RNA–Protein interactions for RNA: ENST00000461743.1

VPS52-213, Transcript of VPS52, GARP complex subunit, humanhuman

TSL 3

Gene VPS52, Length 547 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS52-213ENST00000461743 RUNX1Q01196 453 aa9.26□□□□□ -0.93
VPS52-213ENST00000461743 PJVKQ0ZLH3 352 aa9.26□□□□□ -0.93
VPS52-213ENST00000461743 SURF2Q15527 256 aaPredicted RBP9.26□□□□□ -0.93
VPS52-213ENST00000461743 TNXAQ16473 311 aa9.26□□□□□ -0.93
VPS52-213ENST00000461743 BAK1Q16611 211 aa9.26□□□□□ -0.93
VPS52-213ENST00000461743 MRGPRG-AS1Q2M3A8 158 aa9.26□□□□□ -0.93
VPS52-213ENST00000461743 CTRB2Q6GPI1 263 aa9.26□□□□□ -0.93
VPS52-213ENST00000461743 MZT2BQ6NZ67 158 aa9.26□□□□□ -0.93
VPS52-213ENST00000461743 LFNGQ8NES3 379 aa9.26□□□□□ -0.93
VPS52-213ENST00000461743 LRRC20Q8TCA0 184 aa9.26□□□□□ -0.93
VPS52-213ENST00000461743 SRSF12Q8WXF0 261 aaKnown RBP9.26□□□□□ -0.93
VPS52-213ENST00000461743 FYTTD1Q96QD9 318 aaKnown RBP9.26□□□□□ -0.93
VPS52-213ENST00000461743 SPIN2AQ99865 258 aa9.26□□□□□ -0.93
VPS52-213ENST00000461743 PRRT1Q99946 306 aa9.26□□□□□ -0.93
VPS52-213ENST00000461743 SPIN2BQ9BPZ2 258 aa9.26□□□□□ -0.93
VPS52-213ENST00000461743 SLC2A9Q9NRM0 540 aa9.26□□□□□ -0.93
VPS52-213ENST00000461743 SLC2A8Q9NY64 477 aa9.26□□□□□ -0.93
VPS52-213ENST00000461743 VSIG4Q9Y279 399 aa9.26□□□□□ -0.93
VPS52-213ENST00000461743 A0A0B4J293 547 aa9.25□□□□□ -0.93
VPS52-213ENST00000461743 ANKRD20A5PA0PJZ0 165 aa9.25□□□□□ -0.93
VPS52-213ENST00000461743 B3GALNT1O75752 331 aa9.25□□□□□ -0.93
VPS52-213ENST00000461743 DUS4LO95620 317 aaKnown RBP9.25□□□□□ -0.93
VPS52-213ENST00000461743 FAUP35544 74 aaKnown RBP9.25□□□□□ -0.93
VPS52-213ENST00000461743 MYCNOSP40205 109 aa9.25□□□□□ -0.93
VPS52-213ENST00000461743 RAB9AP51151 201 aa9.25□□□□□ -0.93
VPS52-213ENST00000461743 AP3S2P59780 193 aa9.25□□□□□ -0.93
VPS52-213ENST00000461743 ERVK-16P61578 105 aa9.25□□□□□ -0.93
VPS52-213ENST00000461743 RPL8P62917 257 aaKnown RBP9.25□□□□□ -0.93
VPS52-213ENST00000461743 TOR2AQ5JU69 321 aa9.25□□□□□ -0.93
VPS52-213ENST00000461743 HIST2H2BDQ6DRA6 164 aa9.25□□□□□ -0.93
VPS52-213ENST00000461743 OR4A47Q6IF82 309 aa9.25□□□□□ -0.93
VPS52-213ENST00000461743 ETV3LQ6ZN32 361 aa9.25□□□□□ -0.93
VPS52-213ENST00000461743 C8orf86Q6ZUL3 223 aa9.25□□□□□ -0.93
VPS52-213ENST00000461743 SLC25A42Q86VD7 318 aa9.25□□□□□ -0.93
VPS52-213ENST00000461743 ZNF491Q8N8L2 437 aa9.25□□□□□ -0.93
VPS52-213ENST00000461743 CCDC71LQ8N9Z2 235 aa9.25□□□□□ -0.93
VPS52-213ENST00000461743 OR4C16Q8NGL9 310 aa9.25□□□□□ -0.93
VPS52-213ENST00000461743 TERB2Q8NHR7 220 aa9.25□□□□□ -0.93
VPS52-213ENST00000461743 GPHA2Q96T91 129 aa9.25□□□□□ -0.93
VPS52-213ENST00000461743 PHB2Q99623 299 aa9.25□□□□□ -0.93
VPS52-213ENST00000461743 FAM103A1Q9BTL3 118 aaKnown RBP9.25□□□□□ -0.93
VPS52-213ENST00000461743 GPR61Q9BZJ8 451 aa9.25□□□□□ -0.93
VPS52-213ENST00000461743 MARCH11A6NNE9 402 aa9.24□□□□□ -0.93
VPS52-213ENST00000461743 H0Y980 276 aa9.24□□□□□ -0.93
VPS52-213ENST00000461743 SOX15O60248 233 aa9.24□□□□□ -0.93
VPS52-213ENST00000461743 S1PR2O95136 353 aa9.24□□□□□ -0.93
VPS52-213ENST00000461743 PGAM2P15259 253 aa9.24□□□□□ -0.93
VPS52-213ENST00000461743 RPA2P15927 270 aa9.24□□□□□ -0.93
VPS52-213ENST00000461743 CD33P20138 364 aa9.24□□□□□ -0.93
VPS52-213ENST00000461743 FHL3Q13643 280 aa9.24□□□□□ -0.93
VPS52-213ENST00000461743 PHLDA2Q53GA4 152 aa9.24□□□□□ -0.93
VPS52-213ENST00000461743 PLET1Q6UQ28 207 aa9.24□□□□□ -0.93
VPS52-213ENST00000461743 TBC1D26Q86UD7 250 aa9.24□□□□□ -0.93
VPS52-213ENST00000461743 LINC00482Q8N8I6 264 aa9.24□□□□□ -0.93
VPS52-213ENST00000461743 DUSP18Q8NEJ0 188 aa9.24□□□□□ -0.93
VPS52-213ENST00000461743 WFDC9Q8NEX5 89 aa9.24□□□□□ -0.93
VPS52-213ENST00000461743 OR4D10Q8NGI6 311 aa9.24□□□□□ -0.93
VPS52-213ENST00000461743 RCC1LQ96I51 464 aaKnown RBP9.24□□□□□ -0.93
VPS52-213ENST00000461743 HYLS1Q96M11 299 aa9.24□□□□□ -0.93
VPS52-213ENST00000461743 CITED4Q96RK1 184 aa9.24□□□□□ -0.93
VPS52-213ENST00000461743 P2RX4Q99571 388 aa9.24□□□□□ -0.93
VPS52-213ENST00000461743 TMEM140Q9NV12 185 aa9.24□□□□□ -0.93
VPS52-213ENST00000461743 SCP2D1Q9UJQ7 156 aa9.24□□□□□ -0.93
VPS52-213ENST00000461743 ALG5Q9Y673 324 aa9.24□□□□□ -0.93
VPS52-213ENST00000461743 A0A0G2JLM5 398 aa9.23□□□□□ -0.93
VPS52-213ENST00000461743 MPPED1O15442 326 aa9.23□□□□□ -0.93
VPS52-213ENST00000461743 CTSDP07339 412 aaPredicted RBP9.23□□□□□ -0.93
VPS52-213ENST00000461743 IL6RP08887 468 aaPredicted RBP9.23□□□□□ -0.93
VPS52-213ENST00000461743 OR9G9P0C7N8 305 aa9.23□□□□□ -0.93
VPS52-213ENST00000461743 ZNF735P0CB33 412 aa9.23□□□□□ -0.93
VPS52-213ENST00000461743 HLA-GP17693 338 aa9.23□□□□□ -0.93
VPS52-213ENST00000461743 RPL27AP46776 148 aaKnown RBP9.23□□□□□ -0.93
VPS52-213ENST00000461743 RRAS2P62070 204 aaPredicted RBP9.23□□□□□ -0.93
VPS52-213ENST00000461743 KIAA0141Q14154 515 aaPredicted RBP9.23□□□□□ -0.93
VPS52-213ENST00000461743 TATDN3Q17R31 274 aa9.23□□□□□ -0.93
VPS52-213ENST00000461743 SCGB2B2Q4G0G5 96 aa9.23□□□□□ -0.93
VPS52-213ENST00000461743 PYDC2Q56P42 97 aa9.23□□□□□ -0.93
VPS52-213ENST00000461743 ASPHD1Q5U4P2 390 aa9.23□□□□□ -0.93
VPS52-213ENST00000461743 FAM122CQ6P4D5 195 aa9.23□□□□□ -0.93
VPS52-213ENST00000461743 VKORC1L1Q8N0U8 176 aa9.23□□□□□ -0.93
VPS52-213ENST00000461743 Q8N402 240 aa9.23□□□□□ -0.93
VPS52-213ENST00000461743 DMBX1Q8NFW5 382 aa9.23□□□□□ -0.93
VPS52-213ENST00000461743 SRSF8Q9BRL6 282 aaKnown RBP9.23□□□□□ -0.93
VPS52-213ENST00000461743 MCRIP2Q9BUT9 160 aaKnown RBP9.23□□□□□ -0.93
VPS52-213ENST00000461743 ZNF257Q9Y2Q1 563 aa9.23□□□□□ -0.93
VPS52-213ENST00000461743 NPIPB5A8MRT5 1133 aa9.22□□□□□ -0.93
VPS52-213ENST00000461743 I3L521 148 aa9.22□□□□□ -0.93
VPS52-213ENST00000461743 CCL24O00175 119 aa9.22□□□□□ -0.93
VPS52-213ENST00000461743 ATG12O94817 140 aa9.22□□□□□ -0.93
VPS52-213ENST00000461743 TRGV3P03979 118 aa9.22□□□□□ -0.93
VPS52-213ENST00000461743 LGALS1P09382 135 aaKnown RBP9.22□□□□□ -0.93
VPS52-213ENST00000461743 OR8U8P0C7N1 319 aa9.22□□□□□ -0.93
VPS52-213ENST00000461743 PIGPP57054 158 aa9.22□□□□□ -0.93
VPS52-213ENST00000461743 TPPP2P59282 170 aa9.22□□□□□ -0.93
VPS52-213ENST00000461743 FAM209BQ5JX69 171 aa9.22□□□□□ -0.93
VPS52-213ENST00000461743 KPRPQ5T749 579 aaPredicted RBP9.22□□□□□ -0.93
VPS52-213ENST00000461743 SAMD5Q5TGI4 173 aa9.22□□□□□ -0.93
VPS52-213ENST00000461743 TRIQKQ629K1 86 aa9.22□□□□□ -0.93
VPS52-213ENST00000461743 LAMTOR1Q6IAA8 161 aa9.22□□□□□ -0.93
VPS52-213ENST00000461743 LCNL1Q6ZST4 164 aa9.22□□□□□ -0.93
Retrieved 100 of 20,778 RNA–protein pairs in 69.6 ms