RNA–Protein interactions for RNA: ENST00000514987.5

NUP54-217, Transcript of nucleoporin 54, humanhuman

TSL 2 BASIC

Gene NUP54, Length 1,563 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-217ENST00000514987 HOXA5P20719 270 aa12.18□□□□□ -0.46
NUP54-217ENST00000514987 RPL23P62829 140 aaKnown RBP12.18□□□□□ -0.46
NUP54-217ENST00000514987 SPACA3Q8IXA5 215 aa12.18□□□□□ -0.46
NUP54-217ENST00000514987 OR5B3Q8NH48 314 aa12.18□□□□□ -0.46
NUP54-217ENST00000514987 RND1Q92730 232 aa12.18□□□□□ -0.46
NUP54-217ENST00000514987 PLEKHA3Q9HB20 300 aa12.18□□□□□ -0.46
NUP54-217ENST00000514987 CADP27708 2225 aa12.17□□□□□ -0.46
NUP54-217ENST00000514987 J3QR06 171 aa12.17□□□□□ -0.46
NUP54-217ENST00000514987 K7ENP7 123 aa12.17□□□□□ -0.46
NUP54-217ENST00000514987 ATXN7O15265 892 aaPredicted RBP12.17□□□□□ -0.46
NUP54-217ENST00000514987 NDUFB3O43676 98 aa12.17□□□□□ -0.46
NUP54-217ENST00000514987 MT-CO2P00403 227 aa12.17□□□□□ -0.46
NUP54-217ENST00000514987 STAG3L2P0CL84 134 aa12.17□□□□□ -0.46
NUP54-217ENST00000514987 STAG3L3P0CL85 134 aa12.17□□□□□ -0.46
NUP54-217ENST00000514987 RPL29P47914 159 aaKnown RBP12.17□□□□□ -0.46
NUP54-217ENST00000514987 LRRC10Q5BKY1 277 aa12.17□□□□□ -0.46
NUP54-217ENST00000514987 UTF1Q5T230 341 aa12.17□□□□□ -0.46
NUP54-217ENST00000514987 TMEM170AQ8WVE7 144 aa12.17□□□□□ -0.46
NUP54-217ENST00000514987 OR5B12Q96R08 314 aa12.17□□□□□ -0.46
NUP54-217ENST00000514987 TMEM204Q9BSN7 226 aa12.17□□□□□ -0.46
NUP54-217ENST00000514987 CELSR3Q9NYQ7 3312 aa12.17□□□□□ -0.46
NUP54-217ENST00000514987 H7BYZ3 331 aa12.16□□□□□ -0.46
NUP54-217ENST00000514987 CA2P00918 260 aa12.16□□□□□ -0.46
NUP54-217ENST00000514987 RHOBP62745 196 aa12.16□□□□□ -0.46
NUP54-217ENST00000514987 TGIF2LYQ8IUE0 185 aa12.16□□□□□ -0.46
NUP54-217ENST00000514987 BTF3L4Q96K17 158 aa12.16□□□□□ -0.46
NUP54-217ENST00000514987 TMEM106BQ9NUM4 274 aa12.16□□□□□ -0.46
NUP54-217ENST00000514987 DOK5Q9P104 306 aa12.16□□□□□ -0.46
NUP54-217ENST00000514987 CUL9Q8IWT3 2517 aa12.15□□□□□ -0.46
NUP54-217ENST00000514987 ELOA3CA0A087WX78 387 aaPredicted RBP12.15□□□□□ -0.46
NUP54-217ENST00000514987 PCP4L1A6NKN8 68 aa12.15□□□□□ -0.46
NUP54-217ENST00000514987 TNFRSF13BO14836 293 aaPredicted RBP12.15□□□□□ -0.46
NUP54-217ENST00000514987 MMP23AO75900 390 aa12.15□□□□□ -0.46
NUP54-217ENST00000514987 CD99P14209 185 aa12.15□□□□□ -0.46
NUP54-217ENST00000514987 CDX1P47902 265 aaPredicted RBP12.15□□□□□ -0.46
NUP54-217ENST00000514987 C16orf82Q7Z2V1 217 aa12.15□□□□□ -0.46
NUP54-217ENST00000514987 LINC00311Q8N616 119 aa12.15□□□□□ -0.46
NUP54-217ENST00000514987 OR4A5Q8NH83 315 aa12.15□□□□□ -0.46
NUP54-217ENST00000514987 ZNF596Q8TC21 504 aa12.15□□□□□ -0.46
NUP54-217ENST00000514987 NEUROG1Q92886 237 aa12.15□□□□□ -0.46
NUP54-217ENST00000514987 RNASE6Q93091 150 aaKnown RBP12.15□□□□□ -0.46
NUP54-217ENST00000514987 SNRNP40Q96DI7 357 aaKnown RBP12.15□□□□□ -0.46
NUP54-217ENST00000514987 VKORC1Q9BQB6 163 aa12.15□□□□□ -0.46
NUP54-217ENST00000514987 PYGO2Q9BRQ0 406 aa12.15□□□□□ -0.46
NUP54-217ENST00000514987 LRFN3Q9BTN0 628 aa12.15□□□□□ -0.46
NUP54-217ENST00000514987 KAAG1Q9UBP8 84 aa12.15□□□□□ -0.46
NUP54-217ENST00000514987 CLN5O75503 358 aa12.14□□□□□ -0.47
NUP54-217ENST00000514987 PFN1P07737 140 aaKnown RBP12.14□□□□□ -0.47
NUP54-217ENST00000514987 SRP14P37108 136 aaKnown RBP12.14□□□□□ -0.47
NUP54-217ENST00000514987 B2MP61769 119 aa12.14□□□□□ -0.47
NUP54-217ENST00000514987 FOXC1Q12948 553 aa12.14□□□□□ -0.47
NUP54-217ENST00000514987 TMEM177Q53S58 311 aa12.14□□□□□ -0.47
NUP54-217ENST00000514987 C2orf83Q53S99 150 aa12.14□□□□□ -0.47
NUP54-217ENST00000514987 ARSJQ5FYB0 599 aaPredicted RBP12.14□□□□□ -0.47
NUP54-217ENST00000514987 NCMAPQ5T1S8 102 aa12.14□□□□□ -0.47
NUP54-217ENST00000514987 MIC13Q5XKP0 118 aa12.14□□□□□ -0.47
NUP54-217ENST00000514987 TMEM200BQ69YZ2 307 aa12.14□□□□□ -0.47
NUP54-217ENST00000514987 SPNS3Q6ZMD2 512 aa12.14□□□□□ -0.47
NUP54-217ENST00000514987 OR5AN1Q8NGI8 311 aa12.14□□□□□ -0.47
NUP54-217ENST00000514987 OR1L8Q8NGR8 309 aa12.14□□□□□ -0.47
NUP54-217ENST00000514987 GATAD1Q8WUU5 269 aa12.14□□□□□ -0.47
NUP54-217ENST00000514987 TMEM186Q96B77 213 aa12.14□□□□□ -0.47
NUP54-217ENST00000514987 SRD5A3Q9H8P0 318 aa12.14□□□□□ -0.47
NUP54-217ENST00000514987 CHODLQ9H9P2 273 aa12.14□□□□□ -0.47
NUP54-217ENST00000514987 PATZ1Q9HBE1 687 aaKnown RBP12.14□□□□□ -0.47
NUP54-217ENST00000514987 DYNLRB1Q9NP97 96 aa12.14□□□□□ -0.47
NUP54-217ENST00000514987 DCAF16Q9NXF7 216 aa12.14□□□□□ -0.47
NUP54-217ENST00000514987 TET2Q6N021 2002 aaPredicted RBP12.14□□□□□ -0.47
NUP54-217ENST00000514987 ZNF292O60281 2723 aa12.14□□□□□ -0.47
NUP54-217ENST00000514987 INS-IGF2F8WCM5 200 aa12.13□□□□□ -0.47
NUP54-217ENST00000514987 PPP1R2P9O14990 202 aa12.13□□□□□ -0.47
NUP54-217ENST00000514987 TRGC2P03986 189 aa12.13□□□□□ -0.47
NUP54-217ENST00000514987 NDUFA6P56556 154 aa12.13□□□□□ -0.47
NUP54-217ENST00000514987 EFNB3Q15768 340 aa12.13□□□□□ -0.47
NUP54-217ENST00000514987 CST9LP1Q5W188 147 aa12.13□□□□□ -0.47
NUP54-217ENST00000514987 TMEM144Q7Z5S9 345 aa12.13□□□□□ -0.47
NUP54-217ENST00000514987 VSTM2AQ8TAG5 236 aa12.13□□□□□ -0.47
NUP54-217ENST00000514987 SLC35E1Q96K37 410 aa12.13□□□□□ -0.47
NUP54-217ENST00000514987 WFIKKN1Q96NZ8 548 aa12.13□□□□□ -0.47
NUP54-217ENST00000514987 C19orf24Q9BVV8 132 aa12.13□□□□□ -0.47
NUP54-217ENST00000514987 HINT2Q9BX68 163 aa12.13□□□□□ -0.47
NUP54-217ENST00000514987 SH3BGRL2Q9UJC5 107 aa12.13□□□□□ -0.47
NUP54-217ENST00000514987 ARL2-SNX15V9GYD0 113 aa12.13□□□□□ -0.47
NUP54-217ENST00000514987 TEX50A0A1B0GTY4 177 aa12.13□□□□□ -0.47
NUP54-217ENST00000514987 HIST1H2BKO60814 126 aa12.13□□□□□ -0.47
NUP54-217ENST00000514987 HIST1H2BJP06899 126 aa12.13□□□□□ -0.47
NUP54-217ENST00000514987 ARL14EPLP0DKL9 152 aa12.13□□□□□ -0.47
NUP54-217ENST00000514987 USF1P22415 310 aaPredicted RBP12.13□□□□□ -0.47
NUP54-217ENST00000514987 HIST1H2BOP23527 126 aa12.13□□□□□ -0.47
NUP54-217ENST00000514987 HIST1H2BBP33778 126 aa12.13□□□□□ -0.47
NUP54-217ENST00000514987 GALR1P47211 349 aa12.13□□□□□ -0.47
NUP54-217ENST00000514987 CASP6P55212 293 aa12.13□□□□□ -0.47
NUP54-217ENST00000514987 HIST1H2BDP58876 126 aa12.13□□□□□ -0.47
NUP54-217ENST00000514987 HIST1H2BCP62807 126 aa12.13□□□□□ -0.47
NUP54-217ENST00000514987 HIST2H2BEQ16778 126 aa12.13□□□□□ -0.47
NUP54-217ENST00000514987 GCSAMLQ5JQS6 135 aa12.13□□□□□ -0.47
NUP54-217ENST00000514987 HIST2H2BFQ5QNW6 126 aaPredicted RBP12.13□□□□□ -0.47
NUP54-217ENST00000514987 PDPNQ86YL7 162 aa12.13□□□□□ -0.47
NUP54-217ENST00000514987 CCL17Q92583 94 aa12.13□□□□□ -0.47
NUP54-217ENST00000514987 HIST1H2BHQ93079 126 aa12.13□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 90.7 ms