RNA–Protein interactions for RNA: ENST00000564091.6

CLN3-211, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 790 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-211ENST00000564091 CBX5P45973 191 aa12.44□□□□□ -0.42
CLN3-211ENST00000564091 DHRS11Q6UWP2 260 aa12.44□□□□□ -0.42
CLN3-211ENST00000564091 GALNT14Q96FL9 552 aa12.44□□□□□ -0.42
CLN3-211ENST00000564091 ZNF414Q96IQ9 312 aa12.44□□□□□ -0.42
CLN3-211ENST00000564091 RNF2Q99496 336 aa12.44□□□□□ -0.42
CLN3-211ENST00000564091 ZNF2Q9BSG1 426 aaPredicted RBP12.44□□□□□ -0.42
CLN3-211ENST00000564091 KRTAP17-1Q9BYP8 105 aa12.44□□□□□ -0.42
CLN3-211ENST00000564091 IGHV3-49A0A0A0MS15 119 aa12.43□□□□□ -0.42
CLN3-211ENST00000564091 DBX1A6NMT0 343 aa12.43□□□□□ -0.42
CLN3-211ENST00000564091 DEDDO75618 318 aa12.43□□□□□ -0.42
CLN3-211ENST00000564091 SNAPC5O75971 98 aa12.43□□□□□ -0.42
CLN3-211ENST00000564091 PMP2P02689 132 aa12.43□□□□□ -0.42
CLN3-211ENST00000564091 CTSGP08311 255 aa12.43□□□□□ -0.42
CLN3-211ENST00000564091 ATF4P18848 351 aaPredicted RBP12.43□□□□□ -0.42
CLN3-211ENST00000564091 TFPI2P48307 235 aa12.43□□□□□ -0.42
CLN3-211ENST00000564091 TMEM217Q8N7C4 229 aa12.43□□□□□ -0.42
CLN3-211ENST00000564091 PHLDA1Q8WV24 401 aaPredicted RBP12.43□□□□□ -0.42
CLN3-211ENST00000564091 MOB3AQ96BX8 217 aa12.43□□□□□ -0.42
CLN3-211ENST00000564091 DGCR14Q96DF8 476 aaKnown RBP12.43□□□□□ -0.42
CLN3-211ENST00000564091 RHPN1-AS1Q9BWJ2 59 aa12.43□□□□□ -0.42
CLN3-211ENST00000564091 IFT46Q9NQC8 304 aa12.43□□□□□ -0.42
CLN3-211ENST00000564091 SMPXQ9UHP9 88 aa12.43□□□□□ -0.42
CLN3-211ENST00000564091 IGKV3-7A0A075B6H7 116 aa12.42□□□□□ -0.42
CLN3-211ENST00000564091 C15orf62A8K5M9 175 aa12.42□□□□□ -0.42
CLN3-211ENST00000564091 XRCC3O43542 346 aa12.42□□□□□ -0.42
CLN3-211ENST00000564091 YIF1AO95070 293 aa12.42□□□□□ -0.42
CLN3-211ENST00000564091 BORCS5Q969J3 196 aa12.42□□□□□ -0.42
CLN3-211ENST00000564091 ATP6V0BQ99437 205 aa12.42□□□□□ -0.42
CLN3-211ENST00000564091 IGHV3OR16-13A0A075B7E8 117 aa12.41□□□□□ -0.42
CLN3-211ENST00000564091 IGHV3-74A0A0B4J1X5 117 aa12.41□□□□□ -0.42
CLN3-211ENST00000564091 CHEK1O14757 476 aa12.41□□□□□ -0.42
CLN3-211ENST00000564091 TSPAN14Q8NG11 270 aa12.41□□□□□ -0.42
CLN3-211ENST00000564091 SLC25A46Q96AG3 418 aa12.41□□□□□ -0.42
CLN3-211ENST00000564091 CSTL1Q9H114 145 aa12.41□□□□□ -0.42
CLN3-211ENST00000564091 PRNDQ9UKY0 176 aa12.41□□□□□ -0.42
CLN3-211ENST00000564091 HECTD4Q9Y4D8 3996 aa12.4□□□□□ -0.42
CLN3-211ENST00000564091 IGHV7-4-1A0A0J9YVY3 117 aa12.4□□□□□ -0.42
CLN3-211ENST00000564091 IGHV3-48P01763 117 aa12.4□□□□□ -0.42
CLN3-211ENST00000564091 TGFBR1P36897 503 aa12.4□□□□□ -0.42
CLN3-211ENST00000564091 NEDD8Q15843 81 aa12.4□□□□□ -0.42
CLN3-211ENST00000564091 CMTM1Q8IZ96 169 aa12.4□□□□□ -0.42
CLN3-211ENST00000564091 GBGT1Q8N5D6 347 aa12.4□□□□□ -0.42
CLN3-211ENST00000564091 TMEM116Q8NCL8 245 aa12.4□□□□□ -0.42
CLN3-211ENST00000564091 OR5H2Q8NGV7 314 aa12.4□□□□□ -0.42
CLN3-211ENST00000564091 OR1P1Q8NH06 330 aa12.4□□□□□ -0.42
CLN3-211ENST00000564091 MISP3Q96FF7 219 aa12.4□□□□□ -0.42
CLN3-211ENST00000564091 S100A16Q96FQ6 103 aaKnown RBP12.4□□□□□ -0.42
CLN3-211ENST00000564091 TMEM56Q96MV1 263 aa12.4□□□□□ -0.42
CLN3-211ENST00000564091 YTHDF1Q9BYJ9 559 aaKnown RBP12.4□□□□□ -0.42
CLN3-211ENST00000564091 C6orf62Q9GZU0 229 aaPredicted RBP12.4□□□□□ -0.42
CLN3-211ENST00000564091 FXYD6Q9H0Q3 95 aa12.4□□□□□ -0.42
CLN3-211ENST00000564091 ANAPC10Q9UM13 185 aa12.4□□□□□ -0.42
CLN3-211ENST00000564091 MPTX1A8MV57 137 aa12.39□□□□□ -0.43
CLN3-211ENST00000564091 I3L2K1 104 aa12.39□□□□□ -0.43
CLN3-211ENST00000564091 GPR31O00270 319 aa12.39□□□□□ -0.43
CLN3-211ENST00000564091 NUPL2O15504 423 aaKnown RBP12.39□□□□□ -0.43
CLN3-211ENST00000564091 TAS2R20P59543 309 aa12.39□□□□□ -0.43
CLN3-211ENST00000564091 NANOS2P60321 138 aaKnown RBP12.39□□□□□ -0.43
CLN3-211ENST00000564091 RELQ04864 619 aaPredicted RBP12.39□□□□□ -0.43
CLN3-211ENST00000564091 PHLDA2Q53GA4 152 aa12.39□□□□□ -0.43
CLN3-211ENST00000564091 CADM3Q8N126 398 aa12.39□□□□□ -0.43
CLN3-211ENST00000564091 RARRES2Q99969 163 aa12.39□□□□□ -0.43
CLN3-211ENST00000564091 TMEM14BQ9NUH8 114 aa12.39□□□□□ -0.43
CLN3-211ENST00000564091 FKBP11Q9NYL4 201 aa12.39□□□□□ -0.43
CLN3-211ENST00000564091 C15orf61A6NNL5 157 aa12.38□□□□□ -0.43
CLN3-211ENST00000564091 MFAP4P55083 255 aa12.38□□□□□ -0.43
CLN3-211ENST00000564091 TAS2R46P59540 309 aa12.38□□□□□ -0.43
CLN3-211ENST00000564091 TMEM69Q5SWH9 247 aa12.38□□□□□ -0.43
CLN3-211ENST00000564091 LGALS9CQ6DKI2 356 aa12.38□□□□□ -0.43
CLN3-211ENST00000564091 LYSMD2Q8IV50 215 aa12.38□□□□□ -0.43
CLN3-211ENST00000564091 OR6F1Q8NGZ6 308 aa12.38□□□□□ -0.43
CLN3-211ENST00000564091 OR10C1Q96KK4 312 aa12.38□□□□□ -0.43
CLN3-211ENST00000564091 Q9H521 79 aa12.38□□□□□ -0.43
CLN3-211ENST00000564091 TRAV14DV4A0A0A6YYC5 116 aa12.37□□□□□ -0.43
CLN3-211ENST00000564091 MT-CO2P00403 227 aa12.37□□□□□ -0.43
CLN3-211ENST00000564091 NAT1P18440 290 aa12.37□□□□□ -0.43
CLN3-211ENST00000564091 HLA-DMAP28067 261 aa12.37□□□□□ -0.43
CLN3-211ENST00000564091 UBE2NLQ5JXB2 153 aa12.37□□□□□ -0.43
CLN3-211ENST00000564091 FAM90A2PQ658T7 463 aa12.37□□□□□ -0.43
CLN3-211ENST00000564091 SAMD12Q8N8I0 201 aa12.37□□□□□ -0.43
CLN3-211ENST00000564091 OR11H2Q8NH07 326 aa12.37□□□□□ -0.43
CLN3-211ENST00000564091 TSC22D3Q99576 134 aa12.37□□□□□ -0.43
CLN3-211ENST00000564091 NXF2Q9GZY0 626 aaKnown RBP12.37□□□□□ -0.43
CLN3-211ENST00000564091 FBXL17Q9UF56 701 aa12.37□□□□□ -0.43
CLN3-211ENST00000564091 DNAH6Q9C0G6 4158 aa12.36□□□□□ -0.43
CLN3-211ENST00000564091 DEFB4AO15263 64 aa12.36□□□□□ -0.43
CLN3-211ENST00000564091 ATP6V1G2O95670 118 aa12.36□□□□□ -0.43
CLN3-211ENST00000564091 HRH1P35367 487 aa12.36□□□□□ -0.43
CLN3-211ENST00000564091 RPS19P39019 145 aaKnown RBP12.36□□□□□ -0.43
CLN3-211ENST00000564091 CMC4P56277 68 aaPredicted RBP12.36□□□□□ -0.43
CLN3-211ENST00000564091 LILRB2Q8N423 598 aa12.36□□□□□ -0.43
CLN3-211ENST00000564091 OR4A16Q8NH70 328 aa12.36□□□□□ -0.43
CLN3-211ENST00000564091 C11orf45Q8TAV5 145 aa12.36□□□□□ -0.43
CLN3-211ENST00000564091 GATAD1Q8WUU5 269 aa12.36□□□□□ -0.43
CLN3-211ENST00000564091 PINX1Q96BK5 328 aaKnown RBP12.36□□□□□ -0.43
CLN3-211ENST00000564091 CMTM3Q96MX0 182 aa12.36□□□□□ -0.43
CLN3-211ENST00000564091 KIAA1109Q2LD37 5005 aa12.35□□□□□ -0.43
CLN3-211ENST00000564091 TMEM127O75204 238 aa12.35□□□□□ -0.43
CLN3-211ENST00000564091 IGKV1-39P01597 117 aa12.35□□□□□ -0.43
CLN3-211ENST00000564091 APOHP02749 345 aaPredicted RBP12.35□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 90.4 ms