RNA–Protein interactions for RNA: ENST00000639002.1

CD44-239, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 1 (best) BASIC

Gene CD44, Length 528 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-239ENST00000639002 PIRO00625 290 aa1.31□□□□□ -2.2
CD44-239ENST00000639002 MRASO14807 208 aa1.31□□□□□ -2.2
CD44-239ENST00000639002 HMGB3O15347 200 aaKnown RBP1.31□□□□□ -2.2
CD44-239ENST00000639002 GSTZ1O43708 216 aaPredicted RBP1.31□□□□□ -2.2
CD44-239ENST00000639002 NRASP01111 189 aa1.31□□□□□ -2.2
CD44-239ENST00000639002 HRASP01112 189 aa1.31□□□□□ -2.2
CD44-239ENST00000639002 KRASP01116 189 aa1.31□□□□□ -2.2
CD44-239ENST00000639002 LHBP01229 141 aa1.31□□□□□ -2.2
CD44-239ENST00000639002 APOA2P02652 100 aa1.31□□□□□ -2.2
CD44-239ENST00000639002 SERPINE1P05121 402 aa1.31□□□□□ -2.2
CD44-239ENST00000639002 HLA-DQB2P05538 268 aa1.31□□□□□ -2.2
CD44-239ENST00000639002 CRYGDP07320 174 aa1.31□□□□□ -2.2
CD44-239ENST00000639002 GUSBP08236 651 aa1.31□□□□□ -2.2
CD44-239ENST00000639002 SEC11BP0C7V7 166 aa1.31□□□□□ -2.2
CD44-239ENST00000639002 CDK2P24941 298 aa1.31□□□□□ -2.2
CD44-239ENST00000639002 ATP6V0CP27449 155 aa1.31□□□□□ -2.2
CD44-239ENST00000639002 ERP29P30040 261 aaKnown RBP1.31□□□□□ -2.2
CD44-239ENST00000639002 PHBP35232 272 aa1.31□□□□□ -2.2
CD44-239ENST00000639002 CA7P43166 264 aa1.31□□□□□ -2.2
CD44-239ENST00000639002 AKR1C2P52895 323 aa1.31□□□□□ -2.2
CD44-239ENST00000639002 CMC4P56277 68 aaPredicted RBP1.31□□□□□ -2.2
CD44-239ENST00000639002 SNRPD2P62316 118 aaKnown RBP1.31□□□□□ -2.2
CD44-239ENST00000639002 HERVK_113P63121 156 aa1.31□□□□□ -2.2
CD44-239ENST00000639002 HOXC5Q00444 222 aa1.31□□□□□ -2.2
CD44-239ENST00000639002 GRK1Q15835 563 aa1.31□□□□□ -2.2
CD44-239ENST00000639002 PLPPR5Q32ZL2 321 aa1.31□□□□□ -2.2
CD44-239ENST00000639002 CCDC58Q4VC31 144 aa1.31□□□□□ -2.2
CD44-239ENST00000639002 MESTQ5EB52 335 aa1.31□□□□□ -2.2
CD44-239ENST00000639002 HES3Q5TGS1 186 aa1.31□□□□□ -2.2
CD44-239ENST00000639002 GLT8D1Q68CQ7 371 aa1.31□□□□□ -2.2
CD44-239ENST00000639002 SBSNQ6UWP8 590 aa1.31□□□□□ -2.2
CD44-239ENST00000639002 Q6ZRU5 148 aa1.31□□□□□ -2.2
CD44-239ENST00000639002 GOLT1AQ6ZVE7 132 aa1.31□□□□□ -2.2
CD44-239ENST00000639002 FAM19A3Q7Z5A8 133 aa1.31□□□□□ -2.2
CD44-239ENST00000639002 DPPA2Q7Z7J5 298 aa1.31□□□□□ -2.2
CD44-239ENST00000639002 BAP18Q8IXM2 172 aa1.31□□□□□ -2.2
CD44-239ENST00000639002 ZNF567Q8N184 647 aa1.31□□□□□ -2.2
CD44-239ENST00000639002 SMIM20Q8N5G0 67 aa1.31□□□□□ -2.2
CD44-239ENST00000639002 FAM24BQ8N5W8 94 aa1.31□□□□□ -2.2
CD44-239ENST00000639002 GDPD1Q8N9F7 314 aa1.31□□□□□ -2.2
CD44-239ENST00000639002 FER1L6-AS1Q8NA97 138 aa1.31□□□□□ -2.2
CD44-239ENST00000639002 LY6G5BQ8NDX9 201 aa1.31□□□□□ -2.2
CD44-239ENST00000639002 ZNF555Q8NEP9 628 aa1.31□□□□□ -2.2
CD44-239ENST00000639002 OR2M3Q8NG83 312 aa1.31□□□□□ -2.2
CD44-239ENST00000639002 OR11H6Q8NGC7 330 aa1.31□□□□□ -2.2
CD44-239ENST00000639002 ZNRF2Q8NHG8 242 aa1.31□□□□□ -2.2
CD44-239ENST00000639002 GRPEL2Q8TAA5 225 aa1.31□□□□□ -2.2
CD44-239ENST00000639002 LHFPL5Q8TAF8 219 aa1.31□□□□□ -2.2
CD44-239ENST00000639002 ROPN1LQ96C74 230 aa1.31□□□□□ -2.2
CD44-239ENST00000639002 TCEAL4Q96EI5 215 aa1.31□□□□□ -2.2
CD44-239ENST00000639002 PPP1R2P1Q96PQ5 205 aa1.31□□□□□ -2.2
CD44-239ENST00000639002 DERL3Q96Q80 235 aa1.31□□□□□ -2.2
CD44-239ENST00000639002 OR52B2Q96RD2 323 aa1.31□□□□□ -2.2
CD44-239ENST00000639002 NMNAT3Q96T66 252 aa1.31□□□□□ -2.2
CD44-239ENST00000639002 TSC22D3Q99576 134 aa1.31□□□□□ -2.2
CD44-239ENST00000639002 GINS3Q9BRX5 216 aa1.31□□□□□ -2.2
CD44-239ENST00000639002 MED28Q9H204 178 aa1.31□□□□□ -2.2
CD44-239ENST00000639002 ABCG5Q9H222 651 aa1.31□□□□□ -2.2
CD44-239ENST00000639002 MIXL1Q9H2W2 232 aa1.31□□□□□ -2.2
CD44-239ENST00000639002 LYRM2Q9NU23 88 aaPredicted RBP1.31□□□□□ -2.2
CD44-239ENST00000639002 C14orf105Q9NVL8 296 aa1.31□□□□□ -2.2
CD44-239ENST00000639002 CMTM6Q9NX76 183 aa1.31□□□□□ -2.2
CD44-239ENST00000639002 SSR3Q9UNL2 185 aa1.31□□□□□ -2.2
CD44-239ENST00000639002 GINS2Q9Y248 185 aa1.31□□□□□ -2.2
CD44-239ENST00000639002 PKIGQ9Y2B9 76 aa1.31□□□□□ -2.2
CD44-239ENST00000639002 TIMM22Q9Y584 194 aa1.31□□□□□ -2.2
CD44-239ENST00000639002 NUP155O75694 1391 aa1.31□□□□□ -2.2
CD44-239ENST00000639002 ZFHX2Q9C0A1 2572 aaPredicted RBP1.31□□□□□ -2.2
CD44-239ENST00000639002 KIF1BO60333 1816 aa1.31□□□□□ -2.2
CD44-239ENST00000639002 ATRNO75882 1429 aa1.31□□□□□ -2.2
CD44-239ENST00000639002 DCCP43146 1447 aa1.31□□□□□ -2.2
CD44-239ENST00000639002 DOCK5Q9H7D0 1870 aa1.31□□□□□ -2.2
CD44-239ENST00000639002 CEP164Q9UPV0 1460 aa1.31□□□□□ -2.2
CD44-239ENST00000639002 BAZ2AQ9UIF9 1905 aaKnown RBP1.3□□□□□ -2.2
CD44-239ENST00000639002 ZNF292O60281 2723 aa1.3□□□□□ -2.2
CD44-239ENST00000639002 hCG_1818297A0A087WSY0 165 aa1.3□□□□□ -2.2
CD44-239ENST00000639002 EXOC1LA0A1B0GW35 172 aa1.3□□□□□ -2.2
CD44-239ENST00000639002 MAP1LC3B2A6NCE7 125 aa1.3□□□□□ -2.2
CD44-239ENST00000639002 LINC00862A6NCI5 91 aa1.3□□□□□ -2.2
CD44-239ENST00000639002 EFCAB10A6NFE3 127 aa1.3□□□□□ -2.2
CD44-239ENST00000639002 ZNF729A6NN14 1252 aaPredicted RBP1.3□□□□□ -2.2
CD44-239ENST00000639002 A8MT66 165 aa1.3□□□□□ -2.2
CD44-239ENST00000639002 LEUTXA8MZ59 168 aa1.3□□□□□ -2.2
CD44-239ENST00000639002 H7C1C5 153 aa1.3□□□□□ -2.2
CD44-239ENST00000639002 J3QRE1 110 aa1.3□□□□□ -2.2
CD44-239ENST00000639002 M0QZK8 103 aa1.3□□□□□ -2.2
CD44-239ENST00000639002 ISLRO14498 428 aa1.3□□□□□ -2.2
CD44-239ENST00000639002 ORC5O43913 435 aa1.3□□□□□ -2.2
CD44-239ENST00000639002 APOMO95445 188 aa1.3□□□□□ -2.2
CD44-239ENST00000639002 GPR75O95800 540 aa1.3□□□□□ -2.2
CD44-239ENST00000639002 IGLV2-8P01709 118 aa1.3□□□□□ -2.2
CD44-239ENST00000639002 IGLV6-57P01721 117 aa1.3□□□□□ -2.2
CD44-239ENST00000639002 HLA-DRB1P01911 266 aa1.3□□□□□ -2.2
CD44-239ENST00000639002 GYPCP04921 128 aa1.3□□□□□ -2.2
CD44-239ENST00000639002 C8GP07360 202 aa1.3□□□□□ -2.2
CD44-239ENST00000639002 RBP1P09455 135 aa1.3□□□□□ -2.2
CD44-239ENST00000639002 OR10J4P0C629 311 aa1.3□□□□□ -2.2
CD44-239ENST00000639002 NBEAP1P0C6P0 100 aa1.3□□□□□ -2.2
CD44-239ENST00000639002 FGF6P10767 208 aa1.3□□□□□ -2.2
CD44-239ENST00000639002 PPIBP23284 216 aaKnown RBP1.3□□□□□ -2.2
Retrieved 100 of 20,778 RNA–protein pairs in 72.3 ms