RNA–Protein interactions for RNA: ENST00000471439.1

VPS13A-210, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

TSL 3

Gene VPS13A, Length 510 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-210ENST00000471439 AHSA1O95433 338 aa2.24□□□□□ -2.05
VPS13A-210ENST00000471439 RBP4P02753 201 aa2.24□□□□□ -2.05
VPS13A-210ENST00000471439 HMGN2P05204 90 aaKnown RBP2.24□□□□□ -2.05
VPS13A-210ENST00000471439 BCHEP06276 602 aa2.24□□□□□ -2.05
VPS13A-210ENST00000471439 SYCNQ0VAF6 134 aa2.24□□□□□ -2.05
VPS13A-210ENST00000471439 RGNQ15493 299 aa2.24□□□□□ -2.05
VPS13A-210ENST00000471439 LINC00483Q53H64 154 aa2.24□□□□□ -2.05
VPS13A-210ENST00000471439 AP1ARQ63HQ0 302 aa2.24□□□□□ -2.05
VPS13A-210ENST00000471439 HDDC2Q7Z4H3 204 aa2.24□□□□□ -2.05
VPS13A-210ENST00000471439 HMGN2P46Q86SG4 172 aa2.24□□□□□ -2.05
VPS13A-210ENST00000471439 CYP4Z1Q86W10 505 aa2.24□□□□□ -2.05
VPS13A-210ENST00000471439 CMTM1Q8IZ96 169 aa2.24□□□□□ -2.05
VPS13A-210ENST00000471439 ZNF676Q8N7Q3 588 aa2.24□□□□□ -2.05
VPS13A-210ENST00000471439 TCP10LQ8TDR4 215 aa2.24□□□□□ -2.05
VPS13A-210ENST00000471439 C16orf78Q8WTQ4 265 aa2.24□□□□□ -2.05
VPS13A-210ENST00000471439 SDF2Q99470 211 aa2.24□□□□□ -2.05
VPS13A-210ENST00000471439 FAM192AQ9GZU8 254 aa2.24□□□□□ -2.05
VPS13A-210ENST00000471439 RPP21Q9H633 154 aaKnown RBP2.24□□□□□ -2.05
VPS13A-210ENST00000471439 ZNF430Q9H8G1 570 aaPredicted RBP2.24□□□□□ -2.05
VPS13A-210ENST00000471439 WFDC1Q9HC57 220 aa2.24□□□□□ -2.05
VPS13A-210ENST00000471439 UVRAGQ9P2Y5 699 aa2.24□□□□□ -2.05
VPS13A-210ENST00000471439 SLC35A3Q9Y2D2 325 aa2.24□□□□□ -2.05
VPS13A-210ENST00000471439 ACOT9Q9Y305 439 aa2.24□□□□□ -2.05
VPS13A-210ENST00000471439 HMCN1Q96RW7 5635 aa2.23□□□□□ -2.05
VPS13A-210ENST00000471439 GNG14A0A1W2PPG7 69 aa2.23□□□□□ -2.05
VPS13A-210ENST00000471439 SMCO3A2RU48 225 aa2.23□□□□□ -2.05
VPS13A-210ENST00000471439 OR2AT4A6NND4 320 aa2.23□□□□□ -2.05
VPS13A-210ENST00000471439 BUB1B-PAK6H3BSN5 160 aa2.23□□□□□ -2.05
VPS13A-210ENST00000471439 TEX46H3BTG2 121 aa2.23□□□□□ -2.05
VPS13A-210ENST00000471439 RAB3DO95716 219 aa2.23□□□□□ -2.05
VPS13A-210ENST00000471439 HAND1O96004 215 aa2.23□□□□□ -2.05
VPS13A-210ENST00000471439 TRBV12-3P01733 135 aa2.23□□□□□ -2.05
VPS13A-210ENST00000471439 NQO1P15559 274 aaKnown RBP2.23□□□□□ -2.05
VPS13A-210ENST00000471439 CEACAM3P40198 252 aa2.23□□□□□ -2.05
VPS13A-210ENST00000471439 GPR4P46093 362 aa2.23□□□□□ -2.05
VPS13A-210ENST00000471439 MARCKSL1P49006 195 aa2.23□□□□□ -2.05
VPS13A-210ENST00000471439 RAP1AP62834 184 aa2.23□□□□□ -2.05
VPS13A-210ENST00000471439 C2orf80Q0P641 193 aa2.23□□□□□ -2.05
VPS13A-210ENST00000471439 ERCC8Q13216 396 aa2.23□□□□□ -2.05
VPS13A-210ENST00000471439 GINS1Q14691 196 aa2.23□□□□□ -2.05
VPS13A-210ENST00000471439 OR4D1Q15615 310 aa2.23□□□□□ -2.05
VPS13A-210ENST00000471439 ACOT6Q3I5F7 207 aaPredicted RBP2.23□□□□□ -2.05
VPS13A-210ENST00000471439 C22orf42Q6IC83 251 aa2.23□□□□□ -2.05
VPS13A-210ENST00000471439 REEP3Q6NUK4 255 aa2.23□□□□□ -2.05
VPS13A-210ENST00000471439 OR5L1Q8NGL2 311 aa2.23□□□□□ -2.05
VPS13A-210ENST00000471439 OR4A4PQ8NGN8 299 aa2.23□□□□□ -2.05
VPS13A-210ENST00000471439 SLC38A4Q969I6 547 aa2.23□□□□□ -2.05
VPS13A-210ENST00000471439 NAP1L5Q96NT1 182 aaPredicted RBP2.23□□□□□ -2.05
VPS13A-210ENST00000471439 BPIFA3Q9BQP9 254 aa2.23□□□□□ -2.05
VPS13A-210ENST00000471439 C20orf24Q9BUV8 137 aa2.23□□□□□ -2.05
VPS13A-210ENST00000471439 SLC25A2Q9BXI2 301 aa2.23□□□□□ -2.05
VPS13A-210ENST00000471439 WDR55Q9H6Y2 383 aaPredicted RBP2.23□□□□□ -2.05
VPS13A-210ENST00000471439 TAS2R7Q9NYW3 318 aa2.23□□□□□ -2.05
VPS13A-210ENST00000471439 CFAP45Q9UL16 551 aa2.23□□□□□ -2.05
VPS13A-210ENST00000471439 TIMM22Q9Y584 194 aa2.23□□□□□ -2.05
VPS13A-210ENST00000471439 YTHDF2Q9Y5A9 579 aaKnown RBP2.23□□□□□ -2.05
VPS13A-210ENST00000471439 A0A087WUJ7 227 aa2.22□□□□□ -2.05
VPS13A-210ENST00000471439 ZNF850A8MQ14 1090 aa2.22□□□□□ -2.05
VPS13A-210ENST00000471439 OOSP1A8MZH6 123 aa2.22□□□□□ -2.05
VPS13A-210ENST00000471439 L7N2F9 121 aa2.22□□□□□ -2.05
VPS13A-210ENST00000471439 FAAHO00519 579 aa2.22□□□□□ -2.05
VPS13A-210ENST00000471439 CDIPTO14735 213 aa2.22□□□□□ -2.05
VPS13A-210ENST00000471439 AKR7A2O43488 359 aa2.22□□□□□ -2.05
VPS13A-210ENST00000471439 MPZL2O60487 215 aa2.22□□□□□ -2.05
VPS13A-210ENST00000471439 WBP4O75554 376 aaKnown RBP2.22□□□□□ -2.05
VPS13A-210ENST00000471439 COX5BP10606 129 aa2.22□□□□□ -2.05
VPS13A-210ENST00000471439 TPPP2P59282 170 aa2.22□□□□□ -2.05
VPS13A-210ENST00000471439 LIPEQ05469 1076 aa2.22□□□□□ -2.05
VPS13A-210ENST00000471439 EIF4EBP1Q13541 118 aaPredicted RBP2.22□□□□□ -2.05
VPS13A-210ENST00000471439 MOBPQ13875 183 aa2.22□□□□□ -2.05
VPS13A-210ENST00000471439 DIAPH2-AS1Q14236 149 aa2.22□□□□□ -2.05
VPS13A-210ENST00000471439 HIST3H3Q16695 136 aa2.22□□□□□ -2.05
VPS13A-210ENST00000471439 RPEL1Q2QD12 228 aa2.22□□□□□ -2.05
VPS13A-210ENST00000471439 SPIN3Q5JUX0 258 aa2.22□□□□□ -2.05
VPS13A-210ENST00000471439 FAM27BQ5VT28 67 aa2.22□□□□□ -2.05
VPS13A-210ENST00000471439 NTM-AS1Q6ZSK4 140 aa2.22□□□□□ -2.05
VPS13A-210ENST00000471439 Q8N6K4 173 aa2.22□□□□□ -2.05
VPS13A-210ENST00000471439 CDC26Q8NHZ8 85 aa2.22□□□□□ -2.05
VPS13A-210ENST00000471439 CACNG8Q8WXS5 425 aa2.22□□□□□ -2.05
VPS13A-210ENST00000471439 SGTBQ96EQ0 304 aa2.22□□□□□ -2.05
VPS13A-210ENST00000471439 SLC25A44Q96H78 314 aaPredicted RBP2.22□□□□□ -2.05
VPS13A-210ENST00000471439 PRRC1Q96M27 445 aa2.22□□□□□ -2.05
VPS13A-210ENST00000471439 KRTAP4-1Q9BYQ7 146 aa2.22□□□□□ -2.05
VPS13A-210ENST00000471439 SLC22A4Q9H015 551 aa2.22□□□□□ -2.05
VPS13A-210ENST00000471439 SAV1Q9H4B6 383 aaPredicted RBP2.22□□□□□ -2.05
VPS13A-210ENST00000471439 NEK6Q9HC98 313 aa2.22□□□□□ -2.05
VPS13A-210ENST00000471439 PARP11Q9NR21 331 aa2.22□□□□□ -2.05
VPS13A-210ENST00000471439 LGALS13Q9UHV8 139 aa2.22□□□□□ -2.05
VPS13A-210ENST00000471439 VAX2Q9UIW0 290 aa2.22□□□□□ -2.05
VPS13A-210ENST00000471439 PYCARDQ9ULZ3 195 aa2.22□□□□□ -2.05
VPS13A-210ENST00000471439 A0A087X0T9 212 aa2.21□□□□□ -2.06
VPS13A-210ENST00000471439 TRBV9A0A0B4J1U6 114 aa2.21□□□□□ -2.06
VPS13A-210ENST00000471439 IGKV1D-43A0A0B4J1Z2 117 aa2.21□□□□□ -2.06
VPS13A-210ENST00000471439 TRAV3A0A0B4J244 114 aa2.21□□□□□ -2.06
VPS13A-210ENST00000471439 C2orf70A6NJV1 201 aa2.21□□□□□ -2.06
VPS13A-210ENST00000471439 SIRPB1O00241 398 aa2.21□□□□□ -2.06
VPS13A-210ENST00000471439 FKBP6O75344 327 aa2.21□□□□□ -2.06
VPS13A-210ENST00000471439 MED6O75586 246 aa2.21□□□□□ -2.06
VPS13A-210ENST00000471439 ZNF189O75820 626 aaPredicted RBP2.21□□□□□ -2.06
VPS13A-210ENST00000471439 KRT14P02533 472 aa2.21□□□□□ -2.06
Retrieved 100 of 20,778 RNA–protein pairs in 85.3 ms