RNA–Protein interactions for RNA: ENST00000563400.1

VPS35P1-201, Transcript of VPS35, retromer complex component pseudogene 1, humanhuman

BASIC

Gene VPS35P1, Length 1,518 nt, Biotype unprocessed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35P1-201ENST00000563400 RAI1Q7Z5J4 1906 aaPredicted RBP3.88□□□□□ -1.79
VPS35P1-201ENST00000563400 COL6A6A6NMZ7 2263 aa3.88□□□□□ -1.79
VPS35P1-201ENST00000563400 CCDC88CQ9P219 2028 aa3.87□□□□□ -1.79
VPS35P1-201ENST00000563400 ANKRD11Q6UB99 2663 aaPredicted RBP3.87□□□□□ -1.79
VPS35P1-201ENST00000563400 SPTA1P02549 2419 aa3.87□□□□□ -1.79
VPS35P1-201ENST00000563400 TRAV8-3A0A0A6YYJ7 113 aa3.87□□□□□ -1.79
VPS35P1-201ENST00000563400 FXYD1O00168 92 aa3.87□□□□□ -1.79
VPS35P1-201ENST00000563400 UBL3O95164 117 aa3.87□□□□□ -1.79
VPS35P1-201ENST00000563400 OPN1SWP03999 348 aa3.87□□□□□ -1.79
VPS35P1-201ENST00000563400 OR10J4P0C629 311 aa3.87□□□□□ -1.79
VPS35P1-201ENST00000563400 SULT1A3P0DMM9 295 aa3.87□□□□□ -1.79
VPS35P1-201ENST00000563400 SULT1A4P0DMN0 295 aa3.87□□□□□ -1.79
VPS35P1-201ENST00000563400 ZNF823P16415 610 aa3.87□□□□□ -1.79
VPS35P1-201ENST00000563400 COX7A1P24310 79 aa3.87□□□□□ -1.79
VPS35P1-201ENST00000563400 CDC42P60953 191 aa3.87□□□□□ -1.79
VPS35P1-201ENST00000563400 PAX8Q06710 450 aa3.87□□□□□ -1.79
VPS35P1-201ENST00000563400 CD47Q08722 323 aa3.87□□□□□ -1.79
VPS35P1-201ENST00000563400 TMEM128Q5BJH2 165 aa3.87□□□□□ -1.79
VPS35P1-201ENST00000563400 TMEM78Q5T7P6 136 aa3.87□□□□□ -1.79
VPS35P1-201ENST00000563400 FAM222AQ5U5X8 452 aa3.87□□□□□ -1.79
VPS35P1-201ENST00000563400 SMARCD3Q6STE5 483 aa3.87□□□□□ -1.79
VPS35P1-201ENST00000563400 MSRB3Q8IXL7 192 aa3.87□□□□□ -1.79
VPS35P1-201ENST00000563400 Q8NBF4 154 aa3.87□□□□□ -1.79
VPS35P1-201ENST00000563400 OR4S2Q8NH73 311 aa3.87□□□□□ -1.79
VPS35P1-201ENST00000563400 OR5K1Q8NHB7 308 aa3.87□□□□□ -1.79
VPS35P1-201ENST00000563400 SEH1LQ96EE3 360 aa3.87□□□□□ -1.79
VPS35P1-201ENST00000563400 ZNF184Q99676 751 aaPredicted RBP3.87□□□□□ -1.79
VPS35P1-201ENST00000563400 CHCHD5Q9BSY4 110 aa3.87□□□□□ -1.79
VPS35P1-201ENST00000563400 PROK2Q9HC23 129 aa3.87□□□□□ -1.79
VPS35P1-201ENST00000563400 FRYLO94915 3013 aa3.87□□□□□ -1.79
VPS35P1-201ENST00000563400 NUP214P35658 2090 aaPredicted RBP3.86□□□□□ -1.79
VPS35P1-201ENST00000563400 A0A087X002 238 aa3.86□□□□□ -1.79
VPS35P1-201ENST00000563400 A0A0J9YW62 118 aa3.86□□□□□ -1.79
VPS35P1-201ENST00000563400 LOC389332A0A1B0GUA5 103 aa3.86□□□□□ -1.79
VPS35P1-201ENST00000563400 TMEM72A0PK05 275 aa3.86□□□□□ -1.79
VPS35P1-201ENST00000563400 PGPA6NDG6 321 aa3.86□□□□□ -1.79
VPS35P1-201ENST00000563400 A8MXK9 166 aa3.86□□□□□ -1.79
VPS35P1-201ENST00000563400 INMT-MINDY4F8WBC2 141 aa3.86□□□□□ -1.79
VPS35P1-201ENST00000563400 K7EM74 188 aa3.86□□□□□ -1.79
VPS35P1-201ENST00000563400 ZNF354AO60765 605 aaPredicted RBP3.86□□□□□ -1.79
VPS35P1-201ENST00000563400 CRYZL1O95825 349 aa3.86□□□□□ -1.79
VPS35P1-201ENST00000563400 CD14P08571 375 aa3.86□□□□□ -1.79
VPS35P1-201ENST00000563400 ZBTB25P24278 435 aa3.86□□□□□ -1.79
VPS35P1-201ENST00000563400 APLNRP35414 380 aa3.86□□□□□ -1.79
VPS35P1-201ENST00000563400 GLRXP35754 106 aa3.86□□□□□ -1.79
VPS35P1-201ENST00000563400 FAM201AQ5SY85 155 aa3.86□□□□□ -1.79
VPS35P1-201ENST00000563400 SCGB1D4Q6XE38 83 aa3.86□□□□□ -1.79
VPS35P1-201ENST00000563400 FAM19A3Q7Z5A8 133 aa3.86□□□□□ -1.79
VPS35P1-201ENST00000563400 OSR2Q8N2R0 312 aa3.86□□□□□ -1.79
VPS35P1-201ENST00000563400 PACRGLQ8N7B6 248 aa3.86□□□□□ -1.79
VPS35P1-201ENST00000563400 OR10G2Q8NGC3 310 aa3.86□□□□□ -1.79
VPS35P1-201ENST00000563400 OR4K5Q8NGD3 323 aa3.86□□□□□ -1.79
VPS35P1-201ENST00000563400 FNDC9Q8TBE3 224 aa3.86□□□□□ -1.79
VPS35P1-201ENST00000563400 RPL36ALQ969Q0 106 aaKnown RBP3.86□□□□□ -1.79
VPS35P1-201ENST00000563400 ACY3Q96HD9 319 aa3.86□□□□□ -1.79
VPS35P1-201ENST00000563400 OR5M11Q96RB7 305 aa3.86□□□□□ -1.79
VPS35P1-201ENST00000563400 Q9H3A6 140 aa3.86□□□□□ -1.79
VPS35P1-201ENST00000563400 MED29Q9NX70 200 aa3.86□□□□□ -1.79
VPS35P1-201ENST00000563400 PSG8Q9UQ74 426 aa3.86□□□□□ -1.79
VPS35P1-201ENST00000563400 CSAG2Q9Y5P2 127 aa3.86□□□□□ -1.79
VPS35P1-201ENST00000563400 WSB1Q9Y6I7 421 aa3.86□□□□□ -1.79
VPS35P1-201ENST00000563400 FAM208BQ5VWN6 2430 aa3.86□□□□□ -1.79
VPS35P1-201ENST00000563400 NINQ8N4C6 2090 aa3.86□□□□□ -1.79
VPS35P1-201ENST00000563400 ESPL1Q14674 2120 aa3.86□□□□□ -1.79
VPS35P1-201ENST00000563400 DOCK10Q96BY6 2186 aa3.86□□□□□ -1.79
VPS35P1-201ENST00000563400 RP1L1Q8IWN7 2480 aaPredicted RBP3.85□□□□□ -1.79
VPS35P1-201ENST00000563400 IGHV6-1A0A0B4J1U7 121 aa3.85□□□□□ -1.79
VPS35P1-201ENST00000563400 WI2-2373I1.2A0A1W2PRP0 233 aa3.85□□□□□ -1.79
VPS35P1-201ENST00000563400 TCRBV3S1A0A5B6 114 aa3.85□□□□□ -1.79
VPS35P1-201ENST00000563400 PINLYPA6NC86 204 aa3.85□□□□□ -1.79
VPS35P1-201ENST00000563400 MAP1LC3B2A6NCE7 125 aa3.85□□□□□ -1.79
VPS35P1-201ENST00000563400 RPL36A-HNRNPH2H7BZ11 118 aa3.85□□□□□ -1.79
VPS35P1-201ENST00000563400 HBZP02008 142 aa3.85□□□□□ -1.79
VPS35P1-201ENST00000563400 ASAH2BP0C7U1 165 aa3.85□□□□□ -1.79
VPS35P1-201ENST00000563400 T-ENOLP0DO92 83 aa3.85□□□□□ -1.79
VPS35P1-201ENST00000563400 FGF6P10767 208 aa3.85□□□□□ -1.79
VPS35P1-201ENST00000563400 PGAM2P15259 253 aa3.85□□□□□ -1.79
VPS35P1-201ENST00000563400 ZNF136P52737 540 aa3.85□□□□□ -1.79
VPS35P1-201ENST00000563400 SLC25A1P53007 311 aa3.85□□□□□ -1.79
VPS35P1-201ENST00000563400 HSPE1P61604 102 aaKnown RBP3.85□□□□□ -1.79
VPS35P1-201ENST00000563400 GNB1P62873 340 aa3.85□□□□□ -1.79
VPS35P1-201ENST00000563400 HLA-DRB3P79483 266 aa3.85□□□□□ -1.79
VPS35P1-201ENST00000563400 FUT5Q11128 374 aa3.85□□□□□ -1.79
VPS35P1-201ENST00000563400 IGFBP7Q16270 282 aa3.85□□□□□ -1.79
VPS35P1-201ENST00000563400 SMIM21Q3B7S5 101 aa3.85□□□□□ -1.79
VPS35P1-201ENST00000563400 LRRC10Q5BKY1 277 aa3.85□□□□□ -1.79
VPS35P1-201ENST00000563400 C1orf194Q5T5A4 169 aa3.85□□□□□ -1.79
VPS35P1-201ENST00000563400 SAMD13Q5VXD3 122 aa3.85□□□□□ -1.79
VPS35P1-201ENST00000563400 ZNF343Q6P1L6 599 aa3.85□□□□□ -1.79
VPS35P1-201ENST00000563400 TMEM179BQ7Z7N9 219 aa3.85□□□□□ -1.79
VPS35P1-201ENST00000563400 SMIM29Q86T20 159 aa3.85□□□□□ -1.79
VPS35P1-201ENST00000563400 CANT1Q8WVQ1 401 aa3.85□□□□□ -1.79
VPS35P1-201ENST00000563400 GHSRQ92847 366 aa3.85□□□□□ -1.79
VPS35P1-201ENST00000563400 BORCS7Q96B45 105 aa3.85□□□□□ -1.79
VPS35P1-201ENST00000563400 C18orf15Q96N68 181 aa3.85□□□□□ -1.79
VPS35P1-201ENST00000563400 RSPO3Q9BXY4 272 aaPredicted RBP3.85□□□□□ -1.79
VPS35P1-201ENST00000563400 SAMD10Q9BYL1 202 aa3.85□□□□□ -1.79
VPS35P1-201ENST00000563400 ZNF436Q9C0F3 470 aaPredicted RBP3.85□□□□□ -1.79
VPS35P1-201ENST00000563400 MAP1LC3BQ9GZQ8 125 aa3.85□□□□□ -1.79
VPS35P1-201ENST00000563400 CCDC90BQ9GZT6 254 aa3.85□□□□□ -1.79
Retrieved 100 of 20,778 RNA–protein pairs in 53.5 ms