RNA–Protein interactions for RNA: ENST00000485412.1

SQSTM1-208, Transcript of sequestosome 1, humanhuman

TSL 2

Gene SQSTM1, Length 656 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-208ENST00000485412 OR2C3Q8N628 320 aa10.23□□□□□ -0.77
SQSTM1-208ENST00000485412 OR51H1Q8NH63 302 aa10.23□□□□□ -0.77
SQSTM1-208ENST00000485412 CXorf58Q96LI9 332 aa10.23□□□□□ -0.77
SQSTM1-208ENST00000485412 CHRDL1Q9BU40 450 aa10.23□□□□□ -0.77
SQSTM1-208ENST00000485412 SLC5A7Q9GZV3 580 aa10.23□□□□□ -0.77
SQSTM1-208ENST00000485412 TMEM140Q9NV12 185 aa10.23□□□□□ -0.77
SQSTM1-208ENST00000485412 MRPL27Q9P0M9 148 aaKnown RBP10.23□□□□□ -0.77
SQSTM1-208ENST00000485412 TRAV18A0A075B6X5 111 aa10.22□□□□□ -0.77
SQSTM1-208ENST00000485412 TRAV25A0A0B4J276 109 aa10.22□□□□□ -0.77
SQSTM1-208ENST00000485412 MEIS3P1A6NDR6 274 aa10.22□□□□□ -0.77
SQSTM1-208ENST00000485412 TGOLN2O43493 480 aa10.22□□□□□ -0.77
SQSTM1-208ENST00000485412 PTBP1P26599 531 aaKnown RBP eCLIP10.22□□□□□ -0.77
SQSTM1-208ENST00000485412 FCGR2BP31994 310 aaPredicted RBP10.22□□□□□ -0.77
SQSTM1-208ENST00000485412 SDC2P34741 201 aa10.22□□□□□ -0.77
SQSTM1-208ENST00000485412 ADMP35318 185 aa10.22□□□□□ -0.77
SQSTM1-208ENST00000485412 MXD1Q05195 221 aa10.22□□□□□ -0.77
SQSTM1-208ENST00000485412 POU2AF1Q16633 256 aa10.22□□□□□ -0.77
SQSTM1-208ENST00000485412 TMEM17Q86X19 198 aa10.22□□□□□ -0.77
SQSTM1-208ENST00000485412 SPARTQ8N0X7 666 aa10.22□□□□□ -0.77
SQSTM1-208ENST00000485412 STPG3Q8N7X2 389 aa10.22□□□□□ -0.77
SQSTM1-208ENST00000485412 OR4A5Q8NH83 315 aa10.22□□□□□ -0.77
SQSTM1-208ENST00000485412 MARC2Q969Z3 335 aa10.22□□□□□ -0.77
SQSTM1-208ENST00000485412 QTRT1Q9BXR0 403 aaKnown RBP10.22□□□□□ -0.77
SQSTM1-208ENST00000485412 C5orf66Q9H5L9 145 aa10.22□□□□□ -0.77
SQSTM1-208ENST00000485412 UFC1Q9Y3C8 167 aa10.22□□□□□ -0.77
SQSTM1-208ENST00000485412 RYR1P21817 5038 aa10.21□□□□□ -0.77
SQSTM1-208ENST00000485412 TSPAN4O14817 238 aa10.21□□□□□ -0.77
SQSTM1-208ENST00000485412 RBFOX2O43251 390 aaKnown RBP eCLIP10.21□□□□□ -0.77
SQSTM1-208ENST00000485412 OR13C7P0DN81 318 aa10.21□□□□□ -0.77
SQSTM1-208ENST00000485412 ELLP55199 621 aaPredicted RBP10.21□□□□□ -0.77
SQSTM1-208ENST00000485412 TAS2R31P59538 309 aa10.21□□□□□ -0.77
SQSTM1-208ENST00000485412 HOGA1Q86XE5 327 aa10.21□□□□□ -0.77
SQSTM1-208ENST00000485412 GDPD1Q8N9F7 314 aa10.21□□□□□ -0.77
SQSTM1-208ENST00000485412 RNF183Q96D59 192 aa10.21□□□□□ -0.77
SQSTM1-208ENST00000485412 SPAG8Q99932 426 aaPredicted RBP10.21□□□□□ -0.77
SQSTM1-208ENST00000485412 COMMD5Q9GZQ3 224 aa10.21□□□□□ -0.77
SQSTM1-208ENST00000485412 BLOC1S6Q9UL45 172 aa10.21□□□□□ -0.77
SQSTM1-208ENST00000485412 NSG2Q9Y328 171 aa10.21□□□□□ -0.77
SQSTM1-208ENST00000485412 KIR2DL5BA0A0G2JN68 375 aa10.2□□□□□ -0.78
SQSTM1-208ENST00000485412 KIR2DL5BA0A0G2JPC4 375 aa10.2□□□□□ -0.78
SQSTM1-208ENST00000485412 TEX50A0A1B0GTY4 177 aa10.2□□□□□ -0.78
SQSTM1-208ENST00000485412 DBX1A6NMT0 343 aa10.2□□□□□ -0.78
SQSTM1-208ENST00000485412 HPRT1P00492 218 aa10.2□□□□□ -0.78
SQSTM1-208ENST00000485412 NQO2P16083 231 aa10.2□□□□□ -0.78
SQSTM1-208ENST00000485412 MSMO1Q15800 293 aa10.2□□□□□ -0.78
SQSTM1-208ENST00000485412 APRG1Q8IVJ8 170 aa10.2□□□□□ -0.78
SQSTM1-208ENST00000485412 KIR2DL5AQ8N109 375 aa10.2□□□□□ -0.78
SQSTM1-208ENST00000485412 DMBX1Q8NFW5 382 aa10.2□□□□□ -0.78
SQSTM1-208ENST00000485412 OR5B3Q8NH48 314 aa10.2□□□□□ -0.78
SQSTM1-208ENST00000485412 KIR2DL5BQ8NHK3 375 aa10.2□□□□□ -0.78
SQSTM1-208ENST00000485412 C20orf24Q9BUV8 137 aa10.2□□□□□ -0.78
SQSTM1-208ENST00000485412 DAZ1Q9NQZ3 744 aaKnown RBP10.2□□□□□ -0.78
SQSTM1-208ENST00000485412 DNAH17Q9UFH2 4485 aa10.19□□□□□ -0.78
SQSTM1-208ENST00000485412 IGHV3-49A0A0A0MS15 119 aa10.19□□□□□ -0.78
SQSTM1-208ENST00000485412 K7EIM0 57 aa10.19□□□□□ -0.78
SQSTM1-208ENST00000485412 SCGNO76038 276 aa10.19□□□□□ -0.78
SQSTM1-208ENST00000485412 SERPINE2P07093 398 aa10.19□□□□□ -0.78
SQSTM1-208ENST00000485412 CTSDP07339 412 aaPredicted RBP10.19□□□□□ -0.78
SQSTM1-208ENST00000485412 GNRHRP30968 328 aa10.19□□□□□ -0.78
SQSTM1-208ENST00000485412 GABARAPL2P60520 117 aa10.19□□□□□ -0.78
SQSTM1-208ENST00000485412 IDNKQ5T6J7 187 aa10.19□□□□□ -0.78
SQSTM1-208ENST00000485412 AADACL3Q5VUY0 350 aa10.19□□□□□ -0.78
SQSTM1-208ENST00000485412 SLC25A24Q6NUK1 477 aa10.19□□□□□ -0.78
SQSTM1-208ENST00000485412 TPRA1Q86W33 373 aa10.19□□□□□ -0.78
SQSTM1-208ENST00000485412 VN1R17PQ8TDU5 208 aa10.19□□□□□ -0.78
SQSTM1-208ENST00000485412 SCARB1Q8WTV0 552 aa10.19□□□□□ -0.78
SQSTM1-208ENST00000485412 HINT2Q9BX68 163 aa10.19□□□□□ -0.78
SQSTM1-208ENST00000485412 AUNIPQ9H7T9 357 aa10.19□□□□□ -0.78
SQSTM1-208ENST00000485412 PLEKHA2Q9HB19 425 aa10.19□□□□□ -0.78
SQSTM1-208ENST00000485412 FBXL17Q9UF56 701 aa10.19□□□□□ -0.78
SQSTM1-208ENST00000485412 AGRNO00468 2067 aa10.18□□□□□ -0.78
SQSTM1-208ENST00000485412 RLN1P04808 185 aa10.18□□□□□ -0.78
SQSTM1-208ENST00000485412 IFNA4P05014 189 aa10.18□□□□□ -0.78
SQSTM1-208ENST00000485412 TRAPPC2P0DI81 140 aa10.18□□□□□ -0.78
SQSTM1-208ENST00000485412 TRAPPC2BP0DI82 140 aa10.18□□□□□ -0.78
SQSTM1-208ENST00000485412 CATR1Q13166 79 aa10.18□□□□□ -0.78
SQSTM1-208ENST00000485412 UBAC2Q8NBM4 344 aa10.18□□□□□ -0.78
SQSTM1-208ENST00000485412 ZBTB34Q8NCN2 500 aa10.18□□□□□ -0.78
SQSTM1-208ENST00000485412 FCAMRQ8WWV6 532 aa10.18□□□□□ -0.78
SQSTM1-208ENST00000485412 RNF2Q99496 336 aa10.18□□□□□ -0.78
SQSTM1-208ENST00000485412 SRSF8Q9BRL6 282 aaKnown RBP10.18□□□□□ -0.78
SQSTM1-208ENST00000485412 MAP6D1Q9H9H5 199 aa10.18□□□□□ -0.78
SQSTM1-208ENST00000485412 NDUFA4L2Q9NRX3 87 aa10.18□□□□□ -0.78
SQSTM1-208ENST00000485412 SSR3Q9UNL2 185 aa10.18□□□□□ -0.78
SQSTM1-208ENST00000485412 F11RQ9Y624 299 aaKnown RBP10.18□□□□□ -0.78
SQSTM1-208ENST00000485412 IGKV3-7A0A075B6H7 116 aa10.17□□□□□ -0.78
SQSTM1-208ENST00000485412 MARCH11A6NNE9 402 aa10.17□□□□□ -0.78
SQSTM1-208ENST00000485412 G6PCP35575 357 aa10.17□□□□□ -0.78
SQSTM1-208ENST00000485412 TGFBR1P36897 503 aa10.17□□□□□ -0.78
SQSTM1-208ENST00000485412 RFX2P48378 723 aa10.17□□□□□ -0.78
SQSTM1-208ENST00000485412 NANOS2P60321 138 aaKnown RBP10.17□□□□□ -0.78
SQSTM1-208ENST00000485412 RBMS2Q15434 407 aaKnown RBP10.17□□□□□ -0.78
SQSTM1-208ENST00000485412 LAMTOR1Q6IAA8 161 aa10.17□□□□□ -0.78
SQSTM1-208ENST00000485412 OR5AP2Q8NGF4 316 aa10.17□□□□□ -0.78
SQSTM1-208ENST00000485412 GIMAP1Q8WWP7 306 aa10.17□□□□□ -0.78
SQSTM1-208ENST00000485412 GALNT14Q96FL9 552 aa10.17□□□□□ -0.78
SQSTM1-208ENST00000485412 BSCL2Q96G97 398 aaPredicted RBP10.17□□□□□ -0.78
SQSTM1-208ENST00000485412 MFFQ9GZY8 342 aa10.17□□□□□ -0.78
SQSTM1-208ENST00000485412 FXYD6Q9H0Q3 95 aa10.17□□□□□ -0.78
SQSTM1-208ENST00000485412 C21orf62Q9NYP8 219 aa10.17□□□□□ -0.78
Retrieved 100 of 20,778 RNA–protein pairs in 122.5 ms