RNA–Protein interactions for RNA: ENST00000574029.5

VPS53-216, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 4 BASIC

Gene VPS53, Length 585 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-216ENST00000574029 NDUFA4O00483 81 aa15.6■□□□□ 0.09
VPS53-216ENST00000574029 FCER2P06734 321 aa15.6■□□□□ 0.09
VPS53-216ENST00000574029 RPA2P15927 270 aa15.6■□□□□ 0.09
VPS53-216ENST00000574029 MFAP2P55001 183 aa15.6■□□□□ 0.09
VPS53-216ENST00000574029 AADACL3Q5VUY0 350 aa15.6■□□□□ 0.09
VPS53-216ENST00000574029 SLC25A24Q6NUK1 477 aa15.6■□□□□ 0.09
VPS53-216ENST00000574029 SPSB3Q6PJ21 355 aa15.6■□□□□ 0.09
VPS53-216ENST00000574029 STPG3Q8N7X2 389 aa15.6■□□□□ 0.09
VPS53-216ENST00000574029 SCPEP1Q9HB40 452 aa15.6■□□□□ 0.09
VPS53-216ENST00000574029 CCDC59Q9P031 241 aaKnown RBP15.6■□□□□ 0.09
VPS53-216ENST00000574029 K7EMT4 169 aa15.59■□□□□ 0.09
VPS53-216ENST00000574029 NOL3O60936 208 aaKnown RBP15.59■□□□□ 0.09
VPS53-216ENST00000574029 GNRHRP30968 328 aa15.59■□□□□ 0.09
VPS53-216ENST00000574029 TMEM17Q86X19 198 aa15.59■□□□□ 0.09
VPS53-216ENST00000574029 OR1L8Q8NGR8 309 aa15.59■□□□□ 0.09
VPS53-216ENST00000574029 GPX8Q8TED1 209 aa15.59■□□□□ 0.09
VPS53-216ENST00000574029 BORCS5Q969J3 196 aa15.59■□□□□ 0.09
VPS53-216ENST00000574029 CHRDL1Q9BU40 450 aa15.59■□□□□ 0.09
VPS53-216ENST00000574029 NDUFA4L2Q9NRX3 87 aa15.59■□□□□ 0.09
VPS53-216ENST00000574029 F11RQ9Y624 299 aaKnown RBP15.59■□□□□ 0.09
VPS53-216ENST00000574029 OR4C46A6NHA9 309 aa15.58■□□□□ 0.08
VPS53-216ENST00000574029 MARCH11A6NNE9 402 aa15.58■□□□□ 0.08
VPS53-216ENST00000574029 FAM25AB3EWG3 89 aa15.58■□□□□ 0.08
VPS53-216ENST00000574029 FAM25CB3EWG5 89 aa15.58■□□□□ 0.08
VPS53-216ENST00000574029 FAM25GB3EWG6 89 aa15.58■□□□□ 0.08
VPS53-216ENST00000574029 F8W735 103 aaPredicted RBP15.58■□□□□ 0.08
VPS53-216ENST00000574029 ERVK-16P61578 105 aa15.58■□□□□ 0.08
VPS53-216ENST00000574029 CADM3Q8N126 398 aa15.58■□□□□ 0.08
VPS53-216ENST00000574029 SCARB1Q8WTV0 552 aa15.58■□□□□ 0.08
VPS53-216ENST00000574029 MIXL1Q9H2W2 232 aa15.58■□□□□ 0.08
VPS53-216ENST00000574029 IFT46Q9NQC8 304 aa15.58■□□□□ 0.08
VPS53-216ENST00000574029 C21orf62Q9NYP8 219 aa15.58■□□□□ 0.08
VPS53-216ENST00000574029 KLK5Q9Y337 293 aaPredicted RBP15.58■□□□□ 0.08
VPS53-216ENST00000574029 MEIS3P1A6NDR6 274 aa15.57■□□□□ 0.08
VPS53-216ENST00000574029 F2RP25116 425 aa15.57■□□□□ 0.08
VPS53-216ENST00000574029 ADMP35318 185 aa15.57■□□□□ 0.08
VPS53-216ENST00000574029 LSM10Q969L4 123 aaKnown RBP15.57■□□□□ 0.08
VPS53-216ENST00000574029 GALNT14Q96FL9 552 aa15.57■□□□□ 0.08
VPS53-216ENST00000574029 C20orf24Q9BUV8 137 aa15.57■□□□□ 0.08
VPS53-216ENST00000574029 IGHV3-21A0A0B4J1V1 117 aa15.56■□□□□ 0.08
VPS53-216ENST00000574029 K7EIM0 57 aa15.56■□□□□ 0.08
VPS53-216ENST00000574029 CTDSP2O14595 271 aa15.56■□□□□ 0.08
VPS53-216ENST00000574029 CTSDP07339 412 aaPredicted RBP15.56■□□□□ 0.08
VPS53-216ENST00000574029 RPL35AP18077 110 aaKnown RBP15.56■□□□□ 0.08
VPS53-216ENST00000574029 HERV-K104P61576 105 aa15.56■□□□□ 0.08
VPS53-216ENST00000574029 DHRS11Q6UWP2 260 aa15.56■□□□□ 0.08
VPS53-216ENST00000574029 LYSMD2Q8IV50 215 aa15.56■□□□□ 0.08
VPS53-216ENST00000574029 TMEM217Q8N7C4 229 aa15.56■□□□□ 0.08
VPS53-216ENST00000574029 C15orf40Q8WUR7 153 aa15.56■□□□□ 0.08
VPS53-216ENST00000574029 SLIRPQ9GZT3 109 aaKnown RBP15.56■□□□□ 0.08
VPS53-216ENST00000574029 RBM38Q9H0Z9 239 aaKnown RBP15.56■□□□□ 0.08
VPS53-216ENST00000574029 MAP6D1Q9H9H5 199 aa15.56■□□□□ 0.08
VPS53-216ENST00000574029 C15orf62A8K5M9 175 aa15.55■□□□□ 0.08
VPS53-216ENST00000574029 ZNF701M0R085 212 aaPredicted RBP15.55■□□□□ 0.08
VPS53-216ENST00000574029 PGLYRP1O75594 196 aaPredicted RBP15.55■□□□□ 0.08
VPS53-216ENST00000574029 RLN1P04808 185 aa15.55■□□□□ 0.08
VPS53-216ENST00000574029 LPAR6P43657 344 aa15.55■□□□□ 0.08
VPS53-216ENST00000574029 SNX29P2Q8IUI4 249 aa15.55■□□□□ 0.08
VPS53-216ENST00000574029 MOB3AQ96BX8 217 aa15.55■□□□□ 0.08
VPS53-216ENST00000574029 ZNF414Q96IQ9 312 aa15.55■□□□□ 0.08
VPS53-216ENST00000574029 HINT2Q9BX68 163 aa15.55■□□□□ 0.08
VPS53-216ENST00000574029 EHFQ9NZC4 300 aa15.55■□□□□ 0.08
VPS53-216ENST00000574029 EXTL2Q9UBQ6 330 aa15.55■□□□□ 0.08
VPS53-216ENST00000574029 SMPXQ9UHP9 88 aa15.55■□□□□ 0.08
VPS53-216ENST00000574029 OR51B2Q9Y5P1 312 aa15.55■□□□□ 0.08
VPS53-216ENST00000574029 IGHV3OR16-8A0A075B7F1 116 aa15.54■□□□□ 0.08
VPS53-216ENST00000574029 RGS5O15539 181 aa15.54■□□□□ 0.08
VPS53-216ENST00000574029 ZNF207O43670 478 aaKnown RBP15.54■□□□□ 0.08
VPS53-216ENST00000574029 KRASP01116 189 aa15.54■□□□□ 0.08
VPS53-216ENST00000574029 TAS2R46P59540 309 aa15.54■□□□□ 0.08
VPS53-216ENST00000574029 UBAC2Q8NBM4 344 aa15.54■□□□□ 0.08
VPS53-216ENST00000574029 FCAMRQ8WWV6 532 aa15.54■□□□□ 0.08
VPS53-216ENST00000574029 DGCR14Q96DF8 476 aaKnown RBP15.54■□□□□ 0.08
VPS53-216ENST00000574029 ABHD1Q96SE0 405 aa15.54■□□□□ 0.08
VPS53-216ENST00000574029 NXF2Q9GZY0 626 aaKnown RBP15.54■□□□□ 0.08
VPS53-216ENST00000574029 NSG2Q9Y328 171 aa15.54■□□□□ 0.08
VPS53-216ENST00000574029 SNAPC5O75971 98 aa15.53■□□□□ 0.08
VPS53-216ENST00000574029 CTSGP08311 255 aa15.53■□□□□ 0.08
VPS53-216ENST00000574029 FCGR2BP31994 310 aaPredicted RBP15.53■□□□□ 0.08
VPS53-216ENST00000574029 G6PCP35575 357 aa15.53■□□□□ 0.08
VPS53-216ENST00000574029 RFX2P48378 723 aa15.53■□□□□ 0.08
VPS53-216ENST00000574029 Q56UQ5 140 aa15.53■□□□□ 0.08
VPS53-216ENST00000574029 OR5B3Q8NH48 314 aa15.53■□□□□ 0.08
VPS53-216ENST00000574029 ZNF2Q9BSG1 426 aaPredicted RBP15.53■□□□□ 0.08
VPS53-216ENST00000574029 RCVRNP35243 200 aa15.52■□□□□ 0.08
VPS53-216ENST00000574029 APRG1Q8IVJ8 170 aa15.52■□□□□ 0.08
VPS53-216ENST00000574029 RPP25LQ8N5L8 163 aaKnown RBP15.52■□□□□ 0.08
VPS53-216ENST00000574029 OR5H2Q8NGV7 314 aa15.52■□□□□ 0.08
VPS53-216ENST00000574029 PHLDA1Q8WV24 401 aaPredicted RBP15.52■□□□□ 0.08
VPS53-216ENST00000574029 TMEM56Q96MV1 263 aa15.52■□□□□ 0.08
VPS53-216ENST00000574029 RNF2Q99496 336 aa15.52■□□□□ 0.08
VPS53-216ENST00000574029 FKBP11Q9NYL4 201 aa15.52■□□□□ 0.08
VPS53-216ENST00000574029 RABL2AQ9UBK7 228 aaPredicted RBP15.52■□□□□ 0.08
VPS53-216ENST00000574029 RSL24D1Q9UHA3 163 aaKnown RBP15.52■□□□□ 0.08
VPS53-216ENST00000574029 PRNDQ9UKY0 176 aa15.52■□□□□ 0.08
VPS53-216ENST00000574029 RABL2BQ9UNT1 228 aa15.52■□□□□ 0.08
VPS53-216ENST00000574029 IGHV7-4-1A0A0J9YVY3 117 aa15.51■□□□□ 0.07
VPS53-216ENST00000574029 CHEK1O14757 476 aa15.51■□□□□ 0.07
VPS53-216ENST00000574029 PMP2P02689 132 aa15.51■□□□□ 0.07
VPS53-216ENST00000574029 CMC4P56277 68 aaPredicted RBP15.51■□□□□ 0.07
Retrieved 100 of 20,778 RNA–protein pairs in 40.6 ms