RNA–Protein interactions for RNA: ENST00000637100.1

CLN3-255, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,284 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-255ENST00000637100 SCAF4O95104 1147 aaKnown RBP12.19□□□□□ -0.46
CLN3-255ENST00000637100 LY6G6CO95867 125 aa12.19□□□□□ -0.46
CLN3-255ENST00000637100 HRASP01112 189 aa12.19□□□□□ -0.46
CLN3-255ENST00000637100 IGHV3-23P01764 117 aa12.19□□□□□ -0.46
CLN3-255ENST00000637100 PTBP1P26599 531 aaKnown RBP eCLIP12.19□□□□□ -0.46
CLN3-255ENST00000637100 OR2B8PP59922 312 aa12.19□□□□□ -0.46
CLN3-255ENST00000637100 LYG2Q86SG7 212 aa12.19□□□□□ -0.46
CLN3-255ENST00000637100 KIR2DL5AQ8N109 375 aa12.19□□□□□ -0.46
CLN3-255ENST00000637100 OR2C3Q8N628 320 aa12.19□□□□□ -0.46
CLN3-255ENST00000637100 KIR2DL5BQ8NHK3 375 aa12.19□□□□□ -0.46
CLN3-255ENST00000637100 ATP6V0BQ99437 205 aa12.19□□□□□ -0.46
CLN3-255ENST00000637100 SPAG8Q99932 426 aaPredicted RBP12.19□□□□□ -0.46
CLN3-255ENST00000637100 ANXA10Q9UJ72 324 aa12.19□□□□□ -0.46
CLN3-255ENST00000637100 S4R3C0 116 aa12.19□□□□□ -0.46
CLN3-255ENST00000637100 ZNF320A2RRD8 509 aa12.18□□□□□ -0.46
CLN3-255ENST00000637100 J3QRK9 145 aa12.18□□□□□ -0.46
CLN3-255ENST00000637100 TSPAN4O14817 238 aa12.18□□□□□ -0.46
CLN3-255ENST00000637100 SPRY2O43597 315 aa12.18□□□□□ -0.46
CLN3-255ENST00000637100 HLA-GP17693 338 aa12.18□□□□□ -0.46
CLN3-255ENST00000637100 AQP4P55087 323 aa12.18□□□□□ -0.46
CLN3-255ENST00000637100 TIMM50Q3ZCQ8 353 aa12.18□□□□□ -0.46
CLN3-255ENST00000637100 OR2B11Q5JQS5 317 aa12.18□□□□□ -0.46
CLN3-255ENST00000637100 ZNF367Q7RTV3 350 aa12.18□□□□□ -0.46
CLN3-255ENST00000637100 OR1L6Q8NGR2 347 aa12.18□□□□□ -0.46
CLN3-255ENST00000637100 TCTEX1D2Q8WW35 142 aa12.18□□□□□ -0.46
CLN3-255ENST00000637100 NRG4Q8WWG1 115 aa12.18□□□□□ -0.46
CLN3-255ENST00000637100 RNF183Q96D59 192 aa12.18□□□□□ -0.46
CLN3-255ENST00000637100 AIFM2Q9BRQ8 373 aa12.18□□□□□ -0.46
CLN3-255ENST00000637100 ATG5Q9H1Y0 275 aa12.18□□□□□ -0.46
CLN3-255ENST00000637100 SELENOKQ9Y6D0 94 aa12.18□□□□□ -0.46
CLN3-255ENST00000637100 CXorf65A6NEN9 183 aa12.17□□□□□ -0.46
CLN3-255ENST00000637100 MYOD1P15172 320 aa12.17□□□□□ -0.46
CLN3-255ENST00000637100 APOC4P55056 127 aa12.17□□□□□ -0.46
CLN3-255ENST00000637100 ZNF773Q6PK81 442 aa12.17□□□□□ -0.46
CLN3-255ENST00000637100 ZBTB34Q8NCN2 500 aa12.17□□□□□ -0.46
CLN3-255ENST00000637100 VN1R17PQ8TDU5 208 aa12.17□□□□□ -0.46
CLN3-255ENST00000637100 SPATA2Q9UM82 520 aa12.17□□□□□ -0.46
CLN3-255ENST00000637100 UFC1Q9Y3C8 167 aa12.17□□□□□ -0.46
CLN3-255ENST00000637100 SCGNO76038 276 aa12.16□□□□□ -0.46
CLN3-255ENST00000637100 MYL9P24844 172 aa12.16□□□□□ -0.46
CLN3-255ENST00000637100 FGF9P31371 208 aaPredicted RBP12.16□□□□□ -0.46
CLN3-255ENST00000637100 ODF3L2Q3SX64 289 aa12.16□□□□□ -0.46
CLN3-255ENST00000637100 ZNF585BQ52M93 769 aa12.16□□□□□ -0.46
CLN3-255ENST00000637100 RBPMS2Q6ZRY4 209 aaKnown RBP12.16□□□□□ -0.46
CLN3-255ENST00000637100 SLC38A6Q8IZM9 456 aa12.16□□□□□ -0.46
CLN3-255ENST00000637100 CADM3Q8N126 398 aa12.16□□□□□ -0.46
CLN3-255ENST00000637100 NUDCD2Q8WVJ2 157 aa12.16□□□□□ -0.46
CLN3-255ENST00000637100 TMEM190Q8WZ59 177 aa12.16□□□□□ -0.46
CLN3-255ENST00000637100 CCDC90BQ9GZT6 254 aa12.16□□□□□ -0.46
CLN3-255ENST00000637100 TAS2R8Q9NYW2 309 aa12.16□□□□□ -0.46
CLN3-255ENST00000637100 TMEM235A6NFC5 223 aa12.15□□□□□ -0.46
CLN3-255ENST00000637100 NOTOA8MTQ0 251 aa12.15□□□□□ -0.46
CLN3-255ENST00000637100 UPK2O00526 184 aa12.15□□□□□ -0.46
CLN3-255ENST00000637100 DEFA4P12838 97 aa12.15□□□□□ -0.46
CLN3-255ENST00000637100 TAS2R31P59538 309 aa12.15□□□□□ -0.46
CLN3-255ENST00000637100 VPS13DQ5THJ4 4388 aa12.14□□□□□ -0.47
CLN3-255ENST00000637100 TRAV3A0A0B4J244 114 aa12.14□□□□□ -0.47
CLN3-255ENST00000637100 K7EMT4 169 aa12.14□□□□□ -0.47
CLN3-255ENST00000637100 TGOLN2O43493 480 aa12.14□□□□□ -0.47
CLN3-255ENST00000637100 REG1AP05451 166 aa12.14□□□□□ -0.47
CLN3-255ENST00000637100 GPR183P32249 361 aa12.14□□□□□ -0.47
CLN3-255ENST00000637100 PMS2P11Q13670 270 aa12.14□□□□□ -0.47
CLN3-255ENST00000637100 LGALS9CQ6DKI2 356 aa12.14□□□□□ -0.47
CLN3-255ENST00000637100 THOC7Q6I9Y2 204 aaKnown RBP12.14□□□□□ -0.47
CLN3-255ENST00000637100 PLET1Q6UQ28 207 aa12.14□□□□□ -0.47
CLN3-255ENST00000637100 SSX9Q7RTT3 188 aa12.14□□□□□ -0.47
CLN3-255ENST00000637100 ZNF414Q96IQ9 312 aa12.14□□□□□ -0.47
CLN3-255ENST00000637100 GPHA2Q96T91 129 aa12.14□□□□□ -0.47
CLN3-255ENST00000637100 CCL28Q9NRJ3 127 aa12.14□□□□□ -0.47
CLN3-255ENST00000637100 THYN1Q9P016 225 aa12.14□□□□□ -0.47
CLN3-255ENST00000637100 KLK5Q9Y337 293 aaPredicted RBP12.14□□□□□ -0.47
CLN3-255ENST00000637100 F8W735 103 aaPredicted RBP12.13□□□□□ -0.47
CLN3-255ENST00000637100 HPRT1P00492 218 aa12.13□□□□□ -0.47
CLN3-255ENST00000637100 DEFB135Q30KP9 77 aa12.13□□□□□ -0.47
CLN3-255ENST00000637100 C22orf42Q6IC83 251 aa12.13□□□□□ -0.47
CLN3-255ENST00000637100 TPRA1Q86W33 373 aa12.13□□□□□ -0.47
CLN3-255ENST00000637100 SPAG16Q8N0X2 631 aa12.13□□□□□ -0.47
CLN3-255ENST00000637100 RPP25LQ8N5L8 163 aaKnown RBP12.13□□□□□ -0.47
CLN3-255ENST00000637100 STPG3Q8N7X2 389 aa12.13□□□□□ -0.47
CLN3-255ENST00000637100 MAP6D1Q9H9H5 199 aa12.13□□□□□ -0.47
CLN3-255ENST00000637100 PLEKHA2Q9HB19 425 aa12.13□□□□□ -0.47
CLN3-255ENST00000637100 DAZ1Q9NQZ3 744 aaKnown RBP12.13□□□□□ -0.47
CLN3-255ENST00000637100 NDUFA4O00483 81 aa12.12□□□□□ -0.47
CLN3-255ENST00000637100 SERPINE2P07093 398 aa12.12□□□□□ -0.47
CLN3-255ENST00000637100 NQO2P16083 231 aa12.12□□□□□ -0.47
CLN3-255ENST00000637100 SCAND1P57086 179 aa12.12□□□□□ -0.47
CLN3-255ENST00000637100 SPSB3Q6PJ21 355 aa12.12□□□□□ -0.47
CLN3-255ENST00000637100 HSD17B13Q7Z5P4 300 aaPredicted RBP12.12□□□□□ -0.47
CLN3-255ENST00000637100 HOGA1Q86XE5 327 aa12.12□□□□□ -0.47
CLN3-255ENST00000637100 GDPD1Q8N9F7 314 aa12.12□□□□□ -0.47
CLN3-255ENST00000637100 GALNT14Q96FL9 552 aa12.12□□□□□ -0.47
CLN3-255ENST00000637100 BSCL2Q96G97 398 aaPredicted RBP12.12□□□□□ -0.47
CLN3-255ENST00000637100 MRPS14O60783 128 aaKnown RBP12.11□□□□□ -0.47
CLN3-255ENST00000637100 S1PR2O95136 353 aa12.11□□□□□ -0.47
CLN3-255ENST00000637100 PPYP01298 95 aa12.11□□□□□ -0.47
CLN3-255ENST00000637100 FCGR2CP31995 323 aa12.11□□□□□ -0.47
CLN3-255ENST00000637100 ADMP35318 185 aa12.11□□□□□ -0.47
CLN3-255ENST00000637100 GNG2P59768 71 aa12.11□□□□□ -0.47
CLN3-255ENST00000637100 WT1-ASQ06250 92 aa12.11□□□□□ -0.47
CLN3-255ENST00000637100 UBE2UQ5VVX9 321 aa12.11□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 12.7 ms