RNA–Protein interactions for RNA: ENST00000238112.7

CPSF3-201, Transcript of cleavage and polyadenylation specific factor 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CPSF3, Length 2,345 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF3-201ENST00000238112 MT-CO2P00403 227 aa15.42■□□□□ 0.06
CPSF3-201ENST00000238112 SAA2P0DJI9 122 aaPredicted RBP15.42■□□□□ 0.06
CPSF3-201ENST00000238112 GCHFRP30047 84 aa15.42■□□□□ 0.06
CPSF3-201ENST00000238112 EFNB3Q15768 340 aa15.42■□□□□ 0.06
CPSF3-201ENST00000238112 C17orf58Q2M2W7 97 aa15.42■□□□□ 0.06
CPSF3-201ENST00000238112 CT45A1Q5HYN5 189 aa15.42■□□□□ 0.06
CPSF3-201ENST00000238112 STPG3Q8N7X2 389 aa15.42■□□□□ 0.06
CPSF3-201ENST00000238112 ZNF436-AS1Q8NC38 126 aaPredicted RBP15.42■□□□□ 0.06
CPSF3-201ENST00000238112 CT45A3Q8NHU0 189 aa15.42■□□□□ 0.06
CPSF3-201ENST00000238112 ITLN1Q8WWA0 313 aa15.42■□□□□ 0.06
CPSF3-201ENST00000238112 YTHDF2Q9Y5A9 579 aaKnown RBP15.42■□□□□ 0.06
CPSF3-201ENST00000238112 LHBP01229 141 aa15.42■□□□□ 0.06
CPSF3-201ENST00000238112 SELLP14151 372 aa15.42■□□□□ 0.06
CPSF3-201ENST00000238112 WT1P19544 449 aaPredicted RBP15.42■□□□□ 0.06
CPSF3-201ENST00000238112 HNF1AP20823 631 aa15.42■□□□□ 0.06
CPSF3-201ENST00000238112 THBS3P49746 956 aa15.42■□□□□ 0.06
CPSF3-201ENST00000238112 HSPE1P61604 102 aaKnown RBP15.42■□□□□ 0.06
CPSF3-201ENST00000238112 UTF1Q5T230 341 aa15.42■□□□□ 0.06
CPSF3-201ENST00000238112 HEATR1Q9H583 2144 aaKnown RBP15.42■□□□□ 0.06
CPSF3-201ENST00000238112 CHODLQ9H9P2 273 aa15.42■□□□□ 0.06
CPSF3-201ENST00000238112 TMEM14BQ9NUH8 114 aa15.42■□□□□ 0.06
CPSF3-201ENST00000238112 ELOVL5Q9NYP7 299 aa15.42■□□□□ 0.06
CPSF3-201ENST00000238112 KBTBD11-OT1A0A1B0GTJ5 212 aa15.41■□□□□ 0.06
CPSF3-201ENST00000238112 CGB3P0DN86 165 aa15.41■□□□□ 0.06
CPSF3-201ENST00000238112 CGB7P0DN87 165 aa15.41■□□□□ 0.06
CPSF3-201ENST00000238112 ZNF600Q6ZNG1 722 aa15.41■□□□□ 0.06
CPSF3-201ENST00000238112 C1orf159Q96HA4 380 aa15.41■□□□□ 0.06
CPSF3-201ENST00000238112 NOL4LQ96MY1 436 aaPredicted RBP15.41■□□□□ 0.06
CPSF3-201ENST00000238112 SEPSECSQ9HD40 501 aaKnown RBP15.41■□□□□ 0.06
CPSF3-201ENST00000238112 TRGV10A0A0A0MS01 117 aa15.4■□□□□ 0.06
CPSF3-201ENST00000238112 MBD3L4A6NDZ8 208 aaPredicted RBP15.4■□□□□ 0.06
CPSF3-201ENST00000238112 MBD3L3A6NE82 208 aaPredicted RBP15.4■□□□□ 0.06
CPSF3-201ENST00000238112 MBD3L5A6NJ08 208 aaPredicted RBP15.4■□□□□ 0.06
CPSF3-201ENST00000238112 PAX1P15863 534 aa15.4■□□□□ 0.06
CPSF3-201ENST00000238112 FAM201AQ5SY85 155 aa15.4■□□□□ 0.06
CPSF3-201ENST00000238112 SEM1Q6ZVN7 128 aa15.4■□□□□ 0.06
CPSF3-201ENST00000238112 LYG1Q8N1E2 194 aa15.4■□□□□ 0.06
CPSF3-201ENST00000238112 ZNF664Q8N3J9 261 aa15.4■□□□□ 0.06
CPSF3-201ENST00000238112 GBGT1Q8N5D6 347 aa15.4■□□□□ 0.06
CPSF3-201ENST00000238112 OR10G8Q8NGN5 311 aa15.4■□□□□ 0.06
CPSF3-201ENST00000238112 MBD3L2Q8NHZ7 208 aaPredicted RBP15.4■□□□□ 0.06
CPSF3-201ENST00000238112 HINT2Q9BX68 163 aa15.4■□□□□ 0.06
CPSF3-201ENST00000238112 NCOR1P1Q9H4R4 102 aa15.4■□□□□ 0.06
CPSF3-201ENST00000238112 INTS1Q8N201 2190 aaKnown RBP15.4■□□□□ 0.06
CPSF3-201ENST00000238112 CA2P00918 260 aa15.4■□□□□ 0.06
CPSF3-201ENST00000238112 TIMP3P35625 211 aa15.4■□□□□ 0.06
CPSF3-201ENST00000238112 GLRXP35754 106 aa15.4■□□□□ 0.06
CPSF3-201ENST00000238112 MRPS11P82912 194 aaKnown RBP15.4■□□□□ 0.06
CPSF3-201ENST00000238112 DEFB109BQ30KR1 87 aa15.4■□□□□ 0.06
CPSF3-201ENST00000238112 TIMM23BQ5SRD1 257 aa15.4■□□□□ 0.06
CPSF3-201ENST00000238112 OCC1Q8TAD7 63 aa15.4■□□□□ 0.06
CPSF3-201ENST00000238112 ADTRPQ96IZ2 230 aa15.4■□□□□ 0.06
CPSF3-201ENST00000238112 RPL29P47914 159 aaKnown RBP15.39■□□□□ 0.05
CPSF3-201ENST00000238112 RPL31P62899 125 aaKnown RBP15.39■□□□□ 0.05
CPSF3-201ENST00000238112 SPATA31B1PQ5VZV4 182 aa15.39■□□□□ 0.05
CPSF3-201ENST00000238112 TEX38Q6PEX7 206 aa15.39■□□□□ 0.05
CPSF3-201ENST00000238112 ASCL3Q9NQ33 180 aa15.39■□□□□ 0.05
CPSF3-201ENST00000238112 IDI2-AS1Q9NZ38 188 aa15.39■□□□□ 0.05
CPSF3-201ENST00000238112 TP53TG5Q9Y2B4 290 aa15.39■□□□□ 0.05
CPSF3-201ENST00000238112 CORO2AQ92828 525 aa15.39■□□□□ 0.05
CPSF3-201ENST00000238112 UHRF2Q96PU4 802 aa15.39■□□□□ 0.05
CPSF3-201ENST00000238112 A8MWP6 167 aa15.38■□□□□ 0.05
CPSF3-201ENST00000238112 IQCJQ1A5X6 159 aa15.38■□□□□ 0.05
CPSF3-201ENST00000238112 OR4P4Q8NGL7 312 aa15.38■□□□□ 0.05
CPSF3-201ENST00000238112 OR51B2Q9Y5P1 312 aa15.38■□□□□ 0.05
CPSF3-201ENST00000238112 TET2Q6N021 2002 aaPredicted RBP15.38■□□□□ 0.05
CPSF3-201ENST00000238112 FTH1P19P0C7X4 201 aa15.38■□□□□ 0.05
CPSF3-201ENST00000238112 IGFBP2P18065 325 aa15.38■□□□□ 0.05
CPSF3-201ENST00000238112 GNG10P50151 68 aa15.38■□□□□ 0.05
CPSF3-201ENST00000238112 DEFB124Q8NES8 71 aa15.38■□□□□ 0.05
CPSF3-201ENST00000238112 RNF7Q9UBF6 113 aa15.38■□□□□ 0.05
CPSF3-201ENST00000238112 LOC400499M0QZD8 3231 aa15.38■□□□□ 0.05
CPSF3-201ENST00000238112 FOXH1O75593 365 aa15.37■□□□□ 0.05
CPSF3-201ENST00000238112 ZNF90Q03938 601 aa15.37■□□□□ 0.05
CPSF3-201ENST00000238112 ZNF474Q6S9Z5 364 aaPredicted RBP15.37■□□□□ 0.05
CPSF3-201ENST00000238112 TCF23Q7RTU1 214 aa15.37■□□□□ 0.05
CPSF3-201ENST00000238112 WFIKKN1Q96NZ8 548 aa15.37■□□□□ 0.05
CPSF3-201ENST00000238112 PRNDQ9UKY0 176 aa15.37■□□□□ 0.05
CPSF3-201ENST00000238112 SPAARA0A1B0GVQ0 90 aa15.37■□□□□ 0.05
CPSF3-201ENST00000238112 DUX4L9Q6RFH8 374 aaPredicted RBP15.37■□□□□ 0.05
CPSF3-201ENST00000238112 FAM222BQ8WU58 562 aa15.37■□□□□ 0.05
CPSF3-201ENST00000238112 PLEKHA3Q9HB20 300 aa15.37■□□□□ 0.05
CPSF3-201ENST00000238112 IGLV3-9A0A075B6K5 115 aa15.36■□□□□ 0.05
CPSF3-201ENST00000238112 A8MXE2 369 aa15.36■□□□□ 0.05
CPSF3-201ENST00000238112 MYOD1P15172 320 aa15.36■□□□□ 0.05
CPSF3-201ENST00000238112 GATA4P43694 442 aa15.36■□□□□ 0.05
CPSF3-201ENST00000238112 SELENOVP59797 346 aa15.36■□□□□ 0.05
CPSF3-201ENST00000238112 PIP4P1Q86T03 277 aa15.36■□□□□ 0.05
CPSF3-201ENST00000238112 ZADH2Q8N4Q0 377 aa15.36■□□□□ 0.05
CPSF3-201ENST00000238112 DEFB108BQ8NET1 73 aa15.36■□□□□ 0.05
CPSF3-201ENST00000238112 NEUROG1Q92886 237 aa15.36■□□□□ 0.05
CPSF3-201ENST00000238112 SFXN3Q9BWM7 321 aa15.36■□□□□ 0.05
CPSF3-201ENST00000238112 DSPP15924 2871 aaKnown RBP15.36■□□□□ 0.05
CPSF3-201ENST00000238112 FNDC10F2Z333 226 aa15.35■□□□□ 0.05
CPSF3-201ENST00000238112 J3QR06 171 aa15.35■□□□□ 0.05
CPSF3-201ENST00000238112 ACTL6BO94805 426 aa15.35■□□□□ 0.05
CPSF3-201ENST00000238112 ADMP35318 185 aa15.35■□□□□ 0.05
CPSF3-201ENST00000238112 YPEL3P61236 119 aaPredicted RBP15.35■□□□□ 0.05
CPSF3-201ENST00000238112 PRR20EP86478 221 aa15.35■□□□□ 0.05
CPSF3-201ENST00000238112 PRR20CP86479 221 aa15.35■□□□□ 0.05
Retrieved 100 of 20,778 RNA–protein pairs in 34.7 ms