RNA–Protein interactions for RNA: ENST00000572334.6

VPS53-213, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 5

Gene VPS53, Length 561 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-213ENST00000572334 ACTBP60709 375 aa5.2□□□□□ -1.58
VPS53-213ENST00000572334 FABP5Q01469 135 aa5.2□□□□□ -1.58
VPS53-213ENST00000572334 INSL4Q14641 139 aa5.2□□□□□ -1.58
VPS53-213ENST00000572334 P2RY14Q15391 338 aa5.2□□□□□ -1.58
VPS53-213ENST00000572334 TMEM30BQ3MIR4 351 aa5.2□□□□□ -1.58
VPS53-213ENST00000572334 ZNF260Q3ZCT1 412 aa5.2□□□□□ -1.58
VPS53-213ENST00000572334 RNASE10Q5GAN6 216 aaKnown RBP5.2□□□□□ -1.58
VPS53-213ENST00000572334 LY6G6FQ5SQ64 297 aa5.2□□□□□ -1.58
VPS53-213ENST00000572334 LCE2AQ5TA79 106 aaPredicted RBP5.2□□□□□ -1.58
VPS53-213ENST00000572334 SFXN4Q6P4A7 337 aa5.2□□□□□ -1.58
VPS53-213ENST00000572334 ZNF833PQ6ZTB9 187 aa5.2□□□□□ -1.58
VPS53-213ENST00000572334 ZNF546Q86UE3 836 aa5.2□□□□□ -1.58
VPS53-213ENST00000572334 PRR18Q8N4B5 295 aa5.2□□□□□ -1.58
VPS53-213ENST00000572334 KCNRGQ8N5I3 272 aa5.2□□□□□ -1.58
VPS53-213ENST00000572334 BPIFCQ8NFQ6 507 aa5.2□□□□□ -1.58
VPS53-213ENST00000572334 NPBQ8NG41 125 aa5.2□□□□□ -1.58
VPS53-213ENST00000572334 NEK7Q8TDX7 302 aa5.2□□□□□ -1.58
VPS53-213ENST00000572334 S100A16Q96FQ6 103 aaKnown RBP5.2□□□□□ -1.58
VPS53-213ENST00000572334 UBE2E2Q96LR5 201 aa5.2□□□□□ -1.58
VPS53-213ENST00000572334 DERL3Q96Q80 235 aa5.2□□□□□ -1.58
VPS53-213ENST00000572334 SULT4A1Q9BR01 284 aa5.2□□□□□ -1.58
VPS53-213ENST00000572334 KRTAP4-6Q9BYQ5 205 aa5.2□□□□□ -1.58
VPS53-213ENST00000572334 SELENOIQ9C0D9 397 aa5.2□□□□□ -1.58
VPS53-213ENST00000572334 TINAGL1Q9GZM7 467 aaPredicted RBP5.2□□□□□ -1.58
VPS53-213ENST00000572334 FXYD6Q9H0Q3 95 aa5.2□□□□□ -1.58
VPS53-213ENST00000572334 IFI27L2Q9H2X8 130 aa5.2□□□□□ -1.58
VPS53-213ENST00000572334 SMDT1Q9H4I9 107 aa5.2□□□□□ -1.58
VPS53-213ENST00000572334 SPACA1Q9HBV2 294 aa5.2□□□□□ -1.58
VPS53-213ENST00000572334 GNG12Q9UBI6 72 aa5.2□□□□□ -1.58
VPS53-213ENST00000572334 TRAPPC2LQ9UL33 140 aa5.2□□□□□ -1.58
VPS53-213ENST00000572334 ZNF256Q9Y2P7 627 aaPredicted RBP5.2□□□□□ -1.58
VPS53-213ENST00000572334 ETV7Q9Y603 341 aa5.2□□□□□ -1.58
VPS53-213ENST00000572334 SAA2-SAA4A0A096LPE2 208 aa5.19□□□□□ -1.58
VPS53-213ENST00000572334 A0A0A6YYD4 124 aa5.19□□□□□ -1.58
VPS53-213ENST00000572334 FAM74A7A6NL05 159 aa5.19□□□□□ -1.58
VPS53-213ENST00000572334 FCN1O00602 326 aa5.19□□□□□ -1.58
VPS53-213ENST00000572334 SPINT2O43291 252 aa5.19□□□□□ -1.58
VPS53-213ENST00000572334 YPEL1O60688 119 aa5.19□□□□□ -1.58
VPS53-213ENST00000572334 GGCTO75223 188 aaKnown RBP5.19□□□□□ -1.58
VPS53-213ENST00000572334 PDCD6O75340 191 aa5.19□□□□□ -1.58
VPS53-213ENST00000572334 PROP1O75360 226 aa5.19□□□□□ -1.58
VPS53-213ENST00000572334 CA11O75493 328 aa5.19□□□□□ -1.58
VPS53-213ENST00000572334 NDUFB6O95139 128 aa5.19□□□□□ -1.58
VPS53-213ENST00000572334 MAS1P04201 325 aa5.19□□□□□ -1.58
VPS53-213ENST00000572334 GLAP06280 429 aa5.19□□□□□ -1.58
VPS53-213ENST00000572334 PET100P0DJ07 73 aa5.19□□□□□ -1.58
VPS53-213ENST00000572334 SAA2P0DJI9 122 aaPredicted RBP5.19□□□□□ -1.58
VPS53-213ENST00000572334 CXCL2P19875 107 aa5.19□□□□□ -1.58
VPS53-213ENST00000572334 ANXA7P20073 488 aaKnown RBP5.19□□□□□ -1.58
VPS53-213ENST00000572334 FUT3P21217 361 aa5.19□□□□□ -1.58
VPS53-213ENST00000572334 VDAC1P21796 283 aa5.19□□□□□ -1.58
VPS53-213ENST00000572334 BLVRBP30043 206 aaPredicted RBP5.19□□□□□ -1.58
VPS53-213ENST00000572334 RAB9AP51151 201 aa5.19□□□□□ -1.58
VPS53-213ENST00000572334 SNRPEP62304 92 aaKnown RBP5.19□□□□□ -1.58
VPS53-213ENST00000572334 RPS25P62851 125 aaKnown RBP5.19□□□□□ -1.58
VPS53-213ENST00000572334 QRFPP83859 136 aa5.19□□□□□ -1.58
VPS53-213ENST00000572334 HTD2P86397 168 aa5.19□□□□□ -1.58
VPS53-213ENST00000572334 ZNF616Q08AN1 781 aa5.19□□□□□ -1.58
VPS53-213ENST00000572334 KLF9Q13886 244 aaPredicted RBP5.19□□□□□ -1.58
VPS53-213ENST00000572334 RHEBQ15382 184 aa5.19□□□□□ -1.58
VPS53-213ENST00000572334 MMDQ15546 238 aa5.19□□□□□ -1.58
VPS53-213ENST00000572334 C5orf64Q2M2E5 130 aa5.19□□□□□ -1.58
VPS53-213ENST00000572334 FAM74A3Q4VXF1 159 aa5.19□□□□□ -1.58
VPS53-213ENST00000572334 OR2B11Q5JQS5 317 aa5.19□□□□□ -1.58
VPS53-213ENST00000572334 FAM27D1Q5T7N8 215 aa5.19□□□□□ -1.58
VPS53-213ENST00000572334 ZNF660Q6AZW8 331 aaPredicted RBP5.19□□□□□ -1.58
VPS53-213ENST00000572334 OR10K2Q6IF99 312 aa5.19□□□□□ -1.58
VPS53-213ENST00000572334 ZNF880Q6PDB4 577 aa5.19□□□□□ -1.58
VPS53-213ENST00000572334 TRAT1Q6PIZ9 186 aa5.19□□□□□ -1.58
VPS53-213ENST00000572334 ACOT7LQ6ZUV0 252 aa5.19□□□□□ -1.58
VPS53-213ENST00000572334 SBSPONQ8IVN8 264 aa5.19□□□□□ -1.58
VPS53-213ENST00000572334 JAGN1Q8N5M9 183 aa5.19□□□□□ -1.58
VPS53-213ENST00000572334 OR1N2Q8NGR9 330 aa5.19□□□□□ -1.58
VPS53-213ENST00000572334 CASTOR1Q8WTX7 329 aa5.19□□□□□ -1.58
VPS53-213ENST00000572334 DCUN1D4Q92564 292 aa5.19□□□□□ -1.58
VPS53-213ENST00000572334 DLX4Q92988 240 aaPredicted RBP5.19□□□□□ -1.58
VPS53-213ENST00000572334 TMEM203Q969S6 136 aa5.19□□□□□ -1.58
VPS53-213ENST00000572334 YPEL2Q96QA6 119 aa5.19□□□□□ -1.58
VPS53-213ENST00000572334 OR5B12Q96R08 314 aa5.19□□□□□ -1.58
VPS53-213ENST00000572334 SLC25A21Q9BQT8 299 aaPredicted RBP5.19□□□□□ -1.58
VPS53-213ENST00000572334 C2orf88Q9BSF0 95 aa5.19□□□□□ -1.58
VPS53-213ENST00000572334 ABHD14AQ9BUJ0 271 aa5.19□□□□□ -1.58
VPS53-213ENST00000572334 PARP12Q9H0J9 701 aaKnown RBP5.19□□□□□ -1.58
VPS53-213ENST00000572334 KCNK15Q9H427 330 aa5.19□□□□□ -1.58
VPS53-213ENST00000572334 TREM1Q9NP99 234 aa5.19□□□□□ -1.58
VPS53-213ENST00000572334 OR2S2Q9NQN1 319 aa5.19□□□□□ -1.58
VPS53-213ENST00000572334 GAR1Q9NY12 217 aaKnown RBP5.19□□□□□ -1.58
VPS53-213ENST00000572334 JPT1Q9UK76 154 aa5.19□□□□□ -1.58
VPS53-213ENST00000572334 VSIG4Q9Y279 399 aa5.19□□□□□ -1.58
VPS53-213ENST00000572334 TMED3Q9Y3Q3 217 aa5.19□□□□□ -1.58
VPS53-213ENST00000572334 EPPK1P58107 5090 aaKnown RBP5.19□□□□□ -1.58
VPS53-213ENST00000572334 HYDINQ4G0P3 5121 aa5.18□□□□□ -1.58
VPS53-213ENST00000572334 TRAV41A0A0B4J266 112 aa5.18□□□□□ -1.58
VPS53-213ENST00000572334 C3orf84H3BNL1 204 aa5.18□□□□□ -1.58
VPS53-213ENST00000572334 TAAR5O14804 337 aa5.18□□□□□ -1.58
VPS53-213ENST00000572334 NBR2O15453 112 aa5.18□□□□□ -1.58
VPS53-213ENST00000572334 NAPSAO96009 420 aa5.18□□□□□ -1.58
VPS53-213ENST00000572334 OR8U8P0C7N1 319 aa5.18□□□□□ -1.58
VPS53-213ENST00000572334 CT45A6P0DMU7 189 aa5.18□□□□□ -1.58
VPS53-213ENST00000572334 CT45A5P0DMU8 189 aa5.18□□□□□ -1.58
Retrieved 100 of 20,778 RNA–protein pairs in 93.3 ms