RNA–Protein interactions for RNA: ENST00000374876.4

CCDC40-202, Transcript of coiled-coil domain containing 40, humanhuman

TSL 1 (best) BASIC

Gene CCDC40, Length 2,010 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40-202ENST00000374876 NDUFS6O75380 124 aaKnown RBP12.62□□□□□ -0.39
CCDC40-202ENST00000374876 RND2P52198 227 aa12.62□□□□□ -0.39
CCDC40-202ENST00000374876 RPL31P62899 125 aaKnown RBP12.62□□□□□ -0.39
CCDC40-202ENST00000374876 MEF2CQ06413 473 aaPredicted RBP12.62□□□□□ -0.39
CCDC40-202ENST00000374876 POU2AF1Q16633 256 aa12.62□□□□□ -0.39
CCDC40-202ENST00000374876 RAB1CQ92928 201 aa12.62□□□□□ -0.39
CCDC40-202ENST00000374876 MGST2Q99735 147 aa12.62□□□□□ -0.39
CCDC40-202ENST00000374876 HINT2Q9BX68 163 aa12.62□□□□□ -0.39
CCDC40-202ENST00000374876 NPVFQ9HCQ7 196 aa12.62□□□□□ -0.39
CCDC40-202ENST00000374876 PRNDQ9UKY0 176 aa12.62□□□□□ -0.39
CCDC40-202ENST00000374876 OR51B2Q9Y5P1 312 aa12.62□□□□□ -0.39
CCDC40-202ENST00000374876 PPIAL4EA0A075B759 164 aa12.62□□□□□ -0.39
CCDC40-202ENST00000374876 PPIAL4DF5H284 164 aa12.62□□□□□ -0.39
CCDC40-202ENST00000374876 S100A9P06702 114 aaKnown RBP12.62□□□□□ -0.39
CCDC40-202ENST00000374876 CT45A6P0DMU7 189 aa12.62□□□□□ -0.39
CCDC40-202ENST00000374876 CT45A5P0DMU8 189 aa12.62□□□□□ -0.39
CCDC40-202ENST00000374876 CT45A7P0DMV0 189 aa12.62□□□□□ -0.39
CCDC40-202ENST00000374876 PPIAL4FP0DN26 164 aa12.62□□□□□ -0.39
CCDC40-202ENST00000374876 PDLIM4P50479 330 aa12.62□□□□□ -0.39
CCDC40-202ENST00000374876 SPNS3Q6ZMD2 512 aa12.62□□□□□ -0.39
CCDC40-202ENST00000374876 CIARTQ8N365 385 aaPredicted RBP12.62□□□□□ -0.39
CCDC40-202ENST00000374876 OR10A7Q8NGE5 316 aa12.62□□□□□ -0.39
CCDC40-202ENST00000374876 OR13D1Q8NGV5 346 aa12.62□□□□□ -0.39
CCDC40-202ENST00000374876 CCL17Q92583 94 aa12.62□□□□□ -0.39
CCDC40-202ENST00000374876 NEIL1Q96FI4 390 aaPredicted RBP12.62□□□□□ -0.39
CCDC40-202ENST00000374876 FAM210BQ96KR6 192 aa12.62□□□□□ -0.39
CCDC40-202ENST00000374876 GGTLC1Q9BX51 225 aa12.62□□□□□ -0.39
CCDC40-202ENST00000374876 PATZ1Q9HBE1 687 aaKnown RBP12.62□□□□□ -0.39
CCDC40-202ENST00000374876 KCNIP2Q9NS61 270 aa12.62□□□□□ -0.39
CCDC40-202ENST00000374876 SLC35D1Q9NTN3 355 aa12.62□□□□□ -0.39
CCDC40-202ENST00000374876 PPIAL4AQ9Y536 164 aa12.62□□□□□ -0.39
CCDC40-202ENST00000374876 PXMP4Q9Y6I8 212 aa12.62□□□□□ -0.39
CCDC40-202ENST00000374876 IGHV1-69-2A0A0G2JMI3 117 aa12.61□□□□□ -0.39
CCDC40-202ENST00000374876 C11orf94C9JXX5 98 aa12.61□□□□□ -0.39
CCDC40-202ENST00000374876 OPN1MWP04001 364 aa12.61□□□□□ -0.39
CCDC40-202ENST00000374876 OPN1MW2P0DN77 364 aa12.61□□□□□ -0.39
CCDC40-202ENST00000374876 OPN1MW3P0DN78 364 aa12.61□□□□□ -0.39
CCDC40-202ENST00000374876 BSXQ3C1V8 233 aa12.61□□□□□ -0.39
CCDC40-202ENST00000374876 MAPK1IP1LQ8NDC0 245 aa12.61□□□□□ -0.39
CCDC40-202ENST00000374876 C10orf105Q8TEF2 133 aa12.61□□□□□ -0.39
CCDC40-202ENST00000374876 TCEAL7Q9BRU2 100 aa12.61□□□□□ -0.39
CCDC40-202ENST00000374876 ZNRD1Q9P1U0 126 aa12.61□□□□□ -0.39
CCDC40-202ENST00000374876 RNF223E7ERA6 249 aa12.61□□□□□ -0.39
CCDC40-202ENST00000374876 TMEM178BH3BS89 294 aa12.61□□□□□ -0.39
CCDC40-202ENST00000374876 YIF1AO95070 293 aa12.61□□□□□ -0.39
CCDC40-202ENST00000374876 CA2P00918 260 aa12.61□□□□□ -0.39
CCDC40-202ENST00000374876 IGKV1-16P04430 117 aa12.61□□□□□ -0.39
CCDC40-202ENST00000374876 TMEM249Q2WGJ8 235 aa12.61□□□□□ -0.39
CCDC40-202ENST00000374876 MIC13Q5XKP0 118 aa12.61□□□□□ -0.39
CCDC40-202ENST00000374876 ZNF714Q96N38 554 aa12.61□□□□□ -0.39
CCDC40-202ENST00000374876 J3QR06 171 aa12.6□□□□□ -0.39
CCDC40-202ENST00000374876 SMIM6P0DI80 62 aa12.6□□□□□ -0.39
CCDC40-202ENST00000374876 RPL23P62829 140 aaKnown RBP12.6□□□□□ -0.39
CCDC40-202ENST00000374876 TEPPQ6URK8 271 aa12.6□□□□□ -0.39
CCDC40-202ENST00000374876 SSX3Q99909 188 aa12.6□□□□□ -0.39
CCDC40-202ENST00000374876 PLEKHA3Q9HB20 300 aa12.6□□□□□ -0.39
CCDC40-202ENST00000374876 ZNF257Q9Y2Q1 563 aa12.6□□□□□ -0.39
CCDC40-202ENST00000374876 LSM4Q9Y4Z0 139 aaKnown RBP12.6□□□□□ -0.39
CCDC40-202ENST00000374876 TET2Q6N021 2002 aaPredicted RBP12.59□□□□□ -0.39
CCDC40-202ENST00000374876 UPK2O00526 184 aa12.59□□□□□ -0.39
CCDC40-202ENST00000374876 SMAD7O15105 426 aaKnown RBP12.59□□□□□ -0.39
CCDC40-202ENST00000374876 MYOD1P15172 320 aa12.59□□□□□ -0.39
CCDC40-202ENST00000374876 CCL3L1P16619 93 aa12.59□□□□□ -0.39
CCDC40-202ENST00000374876 DSCR9P59020 149 aa12.59□□□□□ -0.39
CCDC40-202ENST00000374876 RAB31Q13636 194 aa12.59□□□□□ -0.39
CCDC40-202ENST00000374876 ARSJQ5FYB0 599 aaPredicted RBP12.59□□□□□ -0.39
CCDC40-202ENST00000374876 CST9LP1Q5W188 147 aa12.59□□□□□ -0.39
CCDC40-202ENST00000374876 ZNF833PQ6ZTB9 187 aa12.59□□□□□ -0.39
CCDC40-202ENST00000374876 SSMEM1Q8WWF3 244 aa12.59□□□□□ -0.39
CCDC40-202ENST00000374876 H1FXQ92522 213 aaKnown RBP12.59□□□□□ -0.39
CCDC40-202ENST00000374876 BPESC1Q9GZL8 116 aa12.59□□□□□ -0.39
CCDC40-202ENST00000374876 TMEM106BQ9NUM4 274 aa12.59□□□□□ -0.39
CCDC40-202ENST00000374876 NDUFB3O43676 98 aa12.59□□□□□ -0.39
CCDC40-202ENST00000374876 PDE6DO43924 150 aa12.59□□□□□ -0.39
CCDC40-202ENST00000374876 TRGC2P03986 189 aa12.59□□□□□ -0.39
CCDC40-202ENST00000374876 UBE2G2P60604 165 aa12.59□□□□□ -0.39
CCDC40-202ENST00000374876 TMEM200BQ69YZ2 307 aa12.59□□□□□ -0.39
CCDC40-202ENST00000374876 C16orf82Q7Z2V1 217 aa12.59□□□□□ -0.39
CCDC40-202ENST00000374876 CHODLQ9H9P2 273 aa12.59□□□□□ -0.39
CCDC40-202ENST00000374876 ACANP16112 2415 aa12.59□□□□□ -0.39
CCDC40-202ENST00000374876 TRBV24-1A0A075B6N3 115 aa12.58□□□□□ -0.4
CCDC40-202ENST00000374876 SRRM4A7MD48 611 aaKnown RBP12.58□□□□□ -0.4
CCDC40-202ENST00000374876 TGOLN2O43493 480 aa12.58□□□□□ -0.4
CCDC40-202ENST00000374876 APOA2P02652 100 aa12.58□□□□□ -0.4
CCDC40-202ENST00000374876 IL6RP08887 468 aaPredicted RBP12.58□□□□□ -0.4
CCDC40-202ENST00000374876 ARL14EPLP0DKL9 152 aa12.58□□□□□ -0.4
CCDC40-202ENST00000374876 NDUFA6P56556 154 aa12.58□□□□□ -0.4
CCDC40-202ENST00000374876 B2MP61769 119 aa12.58□□□□□ -0.4
CCDC40-202ENST00000374876 PRCDQ00LT1 54 aa12.58□□□□□ -0.4
CCDC40-202ENST00000374876 LRRC10Q5BKY1 277 aa12.58□□□□□ -0.4
CCDC40-202ENST00000374876 PIMREGQ9BSJ6 248 aa12.58□□□□□ -0.4
CCDC40-202ENST00000374876 FKBP11Q9NYL4 201 aa12.58□□□□□ -0.4
CCDC40-202ENST00000374876 FLNAP21333 2647 aaKnown RBP12.58□□□□□ -0.4
CCDC40-202ENST00000374876 YLPM1P49750 1951 aaKnown RBP12.58□□□□□ -0.4
CCDC40-202ENST00000374876 VWC2LB2RUY7 222 aa12.57□□□□□ -0.4
CCDC40-202ENST00000374876 H7BYZ3 331 aa12.57□□□□□ -0.4
CCDC40-202ENST00000374876 CXorf1O96002 111 aa12.57□□□□□ -0.4
CCDC40-202ENST00000374876 C1orf159Q96HA4 380 aa12.57□□□□□ -0.4
CCDC40-202ENST00000374876 MRPL20Q9BYC9 149 aaKnown RBP12.57□□□□□ -0.4
CCDC40-202ENST00000374876 HIVEP1P15822 2718 aa12.57□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 93.6 ms