RNA–Protein interactions for RNA: ENST00000355477.10

CLN3-202, Transcript of CLN3, battenin, humanhuman

TSL 1 (best) BASIC

Gene CLN3, Length 1,173 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-202ENST00000355477 MARCH1Q8TCQ1 289 aa13.87□□□□□ -0.19
CLN3-202ENST00000355477 DYNLRB2Q8TF09 96 aa13.87□□□□□ -0.19
CLN3-202ENST00000355477 TMEM56Q96MV1 263 aa13.87□□□□□ -0.19
CLN3-202ENST00000355477 SLIRPQ9GZT3 109 aaKnown RBP13.87□□□□□ -0.19
CLN3-202ENST00000355477 C3orf85A0A1B0GTC6 90 aa13.86□□□□□ -0.19
CLN3-202ENST00000355477 OR2T8A6NH00 312 aa13.86□□□□□ -0.19
CLN3-202ENST00000355477 A8MWP6 167 aa13.86□□□□□ -0.19
CLN3-202ENST00000355477 CTDSPLO15194 276 aa13.86□□□□□ -0.19
CLN3-202ENST00000355477 SP6Q3SY56 376 aa13.86□□□□□ -0.19
CLN3-202ENST00000355477 PLET1Q6UQ28 207 aa13.86□□□□□ -0.19
CLN3-202ENST00000355477 ZFAND1Q8TCF1 268 aa13.86□□□□□ -0.19
CLN3-202ENST00000355477 SCARB1Q8WTV0 552 aa13.86□□□□□ -0.19
CLN3-202ENST00000355477 RCHY1Q96PM5 261 aa13.86□□□□□ -0.19
CLN3-202ENST00000355477 C6orf62Q9GZU0 229 aaPredicted RBP13.86□□□□□ -0.19
CLN3-202ENST00000355477 TECRQ9NZ01 308 aaKnown RBP13.86□□□□□ -0.19
CLN3-202ENST00000355477 KMT2CQ8NEZ4 4911 aaKnown RBP13.85□□□□□ -0.19
CLN3-202ENST00000355477 F8W735 103 aaPredicted RBP13.85□□□□□ -0.19
CLN3-202ENST00000355477 K7EIM0 57 aa13.85□□□□□ -0.19
CLN3-202ENST00000355477 TGOLN2O43493 480 aa13.85□□□□□ -0.19
CLN3-202ENST00000355477 P0C879 139 aa13.85□□□□□ -0.19
CLN3-202ENST00000355477 UXS1Q8NBZ7 420 aa13.85□□□□□ -0.19
CLN3-202ENST00000355477 WDR89Q96FK6 387 aaPredicted RBP13.85□□□□□ -0.19
CLN3-202ENST00000355477 TM2D3Q9BRN9 247 aa13.85□□□□□ -0.19
CLN3-202ENST00000355477 ZNF436Q9C0F3 470 aaPredicted RBP13.85□□□□□ -0.19
CLN3-202ENST00000355477 COPZ2Q9P299 210 aa13.85□□□□□ -0.19
CLN3-202ENST00000355477 MLXQ9UH92 298 aa13.85□□□□□ -0.19
CLN3-202ENST00000355477 CEPT1Q9Y6K0 416 aa13.85□□□□□ -0.19
CLN3-202ENST00000355477 A0A0B4J293 547 aa13.84□□□□□ -0.19
CLN3-202ENST00000355477 CTSDP07339 412 aaPredicted RBP13.84□□□□□ -0.19
CLN3-202ENST00000355477 CD7P09564 240 aa13.84□□□□□ -0.19
CLN3-202ENST00000355477 TNFSF8P32971 234 aa13.84□□□□□ -0.19
CLN3-202ENST00000355477 HSPE1P61604 102 aaKnown RBP13.84□□□□□ -0.19
CLN3-202ENST00000355477 PRCDQ00LT1 54 aa13.84□□□□□ -0.19
CLN3-202ENST00000355477 MEF2DQ14814 521 aa13.84□□□□□ -0.19
CLN3-202ENST00000355477 SPINK9Q5DT21 86 aa13.84□□□□□ -0.19
CLN3-202ENST00000355477 OR2C3Q8N628 320 aa13.84□□□□□ -0.19
CLN3-202ENST00000355477 OR4C16Q8NGL9 310 aa13.84□□□□□ -0.19
CLN3-202ENST00000355477 OR1P1Q8NH06 330 aa13.84□□□□□ -0.19
CLN3-202ENST00000355477 SOSTQ9BQB4 213 aa13.84□□□□□ -0.19
CLN3-202ENST00000355477 RTBDNQ9BSG5 229 aaPredicted RBP13.84□□□□□ -0.19
CLN3-202ENST00000355477 CHRDL1Q9BU40 450 aa13.84□□□□□ -0.19
CLN3-202ENST00000355477 C21orf62Q9NYP8 219 aa13.84□□□□□ -0.19
CLN3-202ENST00000355477 NOL3O60936 208 aaKnown RBP13.83□□□□□ -0.2
CLN3-202ENST00000355477 AKAIN1P0CW23 69 aa13.83□□□□□ -0.2
CLN3-202ENST00000355477 ADMP35318 185 aa13.83□□□□□ -0.2
CLN3-202ENST00000355477 CD81P60033 236 aa13.83□□□□□ -0.2
CLN3-202ENST00000355477 GUCA2BQ16661 112 aa13.83□□□□□ -0.2
CLN3-202ENST00000355477 CCDC71LQ8N9Z2 235 aa13.83□□□□□ -0.2
CLN3-202ENST00000355477 OR1L6Q8NGR2 347 aa13.83□□□□□ -0.2
CLN3-202ENST00000355477 BSCL2Q96G97 398 aaPredicted RBP13.83□□□□□ -0.2
CLN3-202ENST00000355477 NEURL2Q9BR09 285 aa13.83□□□□□ -0.2
CLN3-202ENST00000355477 NXF2Q9GZY0 626 aaKnown RBP13.83□□□□□ -0.2
CLN3-202ENST00000355477 TUBA4BQ9H853 241 aa13.83□□□□□ -0.2
CLN3-202ENST00000355477 ZMAT4Q9H898 229 aa13.83□□□□□ -0.2
CLN3-202ENST00000355477 PLEKHA3Q9HB20 300 aa13.83□□□□□ -0.2
CLN3-202ENST00000355477 RABL2AQ9UBK7 228 aaPredicted RBP13.83□□□□□ -0.2
CLN3-202ENST00000355477 RABL2BQ9UNT1 228 aa13.83□□□□□ -0.2
CLN3-202ENST00000355477 A0A0G2JRQ6 117 aa13.82□□□□□ -0.2
CLN3-202ENST00000355477 DISC1C4P0D8 188 aa13.82□□□□□ -0.2
CLN3-202ENST00000355477 GSTZ1O43708 216 aaPredicted RBP13.82□□□□□ -0.2
CLN3-202ENST00000355477 C8orf88P0DMB2 117 aa13.82□□□□□ -0.2
CLN3-202ENST00000355477 UCP1P25874 307 aa13.82□□□□□ -0.2
CLN3-202ENST00000355477 HAGHQ16775 308 aa13.82□□□□□ -0.2
CLN3-202ENST00000355477 TRIM16LQ309B1 348 aa13.82□□□□□ -0.2
CLN3-202ENST00000355477 ZNF57Q68EA5 555 aaPredicted RBP13.82□□□□□ -0.2
CLN3-202ENST00000355477 TMEM61Q8N0U2 210 aa13.82□□□□□ -0.2
CLN3-202ENST00000355477 UBAC2Q8NBM4 344 aa13.82□□□□□ -0.2
CLN3-202ENST00000355477 MCFD2Q8NI22 146 aa13.82□□□□□ -0.2
CLN3-202ENST00000355477 ZNF414Q96IQ9 312 aa13.82□□□□□ -0.2
CLN3-202ENST00000355477 WFDC10AQ9H1F0 79 aa13.82□□□□□ -0.2
CLN3-202ENST00000355477 C5orf66Q9H5L9 145 aa13.82□□□□□ -0.2
CLN3-202ENST00000355477 PALMDQ9NP74 551 aa13.82□□□□□ -0.2
CLN3-202ENST00000355477 ANKRD20A5PA0PJZ0 165 aa13.81□□□□□ -0.2
CLN3-202ENST00000355477 I3L2K1 104 aa13.81□□□□□ -0.2
CLN3-202ENST00000355477 ST8SIA3O43173 380 aa13.81□□□□□ -0.2
CLN3-202ENST00000355477 AKR1C2P52895 323 aa13.81□□□□□ -0.2
CLN3-202ENST00000355477 BTNL8Q6UX41 500 aa13.81□□□□□ -0.2
CLN3-202ENST00000355477 ZNF114Q8NC26 417 aa13.81□□□□□ -0.2
CLN3-202ENST00000355477 OR51S1Q8NGJ8 323 aa13.81□□□□□ -0.2
CLN3-202ENST00000355477 TMEM190Q8WZ59 177 aa13.81□□□□□ -0.2
CLN3-202ENST00000355477 MISP3Q96FF7 219 aa13.81□□□□□ -0.2
CLN3-202ENST00000355477 ATP6V0BQ99437 205 aa13.81□□□□□ -0.2
CLN3-202ENST00000355477 SLC2A8Q9NY64 477 aa13.81□□□□□ -0.2
CLN3-202ENST00000355477 RSL24D1Q9UHA3 163 aaKnown RBP13.81□□□□□ -0.2
CLN3-202ENST00000355477 GPR132Q9UNW8 380 aa13.81□□□□□ -0.2
CLN3-202ENST00000355477 UFC1Q9Y3C8 167 aa13.81□□□□□ -0.2
CLN3-202ENST00000355477 IGHV3OR16-8A0A075B7F1 116 aa13.8□□□□□ -0.2
CLN3-202ENST00000355477 FABP12A6NFH5 140 aa13.8□□□□□ -0.2
CLN3-202ENST00000355477 SCAF4O95104 1147 aaKnown RBP13.8□□□□□ -0.2
CLN3-202ENST00000355477 IGHV3-48P01763 117 aa13.8□□□□□ -0.2
CLN3-202ENST00000355477 CTSGP08311 255 aa13.8□□□□□ -0.2
CLN3-202ENST00000355477 OR5AC1P0C628 307 aa13.8□□□□□ -0.2
CLN3-202ENST00000355477 ELLP55199 621 aaPredicted RBP13.8□□□□□ -0.2
CLN3-202ENST00000355477 Q56UQ5 140 aa13.8□□□□□ -0.2
CLN3-202ENST00000355477 SPSB3Q6PJ21 355 aa13.8□□□□□ -0.2
CLN3-202ENST00000355477 Q6ZRM9 215 aa13.8□□□□□ -0.2
CLN3-202ENST00000355477 DEFB125Q8N687 156 aa13.8□□□□□ -0.2
CLN3-202ENST00000355477 LHFPL5Q8TAF8 219 aa13.8□□□□□ -0.2
CLN3-202ENST00000355477 GLYATL2Q8WU03 294 aa13.8□□□□□ -0.2
CLN3-202ENST00000355477 TMEM222Q9H0R3 208 aa13.8□□□□□ -0.2
Retrieved 100 of 20,778 RNA–protein pairs in 53.3 ms