RNA–Protein interactions for RNA: ENST00000488543.1

HDAC6-230, Transcript of histone deacetylase 6, humanhuman

TSL 2

Gene HDAC6, Length 2,484 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC6-230ENST00000488543 HIST1H2BDP58876 126 aa9.91□□□□□ -0.82
HDAC6-230ENST00000488543 HIST1H2BCP62807 126 aa9.91□□□□□ -0.82
HDAC6-230ENST00000488543 HIST2H2BEQ16778 126 aa9.91□□□□□ -0.82
HDAC6-230ENST00000488543 C9orf152Q5JTZ5 239 aa9.91□□□□□ -0.82
HDAC6-230ENST00000488543 HIST2H2BFQ5QNW6 126 aaPredicted RBP9.91□□□□□ -0.82
HDAC6-230ENST00000488543 LYG1Q8N1E2 194 aa9.91□□□□□ -0.82
HDAC6-230ENST00000488543 SCGB1C1Q8TD33 95 aa9.91□□□□□ -0.82
HDAC6-230ENST00000488543 HIST1H2BHQ93079 126 aa9.91□□□□□ -0.82
HDAC6-230ENST00000488543 OR4C12Q96R67 309 aa9.91□□□□□ -0.82
HDAC6-230ENST00000488543 HIST1H2BNQ99877 126 aa9.91□□□□□ -0.82
HDAC6-230ENST00000488543 HIST1H2BMQ99879 126 aa9.91□□□□□ -0.82
HDAC6-230ENST00000488543 GGACTQ9BVM4 153 aa9.91□□□□□ -0.82
HDAC6-230ENST00000488543 CHODLQ9H9P2 273 aa9.91□□□□□ -0.82
HDAC6-230ENST00000488543 S100A12P80511 92 aa9.91□□□□□ -0.82
HDAC6-230ENST00000488543 PYY3Q5JQD4 70 aa9.91□□□□□ -0.82
HDAC6-230ENST00000488543 C11orf42Q8N5U0 333 aa9.91□□□□□ -0.82
HDAC6-230ENST00000488543 ZNF383Q8NA42 475 aa9.91□□□□□ -0.82
HDAC6-230ENST00000488543 NECAP1Q8NC96 275 aa9.91□□□□□ -0.82
HDAC6-230ENST00000488543 R3HDM4Q96D70 268 aa9.91□□□□□ -0.82
HDAC6-230ENST00000488543 RAB40CQ96S21 281 aa9.91□□□□□ -0.82
HDAC6-230ENST00000488543 FAM90A26D6RGX4 464 aa9.9□□□□□ -0.82
HDAC6-230ENST00000488543 HPRT1P00492 218 aa9.9□□□□□ -0.82
HDAC6-230ENST00000488543 WDR25Q64LD2 544 aaPredicted RBP9.9□□□□□ -0.82
HDAC6-230ENST00000488543 GPR61Q9BZJ8 451 aa9.9□□□□□ -0.82
HDAC6-230ENST00000488543 HSPB7Q9UBY9 170 aa9.9□□□□□ -0.82
HDAC6-230ENST00000488543 CELSR1Q9NYQ6 3014 aa9.9□□□□□ -0.82
HDAC6-230ENST00000488543 BTBD17A6NE02 478 aa9.9□□□□□ -0.83
HDAC6-230ENST00000488543 MARCH11A6NNE9 402 aa9.9□□□□□ -0.83
HDAC6-230ENST00000488543 BCL2P10415 239 aa9.9□□□□□ -0.83
HDAC6-230ENST00000488543 KIR2DS2P43631 304 aa9.9□□□□□ -0.83
HDAC6-230ENST00000488543 THBS3P49746 956 aa9.9□□□□□ -0.83
HDAC6-230ENST00000488543 FRZBQ92765 325 aa9.9□□□□□ -0.83
HDAC6-230ENST00000488543 RAB1CQ92928 201 aa9.9□□□□□ -0.83
HDAC6-230ENST00000488543 ZDHHC16Q969W1 377 aa9.9□□□□□ -0.83
HDAC6-230ENST00000488543 S1PR3Q99500 378 aa9.9□□□□□ -0.83
HDAC6-230ENST00000488543 RBKSQ9H477 322 aa9.9□□□□□ -0.83
HDAC6-230ENST00000488543 SLC25A22Q9H936 323 aa9.9□□□□□ -0.83
HDAC6-230ENST00000488543 DFFBO76075 338 aa9.89□□□□□ -0.83
HDAC6-230ENST00000488543 OR9G9P0C7N8 305 aa9.89□□□□□ -0.83
HDAC6-230ENST00000488543 HOXA5P20719 270 aa9.89□□□□□ -0.83
HDAC6-230ENST00000488543 MAS1LP35410 378 aa9.89□□□□□ -0.83
HDAC6-230ENST00000488543 TNFRSF9Q07011 255 aa9.89□□□□□ -0.83
HDAC6-230ENST00000488543 ZNF833PQ6ZTB9 187 aa9.89□□□□□ -0.83
HDAC6-230ENST00000488543 H2BFWTQ7Z2G1 175 aa9.89□□□□□ -0.83
HDAC6-230ENST00000488543 OR10D4PQ8NGN7 298 aa9.89□□□□□ -0.83
HDAC6-230ENST00000488543 ZNF596Q8TC21 504 aa9.89□□□□□ -0.83
HDAC6-230ENST00000488543 MAP1LC3B2A6NCE7 125 aa9.89□□□□□ -0.83
HDAC6-230ENST00000488543 CT45A6P0DMU7 189 aa9.89□□□□□ -0.83
HDAC6-230ENST00000488543 CT45A5P0DMU8 189 aa9.89□□□□□ -0.83
HDAC6-230ENST00000488543 CT45A7P0DMV0 189 aa9.89□□□□□ -0.83
HDAC6-230ENST00000488543 DLX1P56177 255 aa9.89□□□□□ -0.83
HDAC6-230ENST00000488543 KHDC3LQ587J8 217 aa9.89□□□□□ -0.83
HDAC6-230ENST00000488543 ACSM6Q6P461 480 aa9.89□□□□□ -0.83
HDAC6-230ENST00000488543 ABHD5Q8WTS1 349 aa9.89□□□□□ -0.83
HDAC6-230ENST00000488543 TIMD4Q96H15 378 aa9.89□□□□□ -0.83
HDAC6-230ENST00000488543 ADTRPQ96IZ2 230 aa9.89□□□□□ -0.83
HDAC6-230ENST00000488543 MAP1LC3BQ9GZQ8 125 aa9.89□□□□□ -0.83
HDAC6-230ENST00000488543 OR51M1Q9H341 326 aa9.89□□□□□ -0.83
HDAC6-230ENST00000488543 CTNNBIP1Q9NSA3 81 aaPredicted RBP9.89□□□□□ -0.83
HDAC6-230ENST00000488543 A0A087X0M5 115 aa9.88□□□□□ -0.83
HDAC6-230ENST00000488543 A0A1B0GX30 115 aa9.88□□□□□ -0.83
HDAC6-230ENST00000488543 HBE1P02100 147 aa9.88□□□□□ -0.83
HDAC6-230ENST00000488543 TRGC1P0CF51 173 aa9.88□□□□□ -0.83
HDAC6-230ENST00000488543 GPR6P46095 362 aaPredicted RBP9.88□□□□□ -0.83
HDAC6-230ENST00000488543 PRB3Q04118 309 aaPredicted RBP9.88□□□□□ -0.83
HDAC6-230ENST00000488543 SLC38A11Q08AI6 406 aa9.88□□□□□ -0.83
HDAC6-230ENST00000488543 AARDQ4LEZ3 155 aa9.88□□□□□ -0.83
HDAC6-230ENST00000488543 C1QL4Q86Z23 238 aa9.88□□□□□ -0.83
HDAC6-230ENST00000488543 LINC00311Q8N616 119 aa9.88□□□□□ -0.83
HDAC6-230ENST00000488543 C8orf31Q8N9H6 132 aa9.88□□□□□ -0.83
HDAC6-230ENST00000488543 RPUSD4Q96CM3 377 aaKnown RBP9.88□□□□□ -0.83
HDAC6-230ENST00000488543 PSMG3-AS1Q96PY0 264 aa9.88□□□□□ -0.83
HDAC6-230ENST00000488543 UNKLQ9H9P5 680 aaKnown RBP9.88□□□□□ -0.83
HDAC6-230ENST00000488543 ANKRD17O75179 2603 aaKnown RBP9.88□□□□□ -0.83
HDAC6-230ENST00000488543 LY86O95711 162 aa9.88□□□□□ -0.83
HDAC6-230ENST00000488543 IGHV1-8P0DP01 117 aa9.88□□□□□ -0.83
HDAC6-230ENST00000488543 ADIRFQ15847 76 aa9.88□□□□□ -0.83
HDAC6-230ENST00000488543 RPP25LQ8N5L8 163 aaKnown RBP9.88□□□□□ -0.83
HDAC6-230ENST00000488543 OR4S2Q8NH73 311 aa9.88□□□□□ -0.83
HDAC6-230ENST00000488543 C8orf46Q8TAG6 207 aa9.88□□□□□ -0.83
HDAC6-230ENST00000488543 PERPQ96FX8 193 aa9.88□□□□□ -0.83
HDAC6-230ENST00000488543 BPESC1Q9GZL8 116 aa9.88□□□□□ -0.83
HDAC6-230ENST00000488543 SMDT1Q9H4I9 107 aa9.88□□□□□ -0.83
HDAC6-230ENST00000488543 FAM90A9PA6NNJ1 464 aa9.87□□□□□ -0.83
HDAC6-230ENST00000488543 LRRC75BQ2VPJ9 315 aa9.87□□□□□ -0.83
HDAC6-230ENST00000488543 SLC35E3Q7Z769 313 aa9.87□□□□□ -0.83
HDAC6-230ENST00000488543 VKORC1L1Q8N0U8 176 aa9.87□□□□□ -0.83
HDAC6-230ENST00000488543 OR5T1Q8NG75 326 aa9.87□□□□□ -0.83
HDAC6-230ENST00000488543 NEIL1Q96FI4 390 aaPredicted RBP9.87□□□□□ -0.83
HDAC6-230ENST00000488543 FAM210BQ96KR6 192 aa9.87□□□□□ -0.83
HDAC6-230ENST00000488543 QTRT1Q9BXR0 403 aaKnown RBP9.87□□□□□ -0.83
HDAC6-230ENST00000488543 WDR61Q9GZS3 305 aaKnown RBP9.87□□□□□ -0.83
HDAC6-230ENST00000488543 WNK2Q9Y3S1 2297 aa9.87□□□□□ -0.83
HDAC6-230ENST00000488543 A0A087WWC5 75 aa9.87□□□□□ -0.83
HDAC6-230ENST00000488543 J3QR06 171 aa9.87□□□□□ -0.83
HDAC6-230ENST00000488543 CDX1P47902 265 aaPredicted RBP9.87□□□□□ -0.83
HDAC6-230ENST00000488543 ATP5J2P56134 94 aa9.87□□□□□ -0.83
HDAC6-230ENST00000488543 SSX9Q7RTT3 188 aa9.87□□□□□ -0.83
HDAC6-230ENST00000488543 OR8B3Q8NGG8 313 aa9.87□□□□□ -0.83
HDAC6-230ENST00000488543 TAF15Q92804 592 aaKnown RBP eCLIP9.87□□□□□ -0.83
Retrieved 100 of 20,778 RNA–protein pairs in 103.2 ms