261 aa9.59□□□□□ -0.87
PTPN4-201ENST00000263708 FAM90A10PA6NDY2 464 aa9.59□□□□□ -0.87
PTPN4-201ENST00000263708 FAM90A18PA6NE21 464 aa9.59□□□□□ -0.87
PTPN4-201ENST00000263708 FAM90A16PA6NEW6 464 aa9.59□□□□□ -0.87
PTPN4-201ENST00000263708 FAM90A20PA6NIJ5 464 aa9.59□□□□□ -0.87
PTPN4-201ENST00000263708 FAM90A8PA6NJQ4 464 aa9.59□□□□□ -0.87
PTPN4-201ENST00000263708 FAM90A7PA6NKC0 464 aa9.59□□□□□ -0.87
PTPN4-201ENST00000263708 FAM90A22PA8MWA6 464 aa9.59□□□□□ -0.87
PTPN4-201ENST00000263708 FAM90A12PA8MX19 464 aa9.59□□□□□ -0.87
PTPN4-201ENST00000263708 FAM90A5PA8MXJ8 464 aa9.59□□□□□ -0.87
PTPN4-201ENST00000263708 FAM90A23PA8MXZ1 464 aa9.59□□□□□ -0.87
PTPN4-201ENST00000263708 TM4SF5O14894 197 aa9.59□□□□□ -0.87
PTPN4-201ENST00000263708 NDUFS5O43920 106 aa9.59□□□□□ -0.87
PTPN4-201ENST00000263708 FAM90A15PP0C7V4 464 aa9.59□□□□□ -0.87
PTPN4-201ENST00000263708 FAM90A13PP0C7W8 464 aa9.59□□□□□ -0.87
PTPN4-201ENST00000263708 FAM90A14PP0C7W9 464 aa9.59□□□□□ -0.87
PTPN4-201ENST00000263708 FAM90A24PP0C7X0 464 aa9.59□□□□□ -0.87
PTPN4-201ENST00000263708 DANCRP0C864 163 aa9.59□□□□□ -0.87
PTPN4-201ENST00000263708 TMEM91Q6ZNR0 172 aa9.59□□□□□ -0.87
PTPN4-201ENST00000263708 MGST2Q99735 147 aa9.59□□□□□ -0.87
PTPN4-201ENST00000263708 MARF1Q9Y4F3 1742 aaKnown RBP9.59□□□□□ -0.87
PTPN4-201ENST00000263708 CLPSL1A2RUU4 121 aa9.59□□□□□ -0.87
PTPN4-201ENST00000263708 IZUMO1RA6ND01 250 aa9.59□□□□□ -0.87
PTPN4-201ENST00000263708 IGKCP01834 107 aa9.59□□□□□ -0.87
PTPN4-201ENST00000263708 FAM27E3Q08E93 113 aa9.59□□□□□ -0.87
PTPN4-201ENST00000263708 OCIAD2Q56VL3 154 aa9.59□□□□□ -0.87
PTPN4-201ENST00000263708 LHFPL6Q9Y693 200 aa9.59□□□□□ -0.87
Retrieved 100 of 20,778 RNA–protein pairs in 66.4 ms