RNA–Protein interactions for RNA: ENST00000563400.1

VPS35P1-201, Transcript of VPS35, retromer complex component pseudogene 1, humanhuman

BASIC

Gene VPS35P1, Length 1,518 nt, Biotype unprocessed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35P1-201ENST00000563400 DOLPP1Q86YN1 238 aa3.9□□□□□ -1.79
VPS35P1-201ENST00000563400 CNEP1R1Q8N9A8 125 aa3.9□□□□□ -1.79
VPS35P1-201ENST00000563400 OR51A2Q8NGJ7 313 aa3.9□□□□□ -1.79
VPS35P1-201ENST00000563400 MCFD2Q8NI22 146 aa3.9□□□□□ -1.79
VPS35P1-201ENST00000563400 RNASE11Q8TAA1 199 aaKnown RBP3.9□□□□□ -1.79
VPS35P1-201ENST00000563400 RXFP4Q8TDU9 374 aa3.9□□□□□ -1.79
VPS35P1-201ENST00000563400 PFDN5Q99471 154 aa3.9□□□□□ -1.79
VPS35P1-201ENST00000563400 PRSS27Q9BQR3 290 aa3.9□□□□□ -1.79
VPS35P1-201ENST00000563400 Q9H521 79 aa3.9□□□□□ -1.79
VPS35P1-201ENST00000563400 DPM3Q9P2X0 92 aa3.9□□□□□ -1.79
VPS35P1-201ENST00000563400 RNF7Q9UBF6 113 aa3.9□□□□□ -1.79
VPS35P1-201ENST00000563400 HSPB11Q9Y547 144 aa3.9□□□□□ -1.79
VPS35P1-201ENST00000563400 MYO15AQ9UKN7 3530 aa3.9□□□□□ -1.79
VPS35P1-201ENST00000563400 NCOR2Q9Y618 2525 aa3.89□□□□□ -1.79
VPS35P1-201ENST00000563400 EPG5Q9HCE0 2579 aa3.89□□□□□ -1.79
VPS35P1-201ENST00000563400 LAMA1P25391 3075 aa3.89□□□□□ -1.79
VPS35P1-201ENST00000563400 CFAP54Q96N23 3096 aa3.89□□□□□ -1.79
VPS35P1-201ENST00000563400 COL27A1Q8IZC6 1860 aaPredicted RBP3.89□□□□□ -1.79
VPS35P1-201ENST00000563400 PTPRQQ9UMZ3 2332 aa3.89□□□□□ -1.79
VPS35P1-201ENST00000563400 TEX50A0A1B0GTY4 177 aa3.89□□□□□ -1.79
VPS35P1-201ENST00000563400 A0A1B0GWA3 101 aa3.89□□□□□ -1.79
VPS35P1-201ENST00000563400 IRGMA1A4Y4 181 aa3.89□□□□□ -1.79
VPS35P1-201ENST00000563400 IGSF23A1L1A6 192 aa3.89□□□□□ -1.79
VPS35P1-201ENST00000563400 PLAC8L1A1L4L8 177 aa3.89□□□□□ -1.79
VPS35P1-201ENST00000563400 RFPL4AA6NLU0 287 aa3.89□□□□□ -1.79
VPS35P1-201ENST00000563400 CPSF4LA6NMK7 179 aaKnown RBP3.89□□□□□ -1.79
VPS35P1-201ENST00000563400 PMS2P5A8MQ11 134 aa3.89□□□□□ -1.79
VPS35P1-201ENST00000563400 ZNF850A8MQ14 1090 aa3.89□□□□□ -1.79
VPS35P1-201ENST00000563400 RFPL4AL1F8VTS6 287 aa3.89□□□□□ -1.79
VPS35P1-201ENST00000563400 G3V2T6 193 aa3.89□□□□□ -1.79
VPS35P1-201ENST00000563400 PSPHP1O15172 72 aa3.89□□□□□ -1.79
VPS35P1-201ENST00000563400 ZNF253O75346 499 aa3.89□□□□□ -1.79
VPS35P1-201ENST00000563400 TNFSF13O75888 250 aa3.89□□□□□ -1.79
VPS35P1-201ENST00000563400 OR2A4O95047 310 aa3.89□□□□□ -1.79
VPS35P1-201ENST00000563400 NDUFB2O95178 105 aa3.89□□□□□ -1.79
VPS35P1-201ENST00000563400 TTRP02766 147 aa3.89□□□□□ -1.79
VPS35P1-201ENST00000563400 PATE4P0C8F1 98 aa3.89□□□□□ -1.79
VPS35P1-201ENST00000563400 COX6B1P14854 86 aa3.89□□□□□ -1.79
VPS35P1-201ENST00000563400 RAB3AP20336 220 aa3.89□□□□□ -1.79
VPS35P1-201ENST00000563400 PSMB2P49721 201 aa3.89□□□□□ -1.79
VPS35P1-201ENST00000563400 LHX2P50458 406 aa3.89□□□□□ -1.79
VPS35P1-201ENST00000563400 DEFA1P59665 94 aa3.89□□□□□ -1.79
VPS35P1-201ENST00000563400 EGFEM1PQ0D2K5 195 aa3.89□□□□□ -1.79
VPS35P1-201ENST00000563400 FOXF1Q12946 379 aa3.89□□□□□ -1.79
VPS35P1-201ENST00000563400 Q499Y3 187 aa3.89□□□□□ -1.79
VPS35P1-201ENST00000563400 CGB2Q6NT52 195 aa3.89□□□□□ -1.79
VPS35P1-201ENST00000563400 LPCAT3Q6P1A2 487 aa3.89□□□□□ -1.79
VPS35P1-201ENST00000563400 AAED1Q7RTV5 226 aa3.89□□□□□ -1.79
VPS35P1-201ENST00000563400 NOTCH2NLQ7Z3S9 236 aa3.89□□□□□ -1.79
VPS35P1-201ENST00000563400 PRNTQ86SH4 94 aa3.89□□□□□ -1.79
VPS35P1-201ENST00000563400 C11orf53Q8IXP5 236 aa3.89□□□□□ -1.79
VPS35P1-201ENST00000563400 SLC35G3Q8N808 338 aa3.89□□□□□ -1.79
VPS35P1-201ENST00000563400 ZNF555Q8NEP9 628 aa3.89□□□□□ -1.79
VPS35P1-201ENST00000563400 ZNRF2Q8NHG8 242 aa3.89□□□□□ -1.79
VPS35P1-201ENST00000563400 ABHD3Q8WU67 409 aa3.89□□□□□ -1.79
VPS35P1-201ENST00000563400 ITLN1Q8WWA0 313 aa3.89□□□□□ -1.79
VPS35P1-201ENST00000563400 RNASE6Q93091 150 aaKnown RBP3.89□□□□□ -1.79
VPS35P1-201ENST00000563400 C12orf43Q96C57 262 aaKnown RBP3.89□□□□□ -1.79
VPS35P1-201ENST00000563400 OR2A7Q96R45 310 aa3.89□□□□□ -1.79
VPS35P1-201ENST00000563400 TMEM243Q9BU79 118 aa3.89□□□□□ -1.79
VPS35P1-201ENST00000563400 MRPL27Q9P0M9 148 aaKnown RBP3.89□□□□□ -1.79
VPS35P1-201ENST00000563400 GLS2Q9UI32 602 aa3.89□□□□□ -1.79
VPS35P1-201ENST00000563400 NOP16Q9Y3C1 178 aaKnown RBP3.89□□□□□ -1.79
VPS35P1-201ENST00000563400 NUBP2Q9Y5Y2 271 aa3.89□□□□□ -1.79
VPS35P1-201ENST00000563400 BPTFQ12830 3046 aa3.89□□□□□ -1.79
VPS35P1-201ENST00000563400 MAP1BP46821 2468 aaKnown RBP3.88□□□□□ -1.79
VPS35P1-201ENST00000563400 IGKV3D-15A0A087WSY6 115 aa3.88□□□□□ -1.79
VPS35P1-201ENST00000563400 A0A1B0GV90 55 aa3.88□□□□□ -1.79
VPS35P1-201ENST00000563400 ZNF98A6NK75 572 aa3.88□□□□□ -1.79
VPS35P1-201ENST00000563400 RIIAD1A6NNX1 92 aa3.88□□□□□ -1.79
VPS35P1-201ENST00000563400 PDE6DO43924 150 aa3.88□□□□□ -1.79
VPS35P1-201ENST00000563400 SS18L1O75177 396 aaPredicted RBP3.88□□□□□ -1.79
VPS35P1-201ENST00000563400 DUSP14O95147 198 aaKnown RBP3.88□□□□□ -1.79
VPS35P1-201ENST00000563400 OR5G3P0C626 314 aa3.88□□□□□ -1.79
VPS35P1-201ENST00000563400 CHTF8P0CG12 524 aa3.88□□□□□ -1.79
VPS35P1-201ENST00000563400 IFI30P13284 250 aa3.88□□□□□ -1.79
VPS35P1-201ENST00000563400 PLA2G2AP14555 144 aa3.88□□□□□ -1.79
VPS35P1-201ENST00000563400 PRTN3P24158 256 aa3.88□□□□□ -1.79
VPS35P1-201ENST00000563400 CD34P28906 385 aa3.88□□□□□ -1.79
VPS35P1-201ENST00000563400 SRP9P49458 86 aaKnown RBP3.88□□□□□ -1.79
VPS35P1-201ENST00000563400 CCR6P51684 374 aa3.88□□□□□ -1.79
VPS35P1-201ENST00000563400 TDGF1P3P51864 188 aa3.88□□□□□ -1.79
VPS35P1-201ENST00000563400 RAB2AP61019 212 aa3.88□□□□□ -1.79
VPS35P1-201ENST00000563400 JOSD1Q15040 202 aaPredicted RBP3.88□□□□□ -1.79
VPS35P1-201ENST00000563400 PRR4Q16378 134 aa3.88□□□□□ -1.79
VPS35P1-201ENST00000563400 ZNF239Q16600 458 aaKnown RBP3.88□□□□□ -1.79
VPS35P1-201ENST00000563400 FBXL19-AS1Q494R0 122 aa3.88□□□□□ -1.79
VPS35P1-201ENST00000563400 CENPWQ5EE01 88 aa3.88□□□□□ -1.79
VPS35P1-201ENST00000563400 TEX36Q5VZQ5 186 aa3.88□□□□□ -1.79
VPS35P1-201ENST00000563400 PAMR1Q6UXH9 720 aa3.88□□□□□ -1.79
VPS35P1-201ENST00000563400 OR2K2Q8NGT1 345 aa3.88□□□□□ -1.79
VPS35P1-201ENST00000563400 ZNF420Q8TAQ5 688 aaPredicted RBP3.88□□□□□ -1.79
VPS35P1-201ENST00000563400 NTN5Q8WTR8 489 aaPredicted RBP3.88□□□□□ -1.79
VPS35P1-201ENST00000563400 SLC25A44Q96H78 314 aaPredicted RBP3.88□□□□□ -1.79
VPS35P1-201ENST00000563400 C19orf24Q9BVV8 132 aa3.88□□□□□ -1.79
VPS35P1-201ENST00000563400 LINC00470Q9BZP3 86 aa3.88□□□□□ -1.79
VPS35P1-201ENST00000563400 JPT2Q9H910 190 aa3.88□□□□□ -1.79
VPS35P1-201ENST00000563400 POMPQ9Y244 141 aa3.88□□□□□ -1.79
VPS35P1-201ENST00000563400 TMEM14AQ9Y6G1 99 aa3.88□□□□□ -1.79
VPS35P1-201ENST00000563400 KMT2BQ9UMN6 2715 aaPredicted RBP3.88□□□□□ -1.79
Retrieved 100 of 20,778 RNA–protein pairs in 70.7 ms