RNA–Protein interactions for RNA: ENST00000509277.5

LIMCH1-209, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 2 BASIC

Gene LIMCH1, Length 3,474 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-209ENST00000509277 Q56UQ5 140 aa7.24□□□□□ -1.25
LIMCH1-209ENST00000509277 SAXO1Q8IYX7 474 aa7.24□□□□□ -1.25
LIMCH1-209ENST00000509277 BEND2Q8NDZ0 799 aa7.24□□□□□ -1.25
LIMCH1-209ENST00000509277 NUDT11Q96G61 164 aa7.24□□□□□ -1.25
LIMCH1-209ENST00000509277 MAP1LC3BQ9GZQ8 125 aa7.24□□□□□ -1.25
LIMCH1-209ENST00000509277 DYSFO75923 2080 aa7.23□□□□□ -1.25
LIMCH1-209ENST00000509277 A0A0A6YYD4 124 aa7.23□□□□□ -1.25
LIMCH1-209ENST00000509277 C17orf100A8MU93 164 aa7.23□□□□□ -1.25
LIMCH1-209ENST00000509277 J3QT63 122 aa7.23□□□□□ -1.25
LIMCH1-209ENST00000509277 TMPRSS2O15393 492 aa7.23□□□□□ -1.25
LIMCH1-209ENST00000509277 APOA2P02652 100 aa7.23□□□□□ -1.25
LIMCH1-209ENST00000509277 RPL19P84098 196 aaKnown RBP7.23□□□□□ -1.25
LIMCH1-209ENST00000509277 SSBP1Q04837 148 aaKnown RBP7.23□□□□□ -1.25
LIMCH1-209ENST00000509277 LCN12Q6JVE5 192 aa7.23□□□□□ -1.25
LIMCH1-209ENST00000509277 KCNIP4Q6PIL6 250 aa7.23□□□□□ -1.25
LIMCH1-209ENST00000509277 TMEM252Q8N6L7 170 aa7.23□□□□□ -1.25
LIMCH1-209ENST00000509277 ZNRF1Q8ND25 227 aa7.23□□□□□ -1.25
LIMCH1-209ENST00000509277 SGMS2Q8NHU3 365 aa7.23□□□□□ -1.25
LIMCH1-209ENST00000509277 CCL13Q99616 98 aa7.23□□□□□ -1.25
LIMCH1-209ENST00000509277 POLDIP2Q9Y2S7 368 aa7.23□□□□□ -1.25
LIMCH1-209ENST00000509277 BPNT1O95861 308 aa7.23□□□□□ -1.25
LIMCH1-209ENST00000509277 S100GP29377 79 aa7.23□□□□□ -1.25
LIMCH1-209ENST00000509277 SRSF1Q07955 248 aaKnown RBP eCLIP7.23□□□□□ -1.25
LIMCH1-209ENST00000509277 KRTAP27-1Q3LI81 207 aa7.23□□□□□ -1.25
LIMCH1-209ENST00000509277 ZNF672Q499Z4 452 aaPredicted RBP7.23□□□□□ -1.25
LIMCH1-209ENST00000509277 FAHD2BQ6P2I3 314 aaPredicted RBP7.23□□□□□ -1.25
LIMCH1-209ENST00000509277 RFESDQ8TAC1 157 aa7.23□□□□□ -1.25
LIMCH1-209ENST00000509277 FAHD2AQ96GK7 314 aa7.23□□□□□ -1.25
LIMCH1-209ENST00000509277 MS4A5Q9H3V2 200 aa7.23□□□□□ -1.25
LIMCH1-209ENST00000509277 WASHC3Q9Y3C0 194 aa7.23□□□□□ -1.25
LIMCH1-209ENST00000509277 ARL2-SNX15V9GYD0 113 aa7.23□□□□□ -1.25
LIMCH1-209ENST00000509277 M0QZK8 103 aa7.22□□□□□ -1.25
LIMCH1-209ENST00000509277 SH2D1BO14796 132 aa7.22□□□□□ -1.25
LIMCH1-209ENST00000509277 GNG7O60262 68 aa7.22□□□□□ -1.25
LIMCH1-209ENST00000509277 GGCTO75223 188 aaKnown RBP7.22□□□□□ -1.25
LIMCH1-209ENST00000509277 IGLV3-1P01715 115 aa7.22□□□□□ -1.25
LIMCH1-209ENST00000509277 HBE1P02100 147 aa7.22□□□□□ -1.25
LIMCH1-209ENST00000509277 GAPDHP04406 335 aaKnown RBP7.22□□□□□ -1.25
LIMCH1-209ENST00000509277 CRISP2P16562 243 aa7.22□□□□□ -1.25
LIMCH1-209ENST00000509277 IER3P46695 156 aa7.22□□□□□ -1.25
LIMCH1-209ENST00000509277 LYG1Q8N1E2 194 aa7.22□□□□□ -1.25
LIMCH1-209ENST00000509277 OR5AU1Q8NGC0 362 aa7.22□□□□□ -1.25
LIMCH1-209ENST00000509277 WFDC12Q8WWY7 111 aa7.22□□□□□ -1.25
LIMCH1-209ENST00000509277 HCFC1P51610 2035 aa7.22□□□□□ -1.25
LIMCH1-209ENST00000509277 TRBV6-7A0A0A0MS04 114 aa7.22□□□□□ -1.25
LIMCH1-209ENST00000509277 K7N7A8 449 aa7.22□□□□□ -1.25
LIMCH1-209ENST00000509277 FCN1O00602 326 aa7.22□□□□□ -1.25
LIMCH1-209ENST00000509277 PAGE4O60829 102 aa7.22□□□□□ -1.25
LIMCH1-209ENST00000509277 CLDN1O95832 211 aa7.22□□□□□ -1.25
LIMCH1-209ENST00000509277 IFNA1P01562 189 aa7.22□□□□□ -1.25
LIMCH1-209ENST00000509277 SERPINE2P07093 398 aa7.22□□□□□ -1.25
LIMCH1-209ENST00000509277 TNFRSF1AP19438 455 aa7.22□□□□□ -1.25
LIMCH1-209ENST00000509277 DTYMKP23919 212 aa7.22□□□□□ -1.25
LIMCH1-209ENST00000509277 LMO1P25800 156 aa7.22□□□□□ -1.25
LIMCH1-209ENST00000509277 PMELP40967 661 aa7.22□□□□□ -1.25
LIMCH1-209ENST00000509277 HTD2P86397 168 aa7.22□□□□□ -1.25
LIMCH1-209ENST00000509277 RELBQ01201 579 aa7.22□□□□□ -1.25
LIMCH1-209ENST00000509277 TPTE2P1Q5T6R2 138 aa7.22□□□□□ -1.25
LIMCH1-209ENST00000509277 ASPHD1Q5U4P2 390 aa7.22□□□□□ -1.25
LIMCH1-209ENST00000509277 DUX4L9Q6RFH8 374 aaPredicted RBP7.22□□□□□ -1.25
LIMCH1-209ENST00000509277 FGFRL1Q8N441 504 aa7.22□□□□□ -1.25
LIMCH1-209ENST00000509277 GCM1Q9NP62 436 aa7.22□□□□□ -1.25
LIMCH1-209ENST00000509277 METRNQ9UJH8 293 aa7.22□□□□□ -1.25
LIMCH1-209ENST00000509277 LRP5LA4QPB2 252 aa7.22□□□□□ -1.25
LIMCH1-209ENST00000509277 CHRM2P08172 466 aa7.22□□□□□ -1.25
LIMCH1-209ENST00000509277 BCL2P10415 239 aa7.22□□□□□ -1.25
LIMCH1-209ENST00000509277 PSG1P11464 419 aa7.22□□□□□ -1.25
LIMCH1-209ENST00000509277 TPPP2P59282 170 aa7.22□□□□□ -1.25
LIMCH1-209ENST00000509277 FBXL19-AS1Q494R0 122 aa7.22□□□□□ -1.25
LIMCH1-209ENST00000509277 C1orf100Q5SVJ3 147 aa7.22□□□□□ -1.25
LIMCH1-209ENST00000509277 C1orf194Q5T5A4 169 aa7.22□□□□□ -1.25
LIMCH1-209ENST00000509277 MBNL2Q5VZF2 373 aaKnown RBP7.22□□□□□ -1.25
LIMCH1-209ENST00000509277 PRR27Q6MZM9 219 aa7.22□□□□□ -1.25
LIMCH1-209ENST00000509277 ZNF738Q8NE65 137 aa7.22□□□□□ -1.25
LIMCH1-209ENST00000509277 A0A1B0GU03 582 aa7.21□□□□□ -1.25
LIMCH1-209ENST00000509277 LRRC30A6NM36 301 aa7.21□□□□□ -1.25
LIMCH1-209ENST00000509277 SERF1AO75920 110 aa7.21□□□□□ -1.25
LIMCH1-209ENST00000509277 LINC00614P0C842 121 aa7.21□□□□□ -1.25
LIMCH1-209ENST00000509277 KITLGP21583 273 aa7.21□□□□□ -1.25
LIMCH1-209ENST00000509277 COL8A2P25067 703 aa7.21□□□□□ -1.25
LIMCH1-209ENST00000509277 AESQ08117 197 aa7.21□□□□□ -1.25
LIMCH1-209ENST00000509277 WDR82Q6UXN9 313 aa7.21□□□□□ -1.25
LIMCH1-209ENST00000509277 CLDND2Q8NHS1 167 aa7.21□□□□□ -1.25
LIMCH1-209ENST00000509277 MRPL30Q8TCC3 161 aaKnown RBP7.21□□□□□ -1.25
LIMCH1-209ENST00000509277 FAM222BQ8WU58 562 aa7.21□□□□□ -1.25
LIMCH1-209ENST00000509277 C10orf35Q96D05 121 aa7.21□□□□□ -1.25
LIMCH1-209ENST00000509277 AP1S3Q96PC3 154 aa7.21□□□□□ -1.25
LIMCH1-209ENST00000509277 MCRIP2Q9BUT9 160 aaKnown RBP7.21□□□□□ -1.25
LIMCH1-209ENST00000509277 PARLQ9H300 379 aa7.21□□□□□ -1.25
LIMCH1-209ENST00000509277 SRD5A3Q9H8P0 318 aa7.21□□□□□ -1.25
LIMCH1-209ENST00000509277 ZNF586Q9NXT0 402 aa7.21□□□□□ -1.25
LIMCH1-209ENST00000509277 ZNF107Q9UII5 783 aaPredicted RBP7.21□□□□□ -1.25
LIMCH1-209ENST00000509277 TRAPPC2LQ9UL33 140 aa7.21□□□□□ -1.25
LIMCH1-209ENST00000509277 ZFP30Q9Y2G7 519 aa7.21□□□□□ -1.25
LIMCH1-209ENST00000509277 ITPR2Q14571 2701 aa7.21□□□□□ -1.25
LIMCH1-209ENST00000509277 CSMD2Q7Z408 3487 aa7.21□□□□□ -1.25
LIMCH1-209ENST00000509277 IGHV1-69-2A0A0G2JMI3 117 aa7.21□□□□□ -1.26
LIMCH1-209ENST00000509277 B9A039 149 aa7.21□□□□□ -1.26
LIMCH1-209ENST00000509277 F2Z2F3 143 aa7.21□□□□□ -1.26
LIMCH1-209ENST00000509277 SLC17A3O00476 420 aa7.21□□□□□ -1.26
Retrieved 100 of 20,778 RNA–protein pairs in 57.2 ms