RNA–Protein interactions for RNA: ENST00000448833.5

VPS41-208, Transcript of VPS41, HOPS complex subunit, humanhuman

TSL 1 (best)

Gene VPS41, Length 711 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-208ENST00000448833 OR5AP2Q8NGF4 316 aa5.36□□□□□ -1.55
VPS41-208ENST00000448833 OR1L6Q8NGR2 347 aa5.36□□□□□ -1.55
VPS41-208ENST00000448833 NUDCD2Q8WVJ2 157 aa5.36□□□□□ -1.55
VPS41-208ENST00000448833 SECTM1Q8WVN6 248 aa5.36□□□□□ -1.55
VPS41-208ENST00000448833 GIMAP1Q8WWP7 306 aa5.36□□□□□ -1.55
VPS41-208ENST00000448833 S100A16Q96FQ6 103 aaKnown RBP5.36□□□□□ -1.55
VPS41-208ENST00000448833 C5orf30Q96GV9 206 aa5.36□□□□□ -1.55
VPS41-208ENST00000448833 ATP6V0BQ99437 205 aa5.36□□□□□ -1.55
VPS41-208ENST00000448833 PLEKHA2Q9HB19 425 aa5.36□□□□□ -1.55
VPS41-208ENST00000448833 HRASLSQ9HDD0 168 aa5.36□□□□□ -1.55
VPS41-208ENST00000448833 ZC4H2Q9NQZ6 224 aa5.36□□□□□ -1.55
VPS41-208ENST00000448833 TAS2R8Q9NYW2 309 aa5.36□□□□□ -1.55
VPS41-208ENST00000448833 ELF5Q9UKW6 265 aaPredicted RBP5.36□□□□□ -1.55
VPS41-208ENST00000448833 DNAH7Q8WXX0 4024 aa5.36□□□□□ -1.55
VPS41-208ENST00000448833 IGKV1D-13A0A0B4J2D9 117 aa5.35□□□□□ -1.55
VPS41-208ENST00000448833 HMX3A6NHT5 357 aa5.35□□□□□ -1.55
VPS41-208ENST00000448833 ZNF785A8K8V0 405 aa5.35□□□□□ -1.55
VPS41-208ENST00000448833 A8MWP6 167 aa5.35□□□□□ -1.55
VPS41-208ENST00000448833 TEX22C9J3V5 150 aa5.35□□□□□ -1.55
VPS41-208ENST00000448833 JTBO76095 146 aa5.35□□□□□ -1.55
VPS41-208ENST00000448833 OR2C1O95371 312 aa5.35□□□□□ -1.55
VPS41-208ENST00000448833 PPYP01298 95 aa5.35□□□□□ -1.55
VPS41-208ENST00000448833 PRH1P02810 166 aa5.35□□□□□ -1.55
VPS41-208ENST00000448833 CLEC3BP05452 202 aa5.35□□□□□ -1.55
VPS41-208ENST00000448833 IL6RP08887 468 aaPredicted RBP5.35□□□□□ -1.55
VPS41-208ENST00000448833 IGKV1-13P0DP09 117 aa5.35□□□□□ -1.55
VPS41-208ENST00000448833 CTRB1P17538 263 aa5.35□□□□□ -1.55
VPS41-208ENST00000448833 HERV-K104P61576 105 aa5.35□□□□□ -1.55
VPS41-208ENST00000448833 ERVK-16P61578 105 aa5.35□□□□□ -1.55
VPS41-208ENST00000448833 MXD1Q05195 221 aa5.35□□□□□ -1.55
VPS41-208ENST00000448833 EIF4EBP1Q13541 118 aaPredicted RBP5.35□□□□□ -1.55
VPS41-208ENST00000448833 POU2AF1Q16633 256 aa5.35□□□□□ -1.55
VPS41-208ENST00000448833 IDNKQ5T6J7 187 aa5.35□□□□□ -1.55
VPS41-208ENST00000448833 ZNF57Q68EA5 555 aaPredicted RBP5.35□□□□□ -1.55
VPS41-208ENST00000448833 CTRB2Q6GPI1 263 aa5.35□□□□□ -1.55
VPS41-208ENST00000448833 LPCAT3Q6P1A2 487 aa5.35□□□□□ -1.55
VPS41-208ENST00000448833 ZNF773Q6PK81 442 aa5.35□□□□□ -1.55
VPS41-208ENST00000448833 CLEC19AQ6UXS0 136 aa5.35□□□□□ -1.55
VPS41-208ENST00000448833 LINC00322Q6ZN03 302 aaPredicted RBP5.35□□□□□ -1.55
VPS41-208ENST00000448833 RBPMS2Q6ZRY4 209 aaKnown RBP5.35□□□□□ -1.55
VPS41-208ENST00000448833 CMTM1Q8IZ96 169 aa5.35□□□□□ -1.55
VPS41-208ENST00000448833 SLC38A6Q8IZM9 456 aa5.35□□□□□ -1.55
VPS41-208ENST00000448833 VKORC1L1Q8N0U8 176 aa5.35□□□□□ -1.55
VPS41-208ENST00000448833 CADM3Q8N126 398 aa5.35□□□□□ -1.55
VPS41-208ENST00000448833 DMBX1Q8NFW5 382 aa5.35□□□□□ -1.55
VPS41-208ENST00000448833 OR13F1Q8NGS4 319 aa5.35□□□□□ -1.55
VPS41-208ENST00000448833 LGALS14Q8TCE9 139 aa5.35□□□□□ -1.55
VPS41-208ENST00000448833 SLC5A7Q9GZV3 580 aa5.35□□□□□ -1.55
VPS41-208ENST00000448833 HIPK2Q9H2X6 1198 aa5.35□□□□□ -1.55
VPS41-208ENST00000448833 VCX3AQ9NNX9 186 aa5.35□□□□□ -1.55
VPS41-208ENST00000448833 IFT46Q9NQC8 304 aa5.35□□□□□ -1.55
VPS41-208ENST00000448833 GAR1Q9NY12 217 aaKnown RBP5.35□□□□□ -1.55
VPS41-208ENST00000448833 FKBP11Q9NYL4 201 aa5.35□□□□□ -1.55
VPS41-208ENST00000448833 COMMD9Q9P000 198 aa5.35□□□□□ -1.55
VPS41-208ENST00000448833 MRPL27Q9P0M9 148 aaKnown RBP5.35□□□□□ -1.55
VPS41-208ENST00000448833 UFC1Q9Y3C8 167 aa5.35□□□□□ -1.55
VPS41-208ENST00000448833 LOC100506127A0A0U1RQW1 187 aa5.34□□□□□ -1.55
VPS41-208ENST00000448833 SMIM30A4D0T7 59 aa5.34□□□□□ -1.55
VPS41-208ENST00000448833 IZUMO1RA6ND01 250 aa5.34□□□□□ -1.55
VPS41-208ENST00000448833 PPP5D1E7EU14 171 aa5.34□□□□□ -1.55
VPS41-208ENST00000448833 SULT1C2O00338 296 aa5.34□□□□□ -1.55
VPS41-208ENST00000448833 XRCC3O43542 346 aa5.34□□□□□ -1.55
VPS41-208ENST00000448833 SSX5O60225 188 aa5.34□□□□□ -1.55
VPS41-208ENST00000448833 RBMXL2O75526 392 aaKnown RBP5.34□□□□□ -1.55
VPS41-208ENST00000448833 SNAPC5O75971 98 aa5.34□□□□□ -1.55
VPS41-208ENST00000448833 ATP6V1G2O95670 118 aa5.34□□□□□ -1.55
VPS41-208ENST00000448833 PTBP1P26599 531 aaKnown RBP eCLIP5.34□□□□□ -1.55
VPS41-208ENST00000448833 CMC4P56277 68 aaPredicted RBP5.34□□□□□ -1.55
VPS41-208ENST00000448833 TAS2R46P59540 309 aa5.34□□□□□ -1.55
VPS41-208ENST00000448833 DEFA5Q01523 94 aa5.34□□□□□ -1.55
VPS41-208ENST00000448833 C10orf55Q5SWW7 151 aa5.34□□□□□ -1.55
VPS41-208ENST00000448833 ZFAND6Q6FIF0 208 aa5.34□□□□□ -1.55
VPS41-208ENST00000448833 LAMTOR1Q6IAA8 161 aa5.34□□□□□ -1.55
VPS41-208ENST00000448833 SPSB3Q6PJ21 355 aa5.34□□□□□ -1.55
VPS41-208ENST00000448833 PLET1Q6UQ28 207 aa5.34□□□□□ -1.55
VPS41-208ENST00000448833 DHRS11Q6UWP2 260 aa5.34□□□□□ -1.55
VPS41-208ENST00000448833 SSX9Q7RTT3 188 aa5.34□□□□□ -1.55
VPS41-208ENST00000448833 TSPAN14Q8NG11 270 aa5.34□□□□□ -1.55
VPS41-208ENST00000448833 OR52B4Q8NGK2 314 aa5.34□□□□□ -1.55
VPS41-208ENST00000448833 VN1R17PQ8TDU5 208 aa5.34□□□□□ -1.55
VPS41-208ENST00000448833 TMEM56Q96MV1 263 aa5.34□□□□□ -1.55
VPS41-208ENST00000448833 FANCD2OSQ96PS1 177 aa5.34□□□□□ -1.55
VPS41-208ENST00000448833 QTRT1Q9BXR0 403 aaKnown RBP5.34□□□□□ -1.55
VPS41-208ENST00000448833 AUNIPQ9H7T9 357 aa5.34□□□□□ -1.55
VPS41-208ENST00000448833 SRD5A3Q9H8P0 318 aa5.34□□□□□ -1.55
VPS41-208ENST00000448833 PLEKHA3Q9HB20 300 aa5.34□□□□□ -1.55
VPS41-208ENST00000448833 CCL28Q9NRJ3 127 aa5.34□□□□□ -1.55
VPS41-208ENST00000448833 FAM212BQ9NTI7 297 aaPredicted RBP5.34□□□□□ -1.55
VPS41-208ENST00000448833 ADAM30Q9UKF2 790 aa5.34□□□□□ -1.55
VPS41-208ENST00000448833 DMRT1Q9Y5R6 373 aa5.34□□□□□ -1.55
VPS41-208ENST00000448833 HUWE1Q7Z6Z7 4374 aaKnown RBP5.34□□□□□ -1.55
VPS41-208ENST00000448833 IGLV11-55A0A075B6I3 123 aa5.33□□□□□ -1.56
VPS41-208ENST00000448833 LOC102724200A0A096LPH7 203 aaPredicted RBP5.33□□□□□ -1.56
VPS41-208ENST00000448833 SMIM31A0A1B0GVY4 71 aa5.33□□□□□ -1.56
VPS41-208ENST00000448833 KRTAP9-1A8MXZ3 250 aaPredicted RBP5.33□□□□□ -1.56
VPS41-208ENST00000448833 UPK2O00526 184 aa5.33□□□□□ -1.56
VPS41-208ENST00000448833 UBE2CO00762 179 aa5.33□□□□□ -1.56
VPS41-208ENST00000448833 NDUFB8O95169 186 aa5.33□□□□□ -1.56
VPS41-208ENST00000448833 SERPINE2P07093 398 aa5.33□□□□□ -1.56
VPS41-208ENST00000448833 TRAPPC2P0DI81 140 aa5.33□□□□□ -1.56
Retrieved 100 of 20,778 RNA–protein pairs in 48.2 ms