RNA–Protein interactions for RNA: ENST00000599575.5

SHKBP1-219, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 5

Gene SHKBP1, Length 810 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-219ENST00000599575 SNRPGP15A8MWD9 76 aa12.88□□□□□ -0.35
SHKBP1-219ENST00000599575 NUDT19A8MXV4 375 aa12.88□□□□□ -0.35
SHKBP1-219ENST00000599575 INMT-MINDY4F8WBC2 141 aa12.88□□□□□ -0.35
SHKBP1-219ENST00000599575 APELAP0DMC3 54 aa12.88□□□□□ -0.35
SHKBP1-219ENST00000599575 MYOD1P15172 320 aa12.88□□□□□ -0.35
SHKBP1-219ENST00000599575 ATP5IP56385 69 aaPredicted RBP12.88□□□□□ -0.35
SHKBP1-219ENST00000599575 IZUMO4Q1ZYL8 232 aa12.88□□□□□ -0.35
SHKBP1-219ENST00000599575 NSUN5P1Q3KNT7 163 aa12.88□□□□□ -0.35
SHKBP1-219ENST00000599575 OR2C3Q8N628 320 aa12.88□□□□□ -0.35
SHKBP1-219ENST00000599575 OR10W1Q8NGF6 305 aa12.88□□□□□ -0.35
SHKBP1-219ENST00000599575 OR1P1Q8NH06 330 aa12.88□□□□□ -0.35
SHKBP1-219ENST00000599575 PRR13Q9NZ81 148 aa12.88□□□□□ -0.35
SHKBP1-219ENST00000599575 HSPB7Q9UBY9 170 aa12.88□□□□□ -0.35
SHKBP1-219ENST00000599575 F11RQ9Y624 299 aaKnown RBP12.88□□□□□ -0.35
SHKBP1-219ENST00000599575 PITX3O75364 302 aa12.87□□□□□ -0.35
SHKBP1-219ENST00000599575 SNCAP37840 140 aa12.87□□□□□ -0.35
SHKBP1-219ENST00000599575 SUB1P53999 127 aaKnown RBP eCLIP12.87□□□□□ -0.35
SHKBP1-219ENST00000599575 KLHL30-AS1Q8NEE0 82 aa12.87□□□□□ -0.35
SHKBP1-219ENST00000599575 MS4A10Q96PG2 267 aa12.87□□□□□ -0.35
SHKBP1-219ENST00000599575 ATP6V0BQ99437 205 aa12.87□□□□□ -0.35
SHKBP1-219ENST00000599575 IGLV11-55A0A075B6I3 123 aa12.86□□□□□ -0.35
SHKBP1-219ENST00000599575 I3L521 148 aa12.86□□□□□ -0.35
SHKBP1-219ENST00000599575 HOXB5P09067 269 aa12.86□□□□□ -0.35
SHKBP1-219ENST00000599575 LGALS1P09382 135 aaKnown RBP12.86□□□□□ -0.35
SHKBP1-219ENST00000599575 MYCNOSP40205 109 aa12.86□□□□□ -0.35
SHKBP1-219ENST00000599575 RHOGP84095 191 aa12.86□□□□□ -0.35
SHKBP1-219ENST00000599575 ATP5G2Q06055 141 aa12.86□□□□□ -0.35
SHKBP1-219ENST00000599575 TNFRSF9Q07011 255 aa12.86□□□□□ -0.35
SHKBP1-219ENST00000599575 GGNBP1Q5YKI7 109 aa12.86□□□□□ -0.35
SHKBP1-219ENST00000599575 NOXA1Q86UR1 476 aa12.86□□□□□ -0.35
SHKBP1-219ENST00000599575 C12orf45Q8N5I9 185 aaPredicted RBP12.86□□□□□ -0.35
SHKBP1-219ENST00000599575 OR1S1Q8NH92 325 aa12.86□□□□□ -0.35
SHKBP1-219ENST00000599575 CXorf58Q96LI9 332 aa12.86□□□□□ -0.35
SHKBP1-219ENST00000599575 FANCD2OSQ96PS1 177 aa12.86□□□□□ -0.35
SHKBP1-219ENST00000599575 CORTO00230 105 aa12.85□□□□□ -0.35
SHKBP1-219ENST00000599575 MED6O75586 246 aa12.85□□□□□ -0.35
SHKBP1-219ENST00000599575 HTR2BP41595 481 aa12.85□□□□□ -0.35
SHKBP1-219ENST00000599575 HOXA1P49639 335 aaPredicted RBP12.85□□□□□ -0.35
SHKBP1-219ENST00000599575 RGS21Q2M5E4 152 aa12.85□□□□□ -0.35
SHKBP1-219ENST00000599575 ZNF343Q6P1L6 599 aa12.85□□□□□ -0.35
SHKBP1-219ENST00000599575 LCNL1Q6ZST4 164 aa12.85□□□□□ -0.35
SHKBP1-219ENST00000599575 HIPK2Q9H2X6 1198 aa12.85□□□□□ -0.35
SHKBP1-219ENST00000599575 TET2Q6N021 2002 aaPredicted RBP12.84□□□□□ -0.35
SHKBP1-219ENST00000599575 VWFP04275 2813 aa12.84□□□□□ -0.35
SHKBP1-219ENST00000599575 A0A1W2PRX2 142 aa12.84□□□□□ -0.35
SHKBP1-219ENST00000599575 C15orf32Q32M92 178 aa12.84□□□□□ -0.35
SHKBP1-219ENST00000599575 OR52B4Q8NGK2 314 aa12.84□□□□□ -0.35
SHKBP1-219ENST00000599575 VN1R17PQ8TDU5 208 aa12.84□□□□□ -0.35
SHKBP1-219ENST00000599575 CIB3Q96Q77 187 aaPredicted RBP12.84□□□□□ -0.35
SHKBP1-219ENST00000599575 P2RX4Q99571 388 aa12.84□□□□□ -0.35
SHKBP1-219ENST00000599575 RANGRFQ9HD47 186 aaPredicted RBP12.84□□□□□ -0.35
SHKBP1-219ENST00000599575 HEYLQ9NQ87 328 aaPredicted RBP12.84□□□□□ -0.35
SHKBP1-219ENST00000599575 FBXL7Q9UJT9 491 aa12.84□□□□□ -0.35
SHKBP1-219ENST00000599575 U3KQ87 197 aa12.84□□□□□ -0.35
SHKBP1-219ENST00000599575 TRBV7-1A0A0A6YYK4 115 aa12.83□□□□□ -0.36
SHKBP1-219ENST00000599575 CEBPZOSA8MTT3 80 aa12.83□□□□□ -0.36
SHKBP1-219ENST00000599575 CCL24O00175 119 aa12.83□□□□□ -0.36
SHKBP1-219ENST00000599575 ADAP1O75689 374 aa12.83□□□□□ -0.36
SHKBP1-219ENST00000599575 PF4P02776 101 aa12.83□□□□□ -0.36
SHKBP1-219ENST00000599575 REG1AP05451 166 aa12.83□□□□□ -0.36
SHKBP1-219ENST00000599575 FHL3Q13643 280 aa12.83□□□□□ -0.36
SHKBP1-219ENST00000599575 BSXQ3C1V8 233 aa12.83□□□□□ -0.36
SHKBP1-219ENST00000599575 PVRIGQ6DKI7 326 aa12.83□□□□□ -0.36
SHKBP1-219ENST00000599575 C8orf86Q6ZUL3 223 aa12.83□□□□□ -0.36
SHKBP1-219ENST00000599575 SEC22CQ9BRL7 303 aa12.83□□□□□ -0.36
SHKBP1-219ENST00000599575 GNB4Q9HAV0 340 aa12.83□□□□□ -0.36
SHKBP1-219ENST00000599575 OR2J3O76001 311 aa12.82□□□□□ -0.36
SHKBP1-219ENST00000599575 PRH1P02810 166 aa12.82□□□□□ -0.36
SHKBP1-219ENST00000599575 HSPB1P04792 205 aaKnown RBP12.82□□□□□ -0.36
SHKBP1-219ENST00000599575 OR8U8P0C7N1 319 aa12.82□□□□□ -0.36
SHKBP1-219ENST00000599575 ID3Q02535 119 aa12.82□□□□□ -0.36
SHKBP1-219ENST00000599575 ZNF616Q08AN1 781 aa12.82□□□□□ -0.36
SHKBP1-219ENST00000599575 SLC25A24Q6NUK1 477 aa12.82□□□□□ -0.36
SHKBP1-219ENST00000599575 WFDC9Q8NEX5 89 aa12.82□□□□□ -0.36
SHKBP1-219ENST00000599575 OR1N2Q8NGR9 330 aa12.82□□□□□ -0.36
SHKBP1-219ENST00000599575 DTD1Q8TEA8 209 aa12.82□□□□□ -0.36
SHKBP1-219ENST00000599575 DPF1Q92782 380 aa12.82□□□□□ -0.36
SHKBP1-219ENST00000599575 EEF1AKMT3Q96AZ1 226 aa12.82□□□□□ -0.36
SHKBP1-219ENST00000599575 GAR1Q9NY12 217 aaKnown RBP12.82□□□□□ -0.36
SHKBP1-219ENST00000599575 PKD1L1Q8TDX9 2849 aa12.81□□□□□ -0.36
SHKBP1-219ENST00000599575 RBM14-RBM4A0A0A0MSL8 147 aaKnown RBP12.81□□□□□ -0.36
SHKBP1-219ENST00000599575 TSPAN15O95858 294 aa12.81□□□□□ -0.36
SHKBP1-219ENST00000599575 ZP3P21754 424 aa12.81□□□□□ -0.36
SHKBP1-219ENST00000599575 RPP30P78346 268 aaKnown RBP12.81□□□□□ -0.36
SHKBP1-219ENST00000599575 EXOSC2Q13868 293 aaKnown RBP12.81□□□□□ -0.36
SHKBP1-219ENST00000599575 IAH1Q2TAA2 248 aaPredicted RBP12.81□□□□□ -0.36
SHKBP1-219ENST00000599575 C2orf83Q53S99 150 aa12.81□□□□□ -0.36
SHKBP1-219ENST00000599575 TREML4Q6UXN2 200 aa12.81□□□□□ -0.36
SHKBP1-219ENST00000599575 OR11H1Q8NG94 326 aa12.81□□□□□ -0.36
SHKBP1-219ENST00000599575 RAX2Q96IS3 184 aa12.81□□□□□ -0.36
SHKBP1-219ENST00000599575 PEF1Q9UBV8 284 aaKnown RBP12.81□□□□□ -0.36
SHKBP1-219ENST00000599575 C7orf66A4D0T2 115 aa12.8□□□□□ -0.36
SHKBP1-219ENST00000599575 LINC01619G3V211 115 aa12.8□□□□□ -0.36
SHKBP1-219ENST00000599575 SYNGR2O43760 224 aa12.8□□□□□ -0.36
SHKBP1-219ENST00000599575 NDUFB8O95169 186 aa12.8□□□□□ -0.36
SHKBP1-219ENST00000599575 RNASE2P10153 161 aaKnown RBP12.8□□□□□ -0.36
SHKBP1-219ENST00000599575 NKX2-1P43699 371 aaPredicted RBP12.8□□□□□ -0.36
SHKBP1-219ENST00000599575 UXS1Q8NBZ7 420 aa12.8□□□□□ -0.36
SHKBP1-219ENST00000599575 SLC24A4Q8NFF2 622 aa12.8□□□□□ -0.36
SHKBP1-219ENST00000599575 OR4D5Q8NGN0 318 aa12.8□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 64 ms