RNA–Protein interactions for RNA: ENST00000376854.5

C9orf40-201, Transcript of chromosome 9 open reading frame 40, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene C9orf40, Length 2,327 nt, Biotype protein coding, Subcellular localisation Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
C9orf40-201ENST00000376854 FAM201AQ5SY85 155 aa20.84■□□□□ 0.93
C9orf40-201ENST00000376854 TMEM144Q7Z5S9 345 aa20.84■□□□□ 0.93
C9orf40-201ENST00000376854 CT45A3Q8NHU0 189 aa20.84■□□□□ 0.93
C9orf40-201ENST00000376854 SFRP2Q96HF1 295 aa20.84■□□□□ 0.93
C9orf40-201ENST00000376854 IMMP2LQ96T52 175 aa20.84■□□□□ 0.93
C9orf40-201ENST00000376854 MGAQ8IWI9 3026 aa20.84■□□□□ 0.93
C9orf40-201ENST00000376854 TRBV20OR9-2A0A075B6H5 130 aa20.83■□□□□ 0.93
C9orf40-201ENST00000376854 IL6RP08887 468 aaPredicted RBP20.83■□□□□ 0.93
C9orf40-201ENST00000376854 ARSJQ5FYB0 599 aaPredicted RBP20.83■□□□□ 0.93
C9orf40-201ENST00000376854 ITLN1Q8WWA0 313 aa20.83■□□□□ 0.93
C9orf40-201ENST00000376854 SAA2-SAA4A0A096LPE2 208 aa20.83■□□□□ 0.92
C9orf40-201ENST00000376854 SCO2A0A1W2PP80 73 aa20.83■□□□□ 0.92
C9orf40-201ENST00000376854 SAA2P0DJI9 122 aaPredicted RBP20.83■□□□□ 0.92
C9orf40-201ENST00000376854 HEATR1Q9H583 2144 aaKnown RBP20.83■□□□□ 0.92
C9orf40-201ENST00000376854 ZNF292O60281 2723 aa20.83■□□□□ 0.92
C9orf40-201ENST00000376854 A0A087X0M5 115 aa20.82■□□□□ 0.92
C9orf40-201ENST00000376854 MDFIC2A0A1B0GVS7 189 aa20.82■□□□□ 0.92
C9orf40-201ENST00000376854 A0A1B0GX30 115 aa20.82■□□□□ 0.92
C9orf40-201ENST00000376854 MBD3L4A6NDZ8 208 aaPredicted RBP20.82■□□□□ 0.92
C9orf40-201ENST00000376854 MBD3L3A6NE82 208 aaPredicted RBP20.82■□□□□ 0.92
C9orf40-201ENST00000376854 MBD3L5A6NJ08 208 aaPredicted RBP20.82■□□□□ 0.92
C9orf40-201ENST00000376854 ITGB1BP1O14713 200 aa20.82■□□□□ 0.92
C9orf40-201ENST00000376854 CNN1P51911 297 aaKnown RBP20.82■□□□□ 0.92
C9orf40-201ENST00000376854 RPL15P61313 204 aaKnown RBP20.82■□□□□ 0.92
C9orf40-201ENST00000376854 FOXL1Q12952 345 aa20.82■□□□□ 0.92
C9orf40-201ENST00000376854 OR4A47Q6IF82 309 aa20.82■□□□□ 0.92
C9orf40-201ENST00000376854 SLC24A4Q8NFF2 622 aa20.82■□□□□ 0.92
C9orf40-201ENST00000376854 MBD3L2Q8NHZ7 208 aaPredicted RBP20.82■□□□□ 0.92
C9orf40-201ENST00000376854 BTF3L4Q96K17 158 aa20.82■□□□□ 0.92
C9orf40-201ENST00000376854 NPY1RP25929 384 aa20.82■□□□□ 0.92
C9orf40-201ENST00000376854 TEPPQ6URK8 271 aa20.82■□□□□ 0.92
C9orf40-201ENST00000376854 UNQ6494/PRO21346Q6UXR6 183 aa20.82■□□□□ 0.92
C9orf40-201ENST00000376854 SGMS2Q8NHU3 365 aa20.82■□□□□ 0.92
C9orf40-201ENST00000376854 FOXA2Q9Y261 457 aaPredicted RBP20.82■□□□□ 0.92
C9orf40-201ENST00000376854 YTHDF2Q9Y5A9 579 aaKnown RBP20.82■□□□□ 0.92
C9orf40-201ENST00000376854 TRAPPC1Q9Y5R8 145 aa20.82■□□□□ 0.92
C9orf40-201ENST00000376854 REC114Q7Z4M0 266 aa20.81■□□□□ 0.92
C9orf40-201ENST00000376854 RAB9BQ9NP90 201 aa20.81■□□□□ 0.92
C9orf40-201ENST00000376854 ENY2Q9NPA8 101 aa20.81■□□□□ 0.92
C9orf40-201ENST00000376854 TMEM14BQ9NUH8 114 aa20.81■□□□□ 0.92
C9orf40-201ENST00000376854 KBTBD11-OT1A0A1B0GTJ5 212 aa20.81■□□□□ 0.92
C9orf40-201ENST00000376854 GLRXP35754 106 aa20.81■□□□□ 0.92
C9orf40-201ENST00000376854 HSPE1P61604 102 aaKnown RBP20.81■□□□□ 0.92
C9orf40-201ENST00000376854 EFNB3Q15768 340 aa20.81■□□□□ 0.92
C9orf40-201ENST00000376854 STPG3Q8N7X2 389 aa20.81■□□□□ 0.92
C9orf40-201ENST00000376854 ZNF436-AS1Q8NC38 126 aaPredicted RBP20.81■□□□□ 0.92
C9orf40-201ENST00000376854 TMEM18Q96B42 140 aa20.81■□□□□ 0.92
C9orf40-201ENST00000376854 SEPSECSQ9HD40 501 aaKnown RBP20.81■□□□□ 0.92
C9orf40-201ENST00000376854 ZNF318Q5VUA4 2279 aa20.8■□□□□ 0.92
C9orf40-201ENST00000376854 AKAP13Q12802 2813 aa20.8■□□□□ 0.92
C9orf40-201ENST00000376854 GCGP01275 180 aa20.8■□□□□ 0.92
C9orf40-201ENST00000376854 GCHFRP30047 84 aa20.8■□□□□ 0.92
C9orf40-201ENST00000376854 THBS3P49746 956 aa20.8■□□□□ 0.92
C9orf40-201ENST00000376854 TIMM23BQ5SRD1 257 aa20.8■□□□□ 0.92
C9orf40-201ENST00000376854 NCOR1P1Q9H4R4 102 aa20.8■□□□□ 0.92
C9orf40-201ENST00000376854 SPATA31B1PQ5VZV4 182 aa20.79■□□□□ 0.92
C9orf40-201ENST00000376854 ZNF474Q6S9Z5 364 aaPredicted RBP20.79■□□□□ 0.92
C9orf40-201ENST00000376854 TET2Q6N021 2002 aaPredicted RBP20.79■□□□□ 0.92
C9orf40-201ENST00000376854 CA2P00918 260 aa20.79■□□□□ 0.92
C9orf40-201ENST00000376854 HNF1AP20823 631 aa20.79■□□□□ 0.92
C9orf40-201ENST00000376854 RHOBP62745 196 aa20.79■□□□□ 0.92
C9orf40-201ENST00000376854 DUX4L9Q6RFH8 374 aaPredicted RBP20.79■□□□□ 0.92
C9orf40-201ENST00000376854 LYG1Q8N1E2 194 aa20.79■□□□□ 0.92
C9orf40-201ENST00000376854 ELOVL5Q9NYP7 299 aa20.79■□□□□ 0.92
C9orf40-201ENST00000376854 TRGV10A0A0A0MS01 117 aa20.78■□□□□ 0.92
C9orf40-201ENST00000376854 ZNF705GA8MUZ8 300 aaPredicted RBP20.78■□□□□ 0.92
C9orf40-201ENST00000376854 MRPS11P82912 194 aaKnown RBP20.78■□□□□ 0.92
C9orf40-201ENST00000376854 RPRMLQ8N4K4 120 aa20.78■□□□□ 0.92
C9orf40-201ENST00000376854 OCC1Q8TAD7 63 aa20.78■□□□□ 0.92
C9orf40-201ENST00000376854 IDI2-AS1Q9NZ38 188 aa20.78■□□□□ 0.92
C9orf40-201ENST00000376854 PAX1P15863 534 aa20.78■□□□□ 0.92
C9orf40-201ENST00000376854 RAB31Q13636 194 aa20.78■□□□□ 0.92
C9orf40-201ENST00000376854 HINT2Q9BX68 163 aa20.78■□□□□ 0.92
C9orf40-201ENST00000376854 CADP27708 2225 aa20.78■□□□□ 0.92
C9orf40-201ENST00000376854 MKRN2OSH3BPM6 223 aa20.77■□□□□ 0.92
C9orf40-201ENST00000376854 MYOD1P15172 320 aa20.77■□□□□ 0.92
C9orf40-201ENST00000376854 CEACAM4O75871 244 aa20.77■□□□□ 0.92
C9orf40-201ENST00000376854 TIMP3P35625 211 aa20.77■□□□□ 0.92
C9orf40-201ENST00000376854 RPL29P47914 159 aaKnown RBP20.77■□□□□ 0.92
C9orf40-201ENST00000376854 MRPL41Q8IXM3 137 aaKnown RBP20.77■□□□□ 0.92
C9orf40-201ENST00000376854 ZNF664Q8N3J9 261 aa20.77■□□□□ 0.92
C9orf40-201ENST00000376854 GBGT1Q8N5D6 347 aa20.77■□□□□ 0.92
C9orf40-201ENST00000376854 FOXH1O75593 365 aa20.76■□□□□ 0.91
C9orf40-201ENST00000376854 TEX38Q6PEX7 206 aa20.76■□□□□ 0.91
C9orf40-201ENST00000376854 OR10G8Q8NGN5 311 aa20.76■□□□□ 0.91
C9orf40-201ENST00000376854 FAM222BQ8WU58 562 aa20.76■□□□□ 0.91
C9orf40-201ENST00000376854 ADTRPQ96IZ2 230 aa20.76■□□□□ 0.91
C9orf40-201ENST00000376854 OR51B2Q9Y5P1 312 aa20.76■□□□□ 0.91
C9orf40-201ENST00000376854 IGLV3-9A0A075B6K5 115 aa20.76■□□□□ 0.91
C9orf40-201ENST00000376854 CCKARP32238 428 aa20.76■□□□□ 0.91
C9orf40-201ENST00000376854 RPL31P62899 125 aaKnown RBP20.76■□□□□ 0.91
C9orf40-201ENST00000376854 CHODLQ9H9P2 273 aa20.76■□□□□ 0.91
C9orf40-201ENST00000376854 RNF7Q9UBF6 113 aa20.76■□□□□ 0.91
C9orf40-201ENST00000376854 MT-CO2P00403 227 aa20.75■□□□□ 0.91
C9orf40-201ENST00000376854 IGFBP2P18065 325 aa20.75■□□□□ 0.91
C9orf40-201ENST00000376854 COL8A2P25067 703 aa20.75■□□□□ 0.91
C9orf40-201ENST00000376854 GATA4P43694 442 aa20.75■□□□□ 0.91
C9orf40-201ENST00000376854 GNG10P50151 68 aa20.75■□□□□ 0.91
C9orf40-201ENST00000376854 ZADH2Q8N4Q0 377 aa20.75■□□□□ 0.91
C9orf40-201ENST00000376854 TCF23Q7RTU1 214 aa20.75■□□□□ 0.91
Retrieved 100 of 20,778 RNA–protein pairs in 71.1 ms