RNA–Protein interactions for RNA: ENST00000601689.1

UPF1-212, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 4

Gene UPF1, Length 561 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-212ENST00000601689 TTC9CQ8N5M4 171 aa15.03■□□□□ -0
UPF1-212ENST00000601689 SCGB3A2Q96PL1 93 aa15.03■□□□□ -0
UPF1-212ENST00000601689 PRRT1Q99946 306 aa15.03■□□□□ -0
UPF1-212ENST00000601689 RANGRFQ9HD47 186 aaPredicted RBP15.03■□□□□ -0
UPF1-212ENST00000601689 FKBP11Q9NYL4 201 aa15.03■□□□□ -0
UPF1-212ENST00000601689 C14orf166Q9Y224 244 aaKnown RBP15.03■□□□□ -0
UPF1-212ENST00000601689 ZNF257Q9Y2Q1 563 aa15.03■□□□□ -0
UPF1-212ENST00000601689 UPK2O00526 184 aa15.02■□□□□ -0
UPF1-212ENST00000601689 KRASP01116 189 aa15.02■□□□□ -0
UPF1-212ENST00000601689 DEFA4P12838 97 aa15.02■□□□□ -0
UPF1-212ENST00000601689 RPA2P15927 270 aa15.02■□□□□ -0
UPF1-212ENST00000601689 PPP5CP53041 499 aa15.02■□□□□ -0
UPF1-212ENST00000601689 PIGPP57054 158 aa15.02■□□□□ -0
UPF1-212ENST00000601689 AP3S2P59780 193 aa15.02■□□□□ -0
UPF1-212ENST00000601689 RND3P61587 244 aa15.02■□□□□ -0
UPF1-212ENST00000601689 MRGPRG-AS1Q2M3A8 158 aa15.02■□□□□ -0
UPF1-212ENST00000601689 PYDC2Q56P42 97 aa15.02■□□□□ -0
UPF1-212ENST00000601689 SPANXN2Q5MJ10 180 aa15.02■□□□□ -0
UPF1-212ENST00000601689 KPRPQ5T749 579 aaPredicted RBP15.02■□□□□ -0
UPF1-212ENST00000601689 LHFPL1Q86WI0 220 aa15.02■□□□□ -0
UPF1-212ENST00000601689 ADAD2Q8NCV1 583 aaKnown RBP15.02■□□□□ -0
UPF1-212ENST00000601689 RBM38Q9H0Z9 239 aaKnown RBP15.02■□□□□ -0
UPF1-212ENST00000601689 SCP2D1Q9UJQ7 156 aa15.02■□□□□ -0
UPF1-212ENST00000601689 FAM223BA6NKX1 122 aa15.01□□□□□ -0.01
UPF1-212ENST00000601689 B3GALNT1O75752 331 aa15.01□□□□□ -0.01
UPF1-212ENST00000601689 ZP3P21754 424 aa15.01□□□□□ -0.01
UPF1-212ENST00000601689 FHL3Q13643 280 aa15.01□□□□□ -0.01
UPF1-212ENST00000601689 ASPHD1Q5U4P2 390 aa15.01□□□□□ -0.01
UPF1-212ENST00000601689 FOXB2Q5VYV0 432 aa15.01□□□□□ -0.01
UPF1-212ENST00000601689 HSD17B13Q7Z5P4 300 aaPredicted RBP15.01□□□□□ -0.01
UPF1-212ENST00000601689 FAM223AQ8IWN6 122 aa15.01□□□□□ -0.01
UPF1-212ENST00000601689 CADM3Q8N126 398 aa15.01□□□□□ -0.01
UPF1-212ENST00000601689 SRSF8Q9BRL6 282 aaKnown RBP15.01□□□□□ -0.01
UPF1-212ENST00000601689 NPIPB5A8MRT5 1133 aa15□□□□□ -0.01
UPF1-212ENST00000601689 ZNF735P0CB33 412 aa15□□□□□ -0.01
UPF1-212ENST00000601689 HIST1H1BP16401 226 aaKnown RBP15□□□□□ -0.01
UPF1-212ENST00000601689 PTBP1P26599 531 aaKnown RBP eCLIP15□□□□□ -0.01
UPF1-212ENST00000601689 INSL3P51460 131 aa15□□□□□ -0.01
UPF1-212ENST00000601689 ATP5G2Q06055 141 aa15□□□□□ -0.01
UPF1-212ENST00000601689 SURF2Q15527 256 aaPredicted RBP15□□□□□ -0.01
UPF1-212ENST00000601689 TATDN3Q17R31 274 aa15□□□□□ -0.01
UPF1-212ENST00000601689 C10orf55Q5SWW7 151 aa15□□□□□ -0.01
UPF1-212ENST00000601689 H2BFWTQ7Z2G1 175 aa15□□□□□ -0.01
UPF1-212ENST00000601689 THAP7Q9BT49 309 aaPredicted RBP15□□□□□ -0.01
UPF1-212ENST00000601689 THYN1Q9P016 225 aa15□□□□□ -0.01
UPF1-212ENST00000601689 PRNDQ9UKY0 176 aa15□□□□□ -0.01
UPF1-212ENST00000601689 HMX3A6NHT5 357 aa14.99□□□□□ -0.01
UPF1-212ENST00000601689 SEC14L6B5MCN3 397 aa14.99□□□□□ -0.01
UPF1-212ENST00000601689 OVOL1O14753 267 aa14.99□□□□□ -0.01
UPF1-212ENST00000601689 G6PCP35575 357 aa14.99□□□□□ -0.01
UPF1-212ENST00000601689 PDLIM3Q53GG5 364 aaPredicted RBP14.99□□□□□ -0.01
UPF1-212ENST00000601689 NECAP1Q8NC96 275 aa14.99□□□□□ -0.01
UPF1-212ENST00000601689 OR4D10Q8NGI6 311 aa14.99□□□□□ -0.01
UPF1-212ENST00000601689 OR1L8Q8NGR8 309 aa14.99□□□□□ -0.01
UPF1-212ENST00000601689 QTRT1Q9BXR0 403 aaKnown RBP14.99□□□□□ -0.01
UPF1-212ENST00000601689 MCUBQ9NWR8 336 aa14.99□□□□□ -0.01
UPF1-212ENST00000601689 ANKRD20A5PA0PJZ0 165 aa14.98□□□□□ -0.01
UPF1-212ENST00000601689 H0Y980 276 aa14.98□□□□□ -0.01
UPF1-212ENST00000601689 RBMXL2O75526 392 aaKnown RBP14.98□□□□□ -0.01
UPF1-212ENST00000601689 CTSDP07339 412 aaPredicted RBP14.98□□□□□ -0.01
UPF1-212ENST00000601689 PSMB6P28072 239 aa14.98□□□□□ -0.01
UPF1-212ENST00000601689 INPP1P49441 399 aa14.98□□□□□ -0.01
UPF1-212ENST00000601689 RHOGP84095 191 aa14.98□□□□□ -0.01
UPF1-212ENST00000601689 TRIM16LQ309B1 348 aa14.98□□□□□ -0.01
UPF1-212ENST00000601689 ZNF585BQ52M93 769 aa14.98□□□□□ -0.01
UPF1-212ENST00000601689 Q8N402 240 aa14.98□□□□□ -0.01
UPF1-212ENST00000601689 TOMM5Q8N4H5 51 aa14.98□□□□□ -0.01
UPF1-212ENST00000601689 OR4C16Q8NGL9 310 aa14.98□□□□□ -0.01
UPF1-212ENST00000601689 OR4A16Q8NH70 328 aa14.98□□□□□ -0.01
UPF1-212ENST00000601689 MARCH1Q8TCQ1 289 aa14.98□□□□□ -0.01
UPF1-212ENST00000601689 TMEM56Q96MV1 263 aa14.98□□□□□ -0.01
UPF1-212ENST00000601689 ELOVL1Q9BW60 279 aa14.98□□□□□ -0.01
UPF1-212ENST00000601689 ALX4Q9H161 411 aaPredicted RBP14.98□□□□□ -0.01
UPF1-212ENST00000601689 PEF1Q9UBV8 284 aaKnown RBP14.98□□□□□ -0.01
UPF1-212ENST00000601689 IGHV4OR15-8A0A075B7B6 117 aa14.97□□□□□ -0.01
UPF1-212ENST00000601689 A0A087WW49 117 aa14.97□□□□□ -0.01
UPF1-212ENST00000601689 TEX13DA0A0J9YY54 714 aaPredicted RBP14.97□□□□□ -0.01
UPF1-212ENST00000601689 C3orf85A0A1B0GTC6 90 aa14.97□□□□□ -0.01
UPF1-212ENST00000601689 IL6RP08887 468 aaPredicted RBP14.97□□□□□ -0.01
UPF1-212ENST00000601689 TRAPPC2P0DI81 140 aa14.97□□□□□ -0.01
UPF1-212ENST00000601689 TRAPPC2BP0DI82 140 aa14.97□□□□□ -0.01
UPF1-212ENST00000601689 PI3P19957 117 aa14.97□□□□□ -0.01
UPF1-212ENST00000601689 OR13C8Q8NGS7 320 aa14.97□□□□□ -0.01
UPF1-212ENST00000601689 RNASE11Q8TAA1 199 aaKnown RBP14.97□□□□□ -0.01
UPF1-212ENST00000601689 DEDD2Q8WXF8 326 aa14.97□□□□□ -0.01
UPF1-212ENST00000601689 DCUN1D4Q92564 292 aa14.97□□□□□ -0.01
UPF1-212ENST00000601689 SOSTQ9BQB4 213 aa14.97□□□□□ -0.01
UPF1-212ENST00000601689 ANKRD34BA5PLL1 514 aa14.96□□□□□ -0.01
UPF1-212ENST00000601689 TEX22C9J3V5 150 aa14.96□□□□□ -0.01
UPF1-212ENST00000601689 CRYGCP07315 174 aa14.96□□□□□ -0.01
UPF1-212ENST00000601689 MECP2P51608 486 aaKnown RBP14.96□□□□□ -0.01
UPF1-212ENST00000601689 AKR1C2P52895 323 aa14.96□□□□□ -0.01
UPF1-212ENST00000601689 OR2B8PP59922 312 aa14.96□□□□□ -0.01
UPF1-212ENST00000601689 FAAP20Q6NZ36 180 aa14.96□□□□□ -0.01
UPF1-212ENST00000601689 ZNF343Q6P1L6 599 aa14.96□□□□□ -0.01
UPF1-212ENST00000601689 ZNF429Q86V71 674 aa14.96□□□□□ -0.01
UPF1-212ENST00000601689 OR5B3Q8NH48 314 aa14.96□□□□□ -0.01
UPF1-212ENST00000601689 HINT2Q9BX68 163 aa14.96□□□□□ -0.01
UPF1-212ENST00000601689 KCNIP3Q9Y2W7 256 aa14.96□□□□□ -0.01
UPF1-212ENST00000601689 OR51B2Q9Y5P1 312 aa14.96□□□□□ -0.01
Retrieved 100 of 20,778 RNA–protein pairs in 84.4 ms