RNA–Protein interactions for RNA: ENST00000448833.5

VPS41-208, Transcript of VPS41, HOPS complex subunit, humanhuman

TSL 1 (best)

Gene VPS41, Length 711 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-208ENST00000448833 NUPL2O15504 423 aaKnown RBP5.3□□□□□ -1.56
VPS41-208ENST00000448833 ATG12O94817 140 aa5.3□□□□□ -1.56
VPS41-208ENST00000448833 SCAF4O95104 1147 aaKnown RBP5.3□□□□□ -1.56
VPS41-208ENST00000448833 S1PR2O95136 353 aa5.3□□□□□ -1.56
VPS41-208ENST00000448833 KRASP01116 189 aa5.3□□□□□ -1.56
VPS41-208ENST00000448833 APOA1P02647 267 aa5.3□□□□□ -1.56
VPS41-208ENST00000448833 CLEC2LP0C7M8 214 aa5.3□□□□□ -1.56
VPS41-208ENST00000448833 ATF4P18848 351 aaPredicted RBP5.3□□□□□ -1.56
VPS41-208ENST00000448833 LPAR6P43657 344 aa5.3□□□□□ -1.56
VPS41-208ENST00000448833 RFX2P48378 723 aa5.3□□□□□ -1.56
VPS41-208ENST00000448833 PAFAH1B2P68402 229 aa5.3□□□□□ -1.56
VPS41-208ENST00000448833 TM4SF20Q53R12 229 aa5.3□□□□□ -1.56
VPS41-208ENST00000448833 BTNL8Q6UX41 500 aa5.3□□□□□ -1.56
VPS41-208ENST00000448833 H2BFWTQ7Z2G1 175 aa5.3□□□□□ -1.56
VPS41-208ENST00000448833 WFDC3Q8IUB2 231 aa5.3□□□□□ -1.56
VPS41-208ENST00000448833 STPG3Q8N7X2 389 aa5.3□□□□□ -1.56
VPS41-208ENST00000448833 SAMD12Q8N8I0 201 aa5.3□□□□□ -1.56
VPS41-208ENST00000448833 OR4A16Q8NH70 328 aa5.3□□□□□ -1.56
VPS41-208ENST00000448833 TMEM190Q8WZ59 177 aa5.3□□□□□ -1.56
VPS41-208ENST00000448833 GPHA2Q96T91 129 aa5.3□□□□□ -1.56
VPS41-208ENST00000448833 HINT2Q9BX68 163 aa5.3□□□□□ -1.56
VPS41-208ENST00000448833 SCPEP1Q9HB40 452 aa5.3□□□□□ -1.56
VPS41-208ENST00000448833 C21orf62Q9NYP8 219 aa5.3□□□□□ -1.56
VPS41-208ENST00000448833 F11RQ9Y624 299 aaKnown RBP5.3□□□□□ -1.56
VPS41-208ENST00000448833 RYR2Q92736 4967 aa5.29□□□□□ -1.56
VPS41-208ENST00000448833 NUPR2A6NF83 97 aa5.29□□□□□ -1.56
VPS41-208ENST00000448833 OR2T8A6NH00 312 aa5.29□□□□□ -1.56
VPS41-208ENST00000448833 SCGB2A1O75556 95 aa5.29□□□□□ -1.56
VPS41-208ENST00000448833 TNFAIP8O95379 198 aa5.29□□□□□ -1.56
VPS41-208ENST00000448833 PMP2P02689 132 aa5.29□□□□□ -1.56
VPS41-208ENST00000448833 RLN1P04808 185 aa5.29□□□□□ -1.56
VPS41-208ENST00000448833 PTHLHP12272 177 aa5.29□□□□□ -1.56
VPS41-208ENST00000448833 RPA2P15927 270 aa5.29□□□□□ -1.56
VPS41-208ENST00000448833 RPS19P39019 145 aaKnown RBP5.29□□□□□ -1.56
VPS41-208ENST00000448833 SUB1P53999 127 aaKnown RBP eCLIP5.29□□□□□ -1.56
VPS41-208ENST00000448833 MFAP4P55083 255 aa5.29□□□□□ -1.56
VPS41-208ENST00000448833 UCP3P55916 312 aa5.29□□□□□ -1.56
VPS41-208ENST00000448833 TAS2R20P59543 309 aa5.29□□□□□ -1.56
VPS41-208ENST00000448833 ERHP84090 104 aaKnown RBP5.29□□□□□ -1.56
VPS41-208ENST00000448833 WT1-ASQ06250 92 aa5.29□□□□□ -1.56
VPS41-208ENST00000448833 Q56UQ5 140 aa5.29□□□□□ -1.56
VPS41-208ENST00000448833 UNQ9165/PRO28630Q6UXU0 137 aa5.29□□□□□ -1.56
VPS41-208ENST00000448833 OR10W1Q8NGF6 305 aa5.29□□□□□ -1.56
VPS41-208ENST00000448833 OR1P1Q8NH06 330 aa5.29□□□□□ -1.56
VPS41-208ENST00000448833 SCARB1Q8WTV0 552 aa5.29□□□□□ -1.56
VPS41-208ENST00000448833 C15orf40Q8WUR7 153 aa5.29□□□□□ -1.56
VPS41-208ENST00000448833 FCAMRQ8WWV6 532 aa5.29□□□□□ -1.56
VPS41-208ENST00000448833 CACNG8Q8WXS5 425 aa5.29□□□□□ -1.56
VPS41-208ENST00000448833 GALNT14Q96FL9 552 aa5.29□□□□□ -1.56
VPS41-208ENST00000448833 GINS3Q9BRX5 216 aa5.29□□□□□ -1.56
VPS41-208ENST00000448833 RNF167Q9H6Y7 350 aa5.29□□□□□ -1.56
VPS41-208ENST00000448833 TMEM14BQ9NUH8 114 aa5.29□□□□□ -1.56
VPS41-208ENST00000448833 ANAPC10Q9UM13 185 aa5.29□□□□□ -1.56
VPS41-208ENST00000448833 KLK5Q9Y337 293 aaPredicted RBP5.29□□□□□ -1.56
VPS41-208ENST00000448833 S4R3C0 116 aa5.29□□□□□ -1.56
VPS41-208ENST00000448833 TRAV3A0A0B4J244 114 aa5.28□□□□□ -1.56
VPS41-208ENST00000448833 MEIS3P1A6NDR6 274 aa5.28□□□□□ -1.56
VPS41-208ENST00000448833 CORTO00230 105 aa5.28□□□□□ -1.56
VPS41-208ENST00000448833 SPRY2O43597 315 aa5.28□□□□□ -1.56
VPS41-208ENST00000448833 B3GALNT1O75752 331 aa5.28□□□□□ -1.56
VPS41-208ENST00000448833 EIF4EP06730 217 aaKnown RBP5.28□□□□□ -1.56
VPS41-208ENST00000448833 FCER2P06734 321 aa5.28□□□□□ -1.56
VPS41-208ENST00000448833 FCGR2BP31994 310 aaPredicted RBP5.28□□□□□ -1.56
VPS41-208ENST00000448833 RCVRNP35243 200 aa5.28□□□□□ -1.56
VPS41-208ENST00000448833 HRH1P35367 487 aa5.28□□□□□ -1.56
VPS41-208ENST00000448833 G6PCP35575 357 aa5.28□□□□□ -1.56
VPS41-208ENST00000448833 SNCAP37840 140 aa5.28□□□□□ -1.56
VPS41-208ENST00000448833 TNFRSF9Q07011 255 aa5.28□□□□□ -1.56
VPS41-208ENST00000448833 MZT2AQ6P582 158 aa5.28□□□□□ -1.56
VPS41-208ENST00000448833 C19orf35Q6ZS72 473 aa5.28□□□□□ -1.56
VPS41-208ENST00000448833 LYSMD2Q8IV50 215 aa5.28□□□□□ -1.56
VPS41-208ENST00000448833 UBAC2Q8NBM4 344 aa5.28□□□□□ -1.56
VPS41-208ENST00000448833 AP3S1Q92572 193 aa5.28□□□□□ -1.56
VPS41-208ENST00000448833 SLC25A46Q96AG3 418 aa5.28□□□□□ -1.56
VPS41-208ENST00000448833 ZNF486Q96H40 463 aaPredicted RBP5.28□□□□□ -1.56
VPS41-208ENST00000448833 OVOL2Q9BRP0 275 aa5.28□□□□□ -1.56
VPS41-208ENST00000448833 C20orf24Q9BUV8 137 aa5.28□□□□□ -1.56
VPS41-208ENST00000448833 RETNQ9HD89 108 aa5.28□□□□□ -1.56
VPS41-208ENST00000448833 CACFD1Q9UGQ2 172 aa5.28□□□□□ -1.56
VPS41-208ENST00000448833 STARD9Q9P2P6 4700 aa5.28□□□□□ -1.56
VPS41-208ENST00000448833 TRAV14DV4A0A0A6YYC5 116 aa5.27□□□□□ -1.57
VPS41-208ENST00000448833 IGHV3-35A0A0C4DH35 117 aa5.27□□□□□ -1.57
VPS41-208ENST00000448833 CXorf65A6NEN9 183 aa5.27□□□□□ -1.57
VPS41-208ENST00000448833 C15orf61A6NNL5 157 aa5.27□□□□□ -1.57
VPS41-208ENST00000448833 GNG7O60262 68 aa5.27□□□□□ -1.57
VPS41-208ENST00000448833 YIF1AO95070 293 aa5.27□□□□□ -1.57
VPS41-208ENST00000448833 CTSGP08311 255 aa5.27□□□□□ -1.57
VPS41-208ENST00000448833 TBPP20226 339 aa5.27□□□□□ -1.57
VPS41-208ENST00000448833 EDN2P20800 178 aa5.27□□□□□ -1.57
VPS41-208ENST00000448833 HLA-DMAP28067 261 aa5.27□□□□□ -1.57
VPS41-208ENST00000448833 ADMP35318 185 aa5.27□□□□□ -1.57
VPS41-208ENST00000448833 NPBWR1P48145 328 aa5.27□□□□□ -1.57
VPS41-208ENST00000448833 RORCP51449 518 aa5.27□□□□□ -1.57
VPS41-208ENST00000448833 HSPE1P61604 102 aaKnown RBP5.27□□□□□ -1.57
VPS41-208ENST00000448833 TBC1D26Q86UD7 250 aa5.27□□□□□ -1.57
VPS41-208ENST00000448833 ZNF114Q8NC26 417 aa5.27□□□□□ -1.57
VPS41-208ENST00000448833 TMEM116Q8NCL8 245 aa5.27□□□□□ -1.57
VPS41-208ENST00000448833 DUSP18Q8NEJ0 188 aa5.27□□□□□ -1.57
VPS41-208ENST00000448833 SVIPQ8NHG7 77 aa5.27□□□□□ -1.57
VPS41-208ENST00000448833 GPX8Q8TED1 209 aa5.27□□□□□ -1.57
Retrieved 100 of 20,778 RNA–protein pairs in 104.4 ms