RNA–Protein interactions for RNA: ENST00000359902.2

CCDC88B-203, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 1 (best) BASIC

Gene CCDC88B, Length 2,326 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-203ENST00000359902 RPL23P62829 140 aaKnown RBP17.06■□□□□ 0.32
CCDC88B-203ENST00000359902 GGTLC1Q9BX51 225 aa17.06■□□□□ 0.32
CCDC88B-203ENST00000359902 PATZ1Q9HBE1 687 aaKnown RBP17.06■□□□□ 0.32
CCDC88B-203ENST00000359902 TRGC2P03986 189 aa17.05■□□□□ 0.32
CCDC88B-203ENST00000359902 IL6RP08887 468 aaPredicted RBP17.05■□□□□ 0.32
CCDC88B-203ENST00000359902 MYOD1P15172 320 aa17.05■□□□□ 0.32
CCDC88B-203ENST00000359902 BSXQ3C1V8 233 aa17.05■□□□□ 0.32
CCDC88B-203ENST00000359902 NEIL1Q96FI4 390 aaPredicted RBP17.05■□□□□ 0.32
CCDC88B-203ENST00000359902 SLC25A10Q9UBX3 287 aaPredicted RBP17.05■□□□□ 0.32
CCDC88B-203ENST00000359902 LSM4Q9Y4Z0 139 aaKnown RBP17.05■□□□□ 0.32
CCDC88B-203ENST00000359902 A0A1W2PPV4 95 aa17.05■□□□□ 0.32
CCDC88B-203ENST00000359902 NKX6-3A6NJ46 265 aa17.05■□□□□ 0.32
CCDC88B-203ENST00000359902 OPN1MWP04001 364 aa17.05■□□□□ 0.32
CCDC88B-203ENST00000359902 OPN1MW2P0DN77 364 aa17.05■□□□□ 0.32
CCDC88B-203ENST00000359902 OPN1MW3P0DN78 364 aa17.05■□□□□ 0.32
CCDC88B-203ENST00000359902 ARSJQ5FYB0 599 aaPredicted RBP17.05■□□□□ 0.32
CCDC88B-203ENST00000359902 NCMAPQ5T1S8 102 aa17.05■□□□□ 0.32
CCDC88B-203ENST00000359902 MIC13Q5XKP0 118 aa17.05■□□□□ 0.32
CCDC88B-203ENST00000359902 SLC24A4Q8NFF2 622 aa17.05■□□□□ 0.32
CCDC88B-203ENST00000359902 NPVFQ9HCQ7 196 aa17.05■□□□□ 0.32
CCDC88B-203ENST00000359902 PXMP4Q9Y6I8 212 aa17.05■□□□□ 0.32
CCDC88B-203ENST00000359902 C11orf94C9JXX5 98 aa17.04■□□□□ 0.32
CCDC88B-203ENST00000359902 FCN3O75636 299 aa17.04■□□□□ 0.32
CCDC88B-203ENST00000359902 HOXA5P20719 270 aa17.04■□□□□ 0.32
CCDC88B-203ENST00000359902 NPPCP23582 126 aa17.04■□□□□ 0.32
CCDC88B-203ENST00000359902 NPY1RP25929 384 aa17.04■□□□□ 0.32
CCDC88B-203ENST00000359902 OR13D1Q8NGV5 346 aa17.04■□□□□ 0.32
CCDC88B-203ENST00000359902 OR51B2Q9Y5P1 312 aa17.04■□□□□ 0.32
CCDC88B-203ENST00000359902 TRBV24-1A0A075B6N3 115 aa17.04■□□□□ 0.32
CCDC88B-203ENST00000359902 IGKV1-16P04430 117 aa17.04■□□□□ 0.32
CCDC88B-203ENST00000359902 S100PP25815 95 aa17.04■□□□□ 0.32
CCDC88B-203ENST00000359902 TBR1Q16650 682 aa17.04■□□□□ 0.32
CCDC88B-203ENST00000359902 SPACA3Q8IXA5 215 aa17.04■□□□□ 0.32
CCDC88B-203ENST00000359902 OR51M1Q9H341 326 aa17.04■□□□□ 0.32
CCDC88B-203ENST00000359902 DOK5Q9P104 306 aa17.04■□□□□ 0.32
CCDC88B-203ENST00000359902 DMXL2Q8TDJ6 3036 aa17.04■□□□□ 0.32
CCDC88B-203ENST00000359902 APC2O95996 2303 aa17.04■□□□□ 0.32
CCDC88B-203ENST00000359902 SRRM4A7MD48 611 aaKnown RBP17.03■□□□□ 0.32
CCDC88B-203ENST00000359902 HIST1H2BKO60814 126 aa17.03■□□□□ 0.32
CCDC88B-203ENST00000359902 CLN5O75503 358 aa17.03■□□□□ 0.32
CCDC88B-203ENST00000359902 CA2P00918 260 aa17.03■□□□□ 0.32
CCDC88B-203ENST00000359902 HIST1H2BJP06899 126 aa17.03■□□□□ 0.32
CCDC88B-203ENST00000359902 HIST1H2BOP23527 126 aa17.03■□□□□ 0.32
CCDC88B-203ENST00000359902 HIST1H2BBP33778 126 aa17.03■□□□□ 0.32
CCDC88B-203ENST00000359902 HIST1H2BDP58876 126 aa17.03■□□□□ 0.32
CCDC88B-203ENST00000359902 HIST1H2BCP62807 126 aa17.03■□□□□ 0.32
CCDC88B-203ENST00000359902 RPL31P62899 125 aaKnown RBP17.03■□□□□ 0.32
CCDC88B-203ENST00000359902 MEF2CQ06413 473 aaPredicted RBP17.03■□□□□ 0.32
CCDC88B-203ENST00000359902 HIST2H2BEQ16778 126 aa17.03■□□□□ 0.32
CCDC88B-203ENST00000359902 HIST2H2BFQ5QNW6 126 aaPredicted RBP17.03■□□□□ 0.32
CCDC88B-203ENST00000359902 ASCL5Q7RTU5 278 aa17.03■□□□□ 0.32
CCDC88B-203ENST00000359902 C16orf82Q7Z2V1 217 aa17.03■□□□□ 0.32
CCDC88B-203ENST00000359902 HIST1H2BHQ93079 126 aa17.03■□□□□ 0.32
CCDC88B-203ENST00000359902 HIST1H2BNQ99877 126 aa17.03■□□□□ 0.32
CCDC88B-203ENST00000359902 HIST1H2BMQ99879 126 aa17.03■□□□□ 0.32
CCDC88B-203ENST00000359902 ENY2Q9NPA8 101 aa17.03■□□□□ 0.32
CCDC88B-203ENST00000359902 SLC35D1Q9NTN3 355 aa17.03■□□□□ 0.32
CCDC88B-203ENST00000359902 NDUFA6P56556 154 aa17.03■□□□□ 0.32
CCDC88B-203ENST00000359902 PRR30Q53SZ7 412 aaPredicted RBP17.03■□□□□ 0.32
CCDC88B-203ENST00000359902 SAP30LQ9HAJ7 183 aa17.03■□□□□ 0.32
CCDC88B-203ENST00000359902 PRNDQ9UKY0 176 aa17.03■□□□□ 0.32
CCDC88B-203ENST00000359902 TMEM178BH3BS89 294 aa17.02■□□□□ 0.32
CCDC88B-203ENST00000359902 UPK2O00526 184 aa17.02■□□□□ 0.32
CCDC88B-203ENST00000359902 RTL8BQ17RB0 113 aa17.02■□□□□ 0.32
CCDC88B-203ENST00000359902 OR10A7Q8NGE5 316 aa17.02■□□□□ 0.32
CCDC88B-203ENST00000359902 HINT2Q9BX68 163 aa17.02■□□□□ 0.32
CCDC88B-203ENST00000359902 GAL3ST2Q9H3Q3 398 aa17.02■□□□□ 0.32
CCDC88B-203ENST00000359902 SSMEM1Q8WWF3 244 aa17.02■□□□□ 0.31
CCDC88B-203ENST00000359902 PPIAL4EA0A075B759 164 aa17.01■□□□□ 0.31
CCDC88B-203ENST00000359902 PPIAL4DF5H284 164 aa17.01■□□□□ 0.31
CCDC88B-203ENST00000359902 J3QR06 171 aa17.01■□□□□ 0.31
CCDC88B-203ENST00000359902 PFN1P07737 140 aaKnown RBP17.01■□□□□ 0.31
CCDC88B-203ENST00000359902 PPIAL4FP0DN26 164 aa17.01■□□□□ 0.31
CCDC88B-203ENST00000359902 CCL3L1P16619 93 aa17.01■□□□□ 0.31
CCDC88B-203ENST00000359902 UBE2G2P60604 165 aa17.01■□□□□ 0.31
CCDC88B-203ENST00000359902 FOXC1Q12948 553 aa17.01■□□□□ 0.31
CCDC88B-203ENST00000359902 TMEM200BQ69YZ2 307 aa17.01■□□□□ 0.31
CCDC88B-203ENST00000359902 ZNF833PQ6ZTB9 187 aa17.01■□□□□ 0.31
CCDC88B-203ENST00000359902 SSX8Q7RTT4 187 aa17.01■□□□□ 0.31
CCDC88B-203ENST00000359902 ABHD5Q8WTS1 349 aa17.01■□□□□ 0.31
CCDC88B-203ENST00000359902 WFIKKN1Q96NZ8 548 aa17.01■□□□□ 0.31
CCDC88B-203ENST00000359902 ZNF257Q9Y2Q1 563 aa17.01■□□□□ 0.31
CCDC88B-203ENST00000359902 PPIAL4AQ9Y536 164 aa17.01■□□□□ 0.31
CCDC88B-203ENST00000359902 SMG1Q96Q15 3661 aaKnown RBP17.01■□□□□ 0.31
CCDC88B-203ENST00000359902 PIEZO2Q9H5I5 2752 aa17.01■□□□□ 0.31
CCDC88B-203ENST00000359902 PCNX1Q96RV3 2341 aa17.01■□□□□ 0.31
CCDC88B-203ENST00000359902 ROS1P08922 2347 aa17.01■□□□□ 0.31
CCDC88B-203ENST00000359902 STAG3L2P0CL84 134 aa17.01■□□□□ 0.31
CCDC88B-203ENST00000359902 STAG3L3P0CL85 134 aa17.01■□□□□ 0.31
CCDC88B-203ENST00000359902 TEPPQ6URK8 271 aa17.01■□□□□ 0.31
CCDC88B-203ENST00000359902 OR51G1Q8NGK1 321 aa17.01■□□□□ 0.31
CCDC88B-203ENST00000359902 LRFN3Q9BTN0 628 aa17.01■□□□□ 0.31
CCDC88B-203ENST00000359902 MIOXQ9UGB7 285 aa17.01■□□□□ 0.31
CCDC88B-203ENST00000359902 SPTBN2O15020 2390 aa17■□□□□ 0.31
CCDC88B-203ENST00000359902 TNFRSF13BO14836 293 aaPredicted RBP17■□□□□ 0.31
CCDC88B-203ENST00000359902 PDE6DO43924 150 aa17■□□□□ 0.31
CCDC88B-203ENST00000359902 ARL14EPLP0DKL9 152 aa17■□□□□ 0.31
CCDC88B-203ENST00000359902 ATP5G3P48201 142 aa17■□□□□ 0.31
CCDC88B-203ENST00000359902 CST9LP1Q5W188 147 aa17■□□□□ 0.31
CCDC88B-203ENST00000359902 CCL17Q92583 94 aa17■□□□□ 0.31
Retrieved 100 of 20,778 RNA–protein pairs in 51.9 ms