RNA–Protein interactions for RNA: ENST00000445265.6

TCOF1-206, Transcript of treacle ribosome biogenesis factor 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene TCOF1, Length 4,825 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TCOF1-206ENST00000445265 SPRR3Q9UBC9 169 aa13.92□□□□□ -0.18
TCOF1-206ENST00000445265 IGHV3-21A0A0B4J1V1 117 aa13.92□□□□□ -0.18
TCOF1-206ENST00000445265 SNRPCP09234 159 aaKnown RBP13.92□□□□□ -0.18
TCOF1-206ENST00000445265 GBGT1Q8N5D6 347 aa13.92□□□□□ -0.18
TCOF1-206ENST00000445265 CA5BP1Q8WTZ4 195 aa13.92□□□□□ -0.18
TCOF1-206ENST00000445265 NPIPB3Q92617 1050 aa13.92□□□□□ -0.18
TCOF1-206ENST00000445265 LIME1Q9H400 295 aa13.92□□□□□ -0.18
TCOF1-206ENST00000445265 C1QTNF9BB2RNN3 333 aa13.92□□□□□ -0.18
TCOF1-206ENST00000445265 OR5R1Q8NH85 324 aa13.92□□□□□ -0.18
TCOF1-206ENST00000445265 VPS25Q9BRG1 176 aa13.92□□□□□ -0.18
TCOF1-206ENST00000445265 FAM157AC9JC47 383 aa13.91□□□□□ -0.18
TCOF1-206ENST00000445265 KIAA1644Q3SXP7 199 aa13.91□□□□□ -0.18
TCOF1-206ENST00000445265 Q6P435 159 aa13.91□□□□□ -0.18
TCOF1-206ENST00000445265 PROK2Q9HC23 129 aa13.91□□□□□ -0.18
TCOF1-206ENST00000445265 LTBP2Q14767 1821 aa13.91□□□□□ -0.18
TCOF1-206ENST00000445265 IGHV3-72A0A0B4J1Y9 119 aa13.91□□□□□ -0.18
TCOF1-206ENST00000445265 PSPNO60542 156 aa13.91□□□□□ -0.18
TCOF1-206ENST00000445265 CBLN4Q9NTU7 201 aa13.91□□□□□ -0.18
TCOF1-206ENST00000445265 TMEM144Q7Z5S9 345 aa13.91□□□□□ -0.18
TCOF1-206ENST00000445265 C5orf17Q8NAS9 161 aa13.91□□□□□ -0.18
TCOF1-206ENST00000445265 C1RLQ9NZP8 487 aa13.91□□□□□ -0.18
TCOF1-206ENST00000445265 UQCR10Q9UDW1 63 aa13.91□□□□□ -0.18
TCOF1-206ENST00000445265 ZNF137PP52743 207 aa13.9□□□□□ -0.18
TCOF1-206ENST00000445265 PRR7Q8TB68 274 aa13.9□□□□□ -0.18
TCOF1-206ENST00000445265 A0A0G2JRQ6 117 aa13.9□□□□□ -0.18
TCOF1-206ENST00000445265 SLC17A3O00476 420 aa13.9□□□□□ -0.18
TCOF1-206ENST00000445265 GPX4P36969 197 aaPredicted RBP13.9□□□□□ -0.18
TCOF1-206ENST00000445265 OR52E5Q8NH55 327 aa13.9□□□□□ -0.18
TCOF1-206ENST00000445265 CACNG8Q8WXS5 425 aa13.9□□□□□ -0.18
TCOF1-206ENST00000445265 HIST1H2BLQ99880 126 aa13.9□□□□□ -0.18
TCOF1-206ENST00000445265 C15orf61A6NNL5 157 aa13.9□□□□□ -0.18
TCOF1-206ENST00000445265 SPATA45Q537H7 98 aa13.9□□□□□ -0.18
TCOF1-206ENST00000445265 A0A1B0GV90 55 aa13.9□□□□□ -0.18
TCOF1-206ENST00000445265 JOSD1Q15040 202 aaPredicted RBP13.9□□□□□ -0.18
TCOF1-206ENST00000445265 TMEM105Q8N8V8 129 aa13.9□□□□□ -0.18
TCOF1-206ENST00000445265 PRNTQ86SH4 94 aa13.89□□□□□ -0.19
TCOF1-206ENST00000445265 PARD6GQ9BYG4 376 aaPredicted RBP13.89□□□□□ -0.19
TCOF1-206ENST00000445265 RBM14-RBM4A0A0A0MSL8 147 aaKnown RBP13.89□□□□□ -0.19
TCOF1-206ENST00000445265 FAM87AP0C7U9 286 aa13.89□□□□□ -0.19
TCOF1-206ENST00000445265 RBM14Q96PK6 669 aaKnown RBP13.89□□□□□ -0.19
TCOF1-206ENST00000445265 CDC42EP3Q9UKI2 254 aa13.89□□□□□ -0.19
TCOF1-206ENST00000445265 LILRA1O75019 489 aa13.89□□□□□ -0.19
TCOF1-206ENST00000445265 OR9G9P0C7N8 305 aa13.89□□□□□ -0.19
TCOF1-206ENST00000445265 FAM201AQ5SY85 155 aa13.89□□□□□ -0.19
TCOF1-206ENST00000445265 RNF138Q8WVD3 245 aa13.89□□□□□ -0.19
TCOF1-206ENST00000445265 ZNF407Q9C0G0 2248 aa13.89□□□□□ -0.19
TCOF1-206ENST00000445265 IGKV1-6A0A0C4DH72 117 aa13.89□□□□□ -0.19
TCOF1-206ENST00000445265 LY6G6EA0A0G2JKS1 128 aa13.89□□□□□ -0.19
TCOF1-206ENST00000445265 C1QTNF9P0C862 333 aa13.89□□□□□ -0.19
TCOF1-206ENST00000445265 Q6ZRM9 215 aa13.89□□□□□ -0.19
TCOF1-206ENST00000445265 U3KQA8 63 aa13.89□□□□□ -0.19
TCOF1-206ENST00000445265 DOCK7Q96N67 2140 aa13.88□□□□□ -0.19
TCOF1-206ENST00000445265 RPL30P62888 115 aaKnown RBP13.88□□□□□ -0.19
TCOF1-206ENST00000445265 FOXF2Q12947 444 aa13.88□□□□□ -0.19
TCOF1-206ENST00000445265 C20orf204Q6ZNR8 217 aa13.88□□□□□ -0.19
TCOF1-206ENST00000445265 BPIFA4PQ86YQ2 179 aa13.88□□□□□ -0.19
TCOF1-206ENST00000445265 FAM216BQ8N7L0 139 aa13.88□□□□□ -0.19
TCOF1-206ENST00000445265 ELOVL1Q9BW60 279 aa13.88□□□□□ -0.19
TCOF1-206ENST00000445265 A0A1W2PRD5 423 aa13.88□□□□□ -0.19
TCOF1-206ENST00000445265 A0A1W2PRF3 423 aa13.88□□□□□ -0.19
TCOF1-206ENST00000445265 A0A1W2PRM7 423 aa13.88□□□□□ -0.19
TCOF1-206ENST00000445265 FOXI3A8MTJ6 420 aaPredicted RBP13.88□□□□□ -0.19
TCOF1-206ENST00000445265 AGMATQ9BSE5 352 aa13.88□□□□□ -0.19
TCOF1-206ENST00000445265 KIAA1549LQ6ZVL6 1849 aa13.88□□□□□ -0.19
TCOF1-206ENST00000445265 S100A4P26447 101 aaKnown RBP13.88□□□□□ -0.19
TCOF1-206ENST00000445265 FCER1GP30273 86 aa13.88□□□□□ -0.19
TCOF1-206ENST00000445265 CCDC144NLQ6NUI1 221 aa13.88□□□□□ -0.19
TCOF1-206ENST00000445265 MEF2CQ06413 473 aaPredicted RBP13.88□□□□□ -0.19
TCOF1-206ENST00000445265 ZCCHC14Q8WYQ9 949 aaKnown RBP13.88□□□□□ -0.19
TCOF1-206ENST00000445265 MIR17HGQ75NE6 70 aa13.87□□□□□ -0.19
TCOF1-206ENST00000445265 IMMP2LQ96T52 175 aa13.87□□□□□ -0.19
TCOF1-206ENST00000445265 KIF26AQ9ULI4 1882 aaPredicted RBP13.87□□□□□ -0.19
TCOF1-206ENST00000445265 SAA2-SAA4A0A096LPE2 208 aa13.87□□□□□ -0.19
TCOF1-206ENST00000445265 SAA2P0DJI9 122 aaPredicted RBP13.87□□□□□ -0.19
TCOF1-206ENST00000445265 HS3ST6Q96QI5 342 aa13.87□□□□□ -0.19
TCOF1-206ENST00000445265 CHODLQ9H9P2 273 aa13.87□□□□□ -0.19
TCOF1-206ENST00000445265 SRRM5B3KS81 715 aa13.87□□□□□ -0.19
TCOF1-206ENST00000445265 CD40P25942 277 aa13.87□□□□□ -0.19
TCOF1-206ENST00000445265 FAM90A2PQ658T7 463 aa13.87□□□□□ -0.19
TCOF1-206ENST00000445265 SNRNP40Q96DI7 357 aaKnown RBP13.87□□□□□ -0.19
TCOF1-206ENST00000445265 LINC00312Q9Y6C7 94 aa13.87□□□□□ -0.19
TCOF1-206ENST00000445265 UPK2O00526 184 aa13.87□□□□□ -0.19
TCOF1-206ENST00000445265 ATXN7O15265 892 aaPredicted RBP13.87□□□□□ -0.19
TCOF1-206ENST00000445265 TMEM177Q53S58 311 aa13.87□□□□□ -0.19
TCOF1-206ENST00000445265 GFI1BQ5VTD9 330 aa13.87□□□□□ -0.19
TCOF1-206ENST00000445265 TFF1P04155 84 aa13.86□□□□□ -0.19
TCOF1-206ENST00000445265 SOD3P08294 240 aa13.86□□□□□ -0.19
TCOF1-206ENST00000445265 MAS1LP35410 378 aa13.86□□□□□ -0.19
TCOF1-206ENST00000445265 NDUFAF3Q9BU61 184 aa13.86□□□□□ -0.19
TCOF1-206ENST00000445265 TAS2R60P59551 318 aa13.86□□□□□ -0.19
TCOF1-206ENST00000445265 TREML4Q6UXN2 200 aa13.86□□□□□ -0.19
TCOF1-206ENST00000445265 MDS2Q8NDY4 140 aa13.86□□□□□ -0.19
TCOF1-206ENST00000445265 SSBP3Q9BWW4 388 aaPredicted RBP13.86□□□□□ -0.19
TCOF1-206ENST00000445265 MRPL37Q9BZE1 423 aaKnown RBP13.86□□□□□ -0.19
TCOF1-206ENST00000445265 GOLT1BQ9Y3E0 138 aa13.86□□□□□ -0.19
TCOF1-206ENST00000445265 LINC00469Q8N7U9 141 aa13.86□□□□□ -0.19
TCOF1-206ENST00000445265 APC2O95996 2303 aa13.86□□□□□ -0.19
TCOF1-206ENST00000445265 SHANK1Q9Y566 2161 aa13.86□□□□□ -0.19
TCOF1-206ENST00000445265 STAG3L2P0CL84 134 aa13.85□□□□□ -0.19
TCOF1-206ENST00000445265 STAG3L3P0CL85 134 aa13.85□□□□□ -0.19
Retrieved 100 of 20,778 RNA–protein pairs in 67.7 ms